Wall clock time and date at job start Tue Mar 31 2020 12:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46863 * 2 1 4 4 N 1.46501 * 109.46983 * 180.02562 * 3 2 1 5 5 N 1.28449 * 125.18667 * 264.57710 * 4 3 2 6 6 C 1.30863 * 110.92490 * 179.81609 * 5 4 3 7 7 C 1.39678 * 107.86213 * 0.44005 * 6 5 4 8 8 C 1.36594 * 125.19400 * 84.87775 * 4 3 2 9 9 C 1.47168 * 126.88355 * 359.97438 * 8 4 3 10 10 O 1.21631 * 119.99619 * 5.13181 * 9 8 4 11 11 N 1.34774 * 120.00090 * 185.13281 * 9 8 4 12 12 C 1.46498 * 119.99955 * 185.07056 * 11 9 8 13 13 C 1.52996 * 109.47209 * 275.00326 * 12 11 9 14 14 C 1.52999 * 109.47366 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47209 * 59.99790 * 14 13 12 16 16 N 1.46498 * 109.47270 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00234 * 274.99949 * 16 15 14 18 18 H 1.07999 * 119.99620 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00021 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00505 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99822 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47253 * 89.99720 * 21 19 17 23 23 H 1.48497 * 109.47083 * 209.99732 * 21 19 17 24 24 H 1.48495 * 109.46956 * 329.99797 * 21 19 17 25 25 C 1.52999 * 109.46972 * 300.00020 * 15 14 13 26 26 C 1.52997 * 109.47457 * 154.99849 * 12 11 9 27 27 H 1.08999 * 109.47261 * 59.99711 * 1 2 3 28 28 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47509 * 300.00140 * 1 2 3 30 30 H 1.08998 * 109.47005 * 119.99553 * 2 1 3 31 31 H 1.08999 * 109.47183 * 240.00232 * 2 1 3 32 32 H 1.08992 * 109.47331 * 299.99806 * 3 2 1 33 33 H 1.08999 * 109.47031 * 60.00139 * 3 2 1 34 34 H 1.07995 * 126.07097 * 180.18029 * 6 5 4 35 35 H 1.08002 * 127.32081 * 179.72349 * 7 6 5 36 36 H 0.97004 * 119.99948 * 5.06826 * 11 9 8 37 37 H 1.09004 * 109.47151 * 34.99793 * 12 11 9 38 38 H 1.09004 * 109.46629 * 299.99787 * 13 12 11 39 39 H 1.09001 * 109.47412 * 59.99390 * 13 12 11 40 40 H 1.09004 * 109.47055 * 299.99504 * 14 13 12 41 41 H 1.09001 * 109.47295 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47346 * 59.99892 * 15 14 13 43 43 H 0.97003 * 120.00222 * 95.00114 * 16 15 14 44 44 H 0.97002 * 120.00671 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.47723 * 300.00072 * 25 15 14 46 46 H 1.09002 * 109.47446 * 179.97438 * 25 15 14 47 47 H 1.09001 * 109.47274 * 300.00318 * 26 12 11 48 48 H 1.09004 * 109.46986 * 59.99843 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.2455 1.5417 1.0442 6 6 5.5137 1.5074 0.7231 7 6 5.6009 1.3832 -0.6655 8 6 4.2917 1.3431 -1.1128 9 6 3.8383 1.2178 -2.5072 10 8 2.6527 1.2883 -2.7698 11 7 4.7366 1.0248 -3.4932 12 6 4.2983 1.0111 -4.8910 13 6 3.8119 -0.3919 -5.2593 14 6 3.3548 -0.4065 -6.7193 15 6 4.5260 -0.0188 -7.6243 16 7 4.0881 -0.0322 -9.0222 17 6 4.0983 -1.2033 -9.7318 18 1 4.4296 -2.1170 -9.2610 19 6 3.6840 -1.2157 -11.0565 20 7 3.2817 -0.1019 -11.6309 21 14 3.6986 -2.8133 -12.0247 22 1 2.3906 -3.4989 -11.8684 23 1 3.9349 -2.5195 -13.4610 24 1 4.7818 -3.6915 -11.5143 25 6 5.0123 1.3843 -7.2561 26 6 5.4690 1.3991 -5.7965 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 6.3453 1.5688 1.4093 35 1 6.4989 1.3301 -1.2630 36 1 5.6733 0.8951 -3.2773 37 1 3.4846 1.7242 -5.0237 38 1 4.6257 -1.1050 -5.1266 39 1 2.9779 -0.6684 -4.6142 40 1 2.5412 0.3066 -6.8524 41 1 3.0087 -1.4062 -6.9818 42 1 5.3396 -0.7319 -7.4912 43 1 3.7910 0.7886 -9.4453 44 1 2.9918 -0.1107 -12.5565 45 1 4.1988 2.0975 -7.3891 46 1 5.8470 1.6603 -7.9005 47 1 5.8155 2.3987 -5.5341 48 1 6.2827 0.6860 -5.6638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026501721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:52 Heat of formation + Delta-G solvation = 29.910536 kcal Electronic energy + Delta-G solvation = -27028.990724 eV Core-core repulsion = 23312.923384 eV Total energy + Delta-G solvation = -3716.067340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.80054 -39.87902 -37.93908 -35.81091 -34.86744 -33.19492 -31.82762 -31.39630 -30.45170 -30.29187 -27.41988 -26.78068 -24.10935 -23.15424 -22.37309 -22.32336 -21.80933 -20.77157 -20.21345 -19.46053 -18.21036 -17.02087 -16.43379 -16.17924 -16.01441 -15.53554 -15.17580 -14.76519 -14.66257 -14.22760 -14.02787 -13.78665 -13.59033 -13.45525 -13.44618 -13.03201 -12.61700 -12.46008 -12.34156 -12.06814 -11.83958 -11.71327 -11.47811 -11.16526 -11.10670 -11.03938 -10.83230 -10.79013 -10.69400 -10.22181 -10.15821 -10.09118 -9.79135 -9.60290 -9.49004 -9.31572 -9.03429 -8.85545 -6.94309 -5.75625 -3.04138 1.02338 2.10105 2.35066 3.01518 3.02979 3.43777 3.48960 3.50469 4.21912 4.34937 4.49103 4.59519 4.66108 4.79658 4.84898 4.92220 5.00547 5.07705 5.19286 5.23902 5.32213 5.37725 5.42435 5.50745 5.57166 5.64391 5.66954 5.70207 5.76569 5.81064 5.85164 5.89594 5.99930 6.17594 6.21102 6.22235 6.27426 6.45030 6.46249 6.53903 6.61160 6.70724 6.97620 7.13964 7.27856 7.70974 7.78587 7.97394 8.43267 9.54233 10.12793 10.47150 11.47144 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002441 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.952386 B =11469.605251 C =12257.804830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.116 3.884 4 N -0.254 5.254 5 N -0.280 5.280 6 C -0.005 4.005 7 C -0.192 4.192 8 C -0.035 4.035 9 C 0.588 3.412 10 O -0.535 6.535 11 N -0.708 5.708 12 C 0.148 3.852 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.177 3.823 16 N -0.725 5.725 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.120 4.120 26 C -0.119 4.119 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.186 0.814 35 H 0.160 0.840 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 4.425 25.769 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.004 4.004 4 N -0.041 5.041 5 N -0.112 5.112 6 C -0.181 4.181 7 C -0.221 4.221 8 C -0.164 4.164 9 C 0.373 3.627 10 O -0.412 6.412 11 N -0.359 5.359 12 C 0.045 3.955 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.159 4.159 26 C -0.158 4.158 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.203 0.797 35 H 0.178 0.822 36 H 0.235 0.765 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.529 4.419 26.376 26.787 hybrid contribution 0.931 -0.778 -1.207 1.711 sum 2.460 3.642 25.169 25.549 Atomic orbital electron populations 1.21657 0.93818 1.02637 1.02370 1.21814 0.97286 0.94929 1.03165 1.22312 0.72351 0.99920 1.05790 1.45846 1.07714 1.48564 1.02011 1.73216 1.04351 1.19722 1.13946 1.23565 0.93494 1.05963 0.95064 1.22263 0.95571 1.08532 0.95740 1.21519 0.91491 1.13253 0.90091 1.16924 0.85911 0.76904 0.82974 1.90809 1.15938 1.50779 1.83700 1.45865 1.10953 1.72533 1.06500 1.21185 0.97835 0.98784 0.77680 1.21903 1.00755 0.95397 0.98260 1.22228 1.00493 1.02327 0.92242 1.20242 0.93874 0.93594 0.85583 1.42429 1.78241 1.09246 1.06657 1.19236 1.36364 0.88038 0.93155 0.91238 1.24735 1.02219 0.96951 0.97141 1.69656 1.50394 1.25339 1.12818 0.86218 0.77649 0.83012 0.79491 1.21770 1.21812 1.20799 1.21745 1.01336 0.99238 0.93596 1.21755 0.97016 1.01341 0.95677 0.91759 0.91849 0.92442 0.91458 0.90828 0.86662 0.88373 0.79731 0.82213 0.76460 0.89294 0.92236 0.92231 0.92476 0.91772 0.93577 0.78305 0.93545 0.91939 0.91257 0.91734 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.21 6.26 -26.73 -0.17 -1.37 16 3 C 0.12 1.11 5.70 -4.04 -0.02 1.08 16 4 N -0.25 -2.83 3.35 -57.14 -0.19 -3.02 16 5 N -0.28 -3.10 11.90 30.59 0.36 -2.74 16 6 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 7 C -0.19 -1.66 10.50 -38.98 -0.41 -2.07 16 8 C -0.03 -0.38 6.96 -82.06 -0.57 -0.95 16 9 C 0.59 7.17 7.75 -12.64 -0.10 7.07 16 10 O -0.54 -7.98 14.42 5.25 0.08 -7.90 16 11 N -0.71 -7.34 5.06 -54.97 -0.28 -7.62 16 12 C 0.15 1.84 2.42 -67.94 -0.16 1.68 16 13 C -0.12 -1.76 5.49 -26.73 -0.15 -1.91 16 14 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 15 C 0.18 3.36 2.77 -67.93 -0.19 3.17 16 16 N -0.73 -17.85 5.12 -53.43 -0.27 -18.13 16 17 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 21 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.12 -1.84 5.39 -26.76 -0.14 -1.99 16 26 C -0.12 -1.38 5.39 -26.76 -0.14 -1.52 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.12 1.20 6.51 -51.93 -0.34 0.86 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 0.88 7.62 -52.49 -0.40 0.48 16 36 H 0.40 3.04 7.68 -40.82 -0.31 2.73 16 37 H 0.09 1.27 7.65 -51.93 -0.40 0.87 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 43 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -32.64 388.72 -9.10 -41.74 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.07 Total: 9.33 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.29 Total: -7.43 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.35 Total: -58.92 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.90 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.64 -9.10 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026501721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.655 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds