Wall clock time and date at job start Tue Mar 31 2020 12:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 N 1.46500 * 109.46932 * 120.00183 * 2 1 3 5 5 C 1.35209 * 126.00055 * 274.99732 * 4 2 1 6 6 C 1.34566 * 107.61455 * 180.02562 * 5 4 2 7 7 C 1.40486 * 108.04258 * 359.90367 * 6 5 4 8 8 N 1.30128 * 108.22840 * 0.12728 * 7 6 5 9 9 C 1.50951 * 123.48964 * 180.34622 * 7 6 5 10 10 C 1.53368 * 108.20200 * 16.60493 * 9 7 6 11 11 H 1.08996 * 109.38197 * 69.40829 * 10 9 7 12 12 N 1.46506 * 109.42619 * 189.26742 * 10 9 7 13 13 C 1.34771 * 119.99515 * 275.28545 * 12 10 9 14 14 O 1.21583 * 120.00543 * 0.26795 * 13 12 10 15 15 N 1.34784 * 119.99547 * 179.97438 * 13 12 10 16 16 C 1.46499 * 119.99971 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47267 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47257 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99988 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00042 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00041 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46717 * 59.99948 * 22 20 18 24 24 H 1.48497 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46828 * 299.99949 * 22 20 18 26 26 C 1.53028 * 109.74888 * 309.35066 * 10 9 7 27 27 C 1.50881 * 128.32431 * 179.90431 * 6 5 4 28 28 H 1.08999 * 109.46691 * 59.99890 * 1 2 3 29 29 H 1.08992 * 109.47114 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47161 * 300.00610 * 1 2 3 31 31 H 1.09001 * 109.46951 * 239.99890 * 2 1 3 32 32 H 1.09007 * 109.46776 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47080 * 299.98992 * 3 2 1 34 34 H 1.08991 * 109.47402 * 60.00052 * 3 2 1 35 35 H 1.07997 * 126.18855 * 359.97438 * 5 4 2 36 36 H 1.08994 * 109.71910 * 256.92819 * 9 7 6 37 37 H 1.08999 * 109.71344 * 136.28238 * 9 7 6 38 38 H 0.96999 * 120.00076 * 95.28204 * 12 10 9 39 39 H 0.96999 * 120.00044 * 359.97438 * 15 13 12 40 40 H 1.09004 * 109.47024 * 300.00310 * 16 15 13 41 41 H 1.09005 * 109.47136 * 59.99926 * 16 15 13 42 42 H 1.09004 * 109.47330 * 300.00096 * 17 16 15 43 43 H 1.09005 * 109.47124 * 59.99892 * 17 16 15 44 44 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.42953 * 191.80535 * 26 10 9 46 46 H 1.08998 * 109.42809 * 311.70370 * 26 10 9 47 47 H 1.09007 * 109.72148 * 76.85088 * 27 6 5 48 48 H 1.08997 * 109.75673 * 316.22031 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1934 -0.1375 2.4174 6 6 2.6544 -1.0994 3.2378 7 6 2.7652 -2.2875 2.4963 8 7 2.3863 -2.0424 1.2758 9 6 3.2450 -3.5933 3.0822 10 6 3.1670 -3.4901 4.6104 11 1 2.1218 -3.4694 4.9187 12 7 3.8293 -4.6505 5.2115 13 6 3.1502 -5.8026 5.3778 14 8 1.9895 -5.8807 5.0245 15 7 3.7597 -6.8703 5.9304 16 6 3.0214 -8.1226 6.1117 17 6 3.9370 -9.1658 6.7552 18 6 3.1777 -10.4542 6.9411 19 1 2.1455 -10.5223 6.6309 20 6 3.8012 -11.5464 7.5062 21 7 5.0583 -11.4637 7.8835 22 14 2.8598 -13.1433 7.7374 23 1 2.3945 -13.6391 6.4171 24 1 3.7486 -14.1559 8.3618 25 1 1.6878 -12.9041 8.6174 26 6 3.8611 -2.2091 5.0782 27 6 3.0088 -0.9910 4.7004 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.9992 0.8904 2.6857 36 1 4.2756 -3.7762 2.7781 37 1 2.6087 -4.4076 2.7356 38 1 4.7565 -4.5894 5.4898 39 1 4.6871 -6.8095 6.2080 40 1 2.1611 -7.9469 6.7576 41 1 2.6799 -8.4866 5.1426 42 1 4.7976 -9.3416 6.1097 43 1 4.2781 -8.8016 7.7243 44 1 5.4968 -12.2320 8.2814 45 1 3.9892 -2.2405 6.1602 46 1 4.8373 -2.1301 4.5997 47 1 2.0983 -0.9792 5.2997 48 1 3.5760 -0.0768 4.8753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343959708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:47 Heat of formation + Delta-G solvation = 22.683442 kcal Electronic energy + Delta-G solvation = -26175.641779 eV Core-core repulsion = 22459.261048 eV Total energy + Delta-G solvation = -3716.380731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70552 -39.65486 -37.44768 -35.69892 -34.64641 -33.26957 -32.71992 -31.75671 -29.73508 -28.94508 -28.39228 -27.75808 -25.06347 -24.22544 -22.07753 -21.84056 -20.93379 -20.49383 -20.16478 -19.23721 -17.84135 -16.94040 -16.42238 -16.07869 -15.59770 -15.34321 -14.91085 -14.66477 -14.49362 -14.28817 -13.92631 -13.85543 -13.58140 -13.39289 -13.38741 -13.04698 -12.99539 -12.71826 -12.48602 -12.23294 -12.16056 -11.75354 -11.66600 -11.66029 -11.25301 -11.14832 -11.00312 -10.93928 -10.61189 -10.42575 -10.25623 -9.86178 -9.50141 -9.35885 -9.22772 -8.96985 -8.44986 -8.43131 -8.19088 -6.05202 -4.07591 1.74234 2.20926 2.62931 3.08717 3.34590 3.38033 3.42074 3.65765 4.01190 4.35933 4.39810 4.44392 4.53814 4.55294 4.69517 4.73016 4.88905 4.93584 4.96179 5.08343 5.14536 5.16924 5.31176 5.31813 5.33713 5.42556 5.45685 5.57002 5.61768 5.65284 5.76137 5.92590 5.96474 6.08130 6.13602 6.37651 6.45992 6.54880 6.71669 6.83934 6.88494 7.07377 7.32228 7.62089 7.62718 7.68544 7.94241 8.30979 8.51498 8.97389 9.08044 9.56864 11.06391 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.030116 B = 0.001899 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.525049 B =14743.149296 C =15305.023647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.157 3.843 3 C -0.163 4.163 4 N -0.376 5.376 5 C 0.058 3.942 6 C -0.240 4.240 7 C 0.089 3.911 8 N -0.288 5.288 9 C -0.051 4.051 10 C 0.173 3.827 11 H 0.091 0.909 12 N -0.749 5.749 13 C 0.698 3.302 14 O -0.596 6.596 15 N -0.739 5.739 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.124 4.124 27 C -0.033 4.033 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.169 0.831 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.395 0.605 39 H 0.393 0.607 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 30.303 -12.105 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.221 4.221 4 N -0.159 5.159 5 C -0.086 4.086 6 C -0.251 4.251 7 C -0.079 4.079 8 N -0.108 5.108 9 C -0.091 4.091 10 C 0.066 3.934 11 H 0.109 0.891 12 N -0.405 5.405 13 C 0.398 3.602 14 O -0.475 6.475 15 N -0.392 5.392 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.162 4.162 27 C -0.072 4.072 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.186 0.814 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.228 0.772 39 H 0.226 0.774 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.120 29.679 -13.645 32.815 hybrid contribution 0.535 -0.456 1.072 1.281 sum -2.585 29.224 -12.574 31.919 Atomic orbital electron populations 1.22248 0.93724 1.03463 1.02915 1.21204 0.94741 0.92570 0.85982 1.22187 1.02291 0.94106 1.03560 1.48829 1.51774 1.07052 1.08240 1.21848 1.01646 0.99409 0.85688 1.20066 1.13934 0.93188 0.97938 1.22226 0.98491 0.96285 0.90944 1.77080 1.20786 0.93066 1.19910 1.20552 1.01853 0.91826 0.94883 1.20631 0.98402 0.83667 0.90699 0.89080 1.45186 1.15517 1.11661 1.68101 1.16090 0.84974 0.80264 0.78856 1.90893 1.15968 1.83541 1.57076 1.45538 1.15801 1.12377 1.65534 1.21576 0.95405 0.81098 1.00185 1.19323 0.94872 0.92335 0.95945 1.21025 0.98189 0.95973 1.40742 0.92280 1.24992 0.94940 0.99014 0.95349 1.69947 1.10796 1.30912 1.41711 0.86573 0.79670 0.82777 0.78515 1.20124 1.21286 1.20130 1.21834 0.99374 0.93422 1.01619 1.19896 0.99413 0.97635 0.90272 0.90577 0.91506 0.91928 0.88132 0.91510 0.90038 0.91555 0.81409 0.89821 0.89275 0.77192 0.77414 0.92835 0.92809 0.95971 0.95972 0.92853 0.90575 0.91183 0.91010 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.52 37.16 0.35 -0.63 16 2 C 0.16 1.07 3.93 -67.93 -0.27 0.80 16 3 C -0.16 -0.66 8.83 37.16 0.33 -0.33 16 4 N -0.38 -3.83 3.54 -54.99 -0.19 -4.03 16 5 C 0.06 0.52 10.55 -17.36 -0.18 0.34 16 6 C -0.24 -2.49 5.89 -104.99 -0.62 -3.11 16 7 C 0.09 1.14 7.10 -82.34 -0.58 0.56 16 8 N -0.29 -3.93 12.56 33.75 0.42 -3.51 16 9 C -0.05 -0.64 5.88 -27.57 -0.16 -0.81 16 10 C 0.17 2.04 2.39 -67.72 -0.16 1.88 16 11 H 0.09 1.30 7.54 -51.93 -0.39 0.91 16 12 N -0.75 -9.49 5.08 -58.47 -0.30 -9.79 16 13 C 0.70 12.34 8.53 -86.92 -0.74 11.60 16 14 O -0.60 -13.04 16.01 5.29 0.08 -12.95 16 15 N -0.74 -13.24 5.56 -65.23 -0.36 -13.60 16 16 C 0.14 3.07 5.61 -4.05 -0.02 3.05 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 22 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.12 -1.05 5.33 -26.52 -0.14 -1.19 16 27 C -0.03 -0.27 6.28 -27.59 -0.17 -0.44 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.22 7.16 -51.93 -0.37 -0.15 16 35 H 0.17 0.92 7.27 -52.49 -0.38 0.54 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.39 3.80 8.61 -40.82 -0.35 3.45 16 39 H 0.39 6.00 8.49 -40.82 -0.35 5.65 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -35.06 391.73 -9.80 -44.86 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.15 Total: 3.56 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.93 Total: -1.47 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.31 Total: -56.50 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.06 -9.80 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343959708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.540 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds