Wall clock time and date at job start Tue Mar 31 2020 12:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47138 * 2 1 4 4 N 1.46504 * 109.47419 * 184.95981 * 3 2 1 5 5 N 1.28438 * 125.18975 * 264.83441 * 4 3 2 6 6 C 1.30865 * 110.92645 * 179.97438 * 5 4 3 7 7 C 1.39674 * 107.86097 * 359.77498 * 6 5 4 8 8 C 1.36604 * 125.18879 * 84.80302 * 4 3 2 9 9 C 1.47160 * 126.88102 * 359.97438 * 8 4 3 10 10 O 1.21625 * 120.00498 * 26.07198 * 9 8 4 11 11 N 1.34783 * 119.99496 * 206.06358 * 9 8 4 12 12 C 1.46920 * 120.63173 * 7.19293 * 11 9 8 13 13 C 1.53197 * 108.77413 * 233.62781 * 12 11 9 14 14 C 1.53045 * 109.31164 * 305.36364 * 13 12 11 15 15 H 1.08997 * 109.45979 * 181.37293 * 14 13 12 16 16 N 1.46495 * 109.45955 * 301.34630 * 14 13 12 17 17 C 1.36938 * 119.99836 * 274.99969 * 16 14 13 18 18 H 1.07998 * 120.00003 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00080 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00132 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99958 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46877 * 90.00035 * 21 19 17 23 23 H 1.48503 * 109.46950 * 210.00369 * 21 19 17 24 24 H 1.48506 * 109.46931 * 330.00255 * 21 19 17 25 25 C 1.53044 * 109.53799 * 61.36154 * 14 13 12 26 26 C 1.46926 * 120.62880 * 187.20541 * 11 9 8 27 27 H 1.08996 * 109.59237 * 246.16267 * 26 11 9 28 28 C 1.53002 * 109.58476 * 6.58898 * 26 11 9 29 29 H 1.08999 * 109.47102 * 304.98006 * 1 2 3 30 30 H 1.08998 * 109.46952 * 64.97918 * 1 2 3 31 31 H 1.09002 * 109.47231 * 184.97536 * 1 2 3 32 32 H 1.09001 * 109.47251 * 239.99396 * 2 1 3 33 33 H 1.09003 * 109.46915 * 119.99868 * 2 1 3 34 34 H 1.09001 * 109.47593 * 64.95878 * 3 2 1 35 35 H 1.09002 * 109.47259 * 304.95712 * 3 2 1 36 36 H 1.08005 * 126.06929 * 179.97438 * 6 5 4 37 37 H 1.08000 * 127.31914 * 180.23544 * 7 6 5 38 38 H 1.08999 * 109.59012 * 353.40924 * 12 11 9 39 39 H 1.08995 * 109.59283 * 113.84001 * 12 11 9 40 40 H 1.08995 * 109.49817 * 65.30909 * 13 12 11 41 41 H 1.08994 * 109.50190 * 185.38098 * 13 12 11 42 42 H 0.97001 * 120.00280 * 95.00007 * 16 14 13 43 43 H 0.96998 * 120.00018 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.49538 * 178.68062 * 25 14 13 45 45 H 1.09008 * 109.49552 * 58.58860 * 25 14 13 46 46 H 1.09004 * 109.47517 * 52.25167 * 28 26 11 47 47 H 1.09007 * 109.47321 * 172.25073 * 28 26 11 48 48 H 1.08997 * 109.47141 * 292.24411 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5001 1.4442 -0.1194 5 7 4.3232 1.5095 0.8645 6 6 5.5610 1.4907 0.4404 7 6 5.5351 1.3998 -0.9532 8 6 4.1940 1.3762 -1.2942 9 6 3.6287 1.2885 -2.6500 10 8 2.5185 1.7309 -2.8758 11 7 4.3413 0.7180 -3.6416 12 6 5.6130 0.0403 -3.3552 13 6 6.7001 0.6289 -4.2601 14 6 6.2509 0.5317 -5.7199 15 1 7.0330 0.9276 -6.3676 16 7 5.9984 -0.8705 -6.0605 17 6 7.0318 -1.6743 -6.4620 18 1 8.0329 -1.2744 -6.5279 19 6 6.7926 -3.0030 -6.7853 20 7 7.7858 -3.7754 -7.1716 21 14 5.0610 -3.6946 -6.6720 22 1 4.3690 -3.5119 -7.9731 23 1 5.1264 -5.1416 -6.3448 24 1 4.3112 -2.9799 -5.6079 25 6 4.9679 1.3428 -5.9157 26 6 3.8613 0.7623 -5.0295 27 1 3.6165 -0.2458 -5.3640 28 6 2.6179 1.6499 -5.1141 29 1 -0.3633 0.5891 0.8420 30 1 -0.3633 0.4346 -0.9312 31 1 -0.3634 -1.0238 0.0891 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7510 1.9301 0.9310 35 1 1.6060 1.9813 -0.8423 36 1 6.4457 1.5343 1.0584 37 1 6.3817 1.3587 -1.6225 38 1 5.8832 0.1962 -2.3108 39 1 5.5112 -1.0267 -3.5531 40 1 6.8642 1.6743 -3.9989 41 1 7.6266 0.0707 -4.1262 42 1 5.0993 -1.2297 -6.0017 43 1 7.6187 -4.7039 -7.3972 44 1 4.6615 1.2923 -6.9604 45 1 5.1484 2.3816 -5.6388 46 1 2.8301 2.6170 -4.6581 47 1 2.3443 1.7934 -6.1595 48 1 1.7935 1.1718 -4.5852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044619607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:41 Heat of formation + Delta-G solvation = 81.648510 kcal Electronic energy + Delta-G solvation = -28813.007669 eV Core-core repulsion = 25099.183856 eV Total energy + Delta-G solvation = -3713.823813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.69099 -40.23816 -37.64410 -35.68512 -34.41147 -33.26226 -32.00520 -31.67621 -30.39467 -29.69895 -27.38889 -26.65244 -24.63135 -23.37592 -22.96713 -22.34504 -22.20857 -20.98577 -19.76813 -18.61087 -17.78959 -17.17066 -16.54923 -16.03074 -15.66773 -15.51342 -15.05791 -14.69006 -14.52393 -14.35560 -14.04673 -13.61123 -13.53748 -13.43290 -13.15919 -12.97803 -12.54926 -12.41620 -12.35067 -12.27753 -12.15432 -11.73194 -11.66564 -11.34166 -11.11023 -11.07728 -10.97039 -10.88129 -10.73466 -10.40326 -10.30289 -10.08611 -9.62801 -9.25340 -9.23691 -9.07201 -8.87513 -8.37090 -7.33461 -5.82563 -3.18317 1.25275 2.22992 2.53620 3.09279 3.13993 3.31066 3.34273 3.40863 4.32487 4.39788 4.53089 4.53713 4.76354 4.87982 5.02770 5.07130 5.07695 5.14563 5.20687 5.28286 5.28434 5.39120 5.45851 5.51399 5.54176 5.56828 5.64430 5.67860 5.70203 5.77866 5.83501 5.91343 5.97769 6.01225 6.09309 6.26726 6.34386 6.37251 6.42005 6.57946 6.58677 6.64493 6.65986 6.88212 7.47489 7.93602 7.95908 8.15161 8.36505 9.14460 9.87152 10.06510 11.35768 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.004114 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.043278 B = 6804.531908 C = 7067.248325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.114 3.886 4 N -0.258 5.258 5 N -0.284 5.284 6 C -0.004 4.004 7 C -0.199 4.199 8 C -0.029 4.029 9 C 0.588 3.412 10 O -0.542 6.542 11 N -0.581 5.581 12 C 0.079 3.921 13 C -0.150 4.150 14 C 0.179 3.821 15 H 0.062 0.938 16 N -0.746 5.746 17 C -0.243 4.243 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.879 3.121 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.279 1.279 25 C -0.137 4.137 26 C 0.146 3.854 27 H 0.074 0.926 28 C -0.137 4.137 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.360 0.640 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.103 12.105 13.628 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.045 5.045 5 N -0.116 5.116 6 C -0.180 4.180 7 C -0.227 4.227 8 C -0.158 4.158 9 C 0.375 3.625 10 O -0.421 6.421 11 N -0.313 5.313 12 C -0.042 4.042 13 C -0.190 4.190 14 C 0.069 3.931 15 H 0.079 0.921 16 N -0.390 5.390 17 C -0.373 4.373 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.709 3.291 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.176 4.176 26 C 0.044 3.956 27 H 0.092 0.908 28 C -0.194 4.194 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.203 0.797 37 H 0.191 0.809 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.263 12.282 14.385 22.014 hybrid contribution -0.416 -0.867 -0.655 1.164 sum -11.679 11.415 13.730 21.335 Atomic orbital electron populations 1.21659 0.93881 1.02490 1.02417 1.21851 0.97213 0.95171 1.03241 1.22281 0.72966 0.99583 1.05709 1.45772 1.07411 1.49447 1.01882 1.73173 1.01390 1.20151 1.16857 1.23603 0.94476 1.05840 0.94063 1.22569 0.95246 1.08544 0.96352 1.21574 0.92431 1.12613 0.89177 1.16964 0.84550 0.78423 0.82608 1.90797 1.19225 1.49685 1.82425 1.47909 1.23043 1.53533 1.06796 1.22563 0.82284 0.97829 1.01569 1.22493 0.98619 0.99568 0.98360 1.20164 0.94507 0.85353 0.93033 0.92051 1.42870 1.07640 1.06812 1.81677 1.19069 0.89916 0.91377 1.36942 0.89074 1.24641 0.96486 0.96343 1.01359 1.69688 1.29881 1.06735 1.51688 0.86658 0.85968 0.78607 0.77854 1.21018 1.21717 1.20551 1.22308 0.96053 0.99526 0.99715 1.21306 0.94590 1.00202 0.79548 0.90801 1.22200 0.96931 1.00307 0.99965 0.92323 0.91910 0.91901 0.91236 0.91179 0.88327 0.86605 0.79710 0.80915 0.87805 0.90238 0.92761 0.90067 0.80661 0.93034 0.90388 0.91443 0.91743 0.93588 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.14 -1.37 6.26 -26.73 -0.17 -1.54 16 3 C 0.11 1.23 5.95 -4.04 -0.02 1.20 16 4 N -0.26 -3.37 3.35 -57.14 -0.19 -3.56 16 5 N -0.28 -3.72 11.90 30.59 0.36 -3.35 16 6 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 7 C -0.20 -2.41 8.75 -38.99 -0.34 -2.75 16 8 C -0.03 -0.40 6.55 -82.06 -0.54 -0.94 16 9 C 0.59 8.78 7.33 -12.64 -0.09 8.68 16 10 O -0.54 -8.54 10.71 5.26 0.06 -8.48 16 11 N -0.58 -8.70 2.97 -166.58 -0.50 -9.19 16 12 C 0.08 1.18 5.59 -3.71 -0.02 1.16 16 13 C -0.15 -2.26 5.62 -26.61 -0.15 -2.41 16 14 C 0.18 3.10 3.10 -67.89 -0.21 2.89 16 15 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.75 -16.16 4.11 -53.38 -0.22 -16.38 16 17 C -0.24 -6.42 10.41 -15.06 -0.16 -6.57 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 21 Si 0.88 21.49 27.74 -169.99 -4.71 16.78 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 25 C -0.14 -2.03 5.07 -26.61 -0.13 -2.16 16 26 C 0.15 2.22 3.20 -67.60 -0.22 2.01 16 27 H 0.07 1.25 6.64 -51.93 -0.34 0.91 16 28 C -0.14 -1.92 7.61 37.16 0.28 -1.64 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.12 1.31 6.42 -51.93 -0.33 0.98 16 36 H 0.19 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.17 1.84 5.97 -52.49 -0.31 1.53 16 38 H 0.10 1.35 3.14 -51.93 -0.16 1.19 16 39 H 0.08 1.40 7.74 -51.93 -0.40 1.00 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.36 7.84 3.92 -40.82 -0.16 7.68 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 46 H 0.06 0.94 6.85 -51.93 -0.36 0.58 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.11 6.64 -51.93 -0.35 0.77 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -31.06 367.74 -8.09 -39.15 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.50 Total: 10.10 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.71 Total: -3.00 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.23 Total: -60.08 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.06 Total: -8.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.06 -8.09 -39.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044619607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.795 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds