Wall clock time and date at job start Tue Mar 31 2020 12:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47138 * 2 1 4 4 N 1.46504 * 109.47419 * 184.95981 * 3 2 1 5 5 N 1.28438 * 125.18975 * 264.83441 * 4 3 2 6 6 C 1.30865 * 110.92645 * 179.97438 * 5 4 3 7 7 C 1.39674 * 107.86097 * 359.77498 * 6 5 4 8 8 C 1.36604 * 125.18879 * 84.80302 * 4 3 2 9 9 C 1.47160 * 126.88102 * 359.97438 * 8 4 3 10 10 O 1.21625 * 120.00498 * 26.07198 * 9 8 4 11 11 N 1.34783 * 119.99496 * 206.06358 * 9 8 4 12 12 C 1.46920 * 120.63173 * 7.19293 * 11 9 8 13 13 C 1.53197 * 108.77413 * 233.62781 * 12 11 9 14 14 C 1.53045 * 109.31164 * 305.36364 * 13 12 11 15 15 H 1.08997 * 109.45979 * 181.37293 * 14 13 12 16 16 N 1.46495 * 109.45955 * 301.34630 * 14 13 12 17 17 C 1.36938 * 119.99836 * 274.99969 * 16 14 13 18 18 H 1.07998 * 120.00003 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00080 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00132 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99958 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46877 * 90.00035 * 21 19 17 23 23 H 1.48503 * 109.46950 * 210.00369 * 21 19 17 24 24 H 1.48506 * 109.46931 * 330.00255 * 21 19 17 25 25 C 1.53044 * 109.53799 * 61.36154 * 14 13 12 26 26 C 1.46926 * 120.62880 * 187.20541 * 11 9 8 27 27 H 1.08996 * 109.59237 * 246.16267 * 26 11 9 28 28 C 1.53002 * 109.58476 * 6.58898 * 26 11 9 29 29 H 1.08999 * 109.47102 * 304.98006 * 1 2 3 30 30 H 1.08998 * 109.46952 * 64.97918 * 1 2 3 31 31 H 1.09002 * 109.47231 * 184.97536 * 1 2 3 32 32 H 1.09001 * 109.47251 * 239.99396 * 2 1 3 33 33 H 1.09003 * 109.46915 * 119.99868 * 2 1 3 34 34 H 1.09001 * 109.47593 * 64.95878 * 3 2 1 35 35 H 1.09002 * 109.47259 * 304.95712 * 3 2 1 36 36 H 1.08005 * 126.06929 * 179.97438 * 6 5 4 37 37 H 1.08000 * 127.31914 * 180.23544 * 7 6 5 38 38 H 1.08999 * 109.59012 * 353.40924 * 12 11 9 39 39 H 1.08995 * 109.59283 * 113.84001 * 12 11 9 40 40 H 1.08995 * 109.49817 * 65.30909 * 13 12 11 41 41 H 1.08994 * 109.50190 * 185.38098 * 13 12 11 42 42 H 0.97001 * 120.00280 * 95.00007 * 16 14 13 43 43 H 0.96998 * 120.00018 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.49538 * 178.68062 * 25 14 13 45 45 H 1.09008 * 109.49552 * 58.58860 * 25 14 13 46 46 H 1.09004 * 109.47517 * 52.25167 * 28 26 11 47 47 H 1.09007 * 109.47321 * 172.25073 * 28 26 11 48 48 H 1.08997 * 109.47141 * 292.24411 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5001 1.4442 -0.1194 5 7 4.3232 1.5095 0.8645 6 6 5.5610 1.4907 0.4404 7 6 5.5351 1.3998 -0.9532 8 6 4.1940 1.3762 -1.2942 9 6 3.6287 1.2885 -2.6500 10 8 2.5185 1.7309 -2.8758 11 7 4.3413 0.7180 -3.6416 12 6 5.6130 0.0403 -3.3552 13 6 6.7001 0.6289 -4.2601 14 6 6.2509 0.5317 -5.7199 15 1 7.0330 0.9276 -6.3676 16 7 5.9984 -0.8705 -6.0605 17 6 7.0318 -1.6743 -6.4620 18 1 8.0329 -1.2744 -6.5279 19 6 6.7926 -3.0030 -6.7853 20 7 7.7858 -3.7754 -7.1716 21 14 5.0610 -3.6946 -6.6720 22 1 4.3690 -3.5119 -7.9731 23 1 5.1264 -5.1416 -6.3448 24 1 4.3112 -2.9799 -5.6079 25 6 4.9679 1.3428 -5.9157 26 6 3.8613 0.7623 -5.0295 27 1 3.6165 -0.2458 -5.3640 28 6 2.6179 1.6499 -5.1141 29 1 -0.3633 0.5891 0.8420 30 1 -0.3633 0.4346 -0.9312 31 1 -0.3634 -1.0238 0.0891 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7510 1.9301 0.9310 35 1 1.6060 1.9813 -0.8423 36 1 6.4457 1.5343 1.0584 37 1 6.3817 1.3587 -1.6225 38 1 5.8832 0.1962 -2.3108 39 1 5.5112 -1.0267 -3.5531 40 1 6.8642 1.6743 -3.9989 41 1 7.6266 0.0707 -4.1262 42 1 5.0993 -1.2297 -6.0017 43 1 7.6187 -4.7039 -7.3972 44 1 4.6615 1.2923 -6.9604 45 1 5.1484 2.3816 -5.6388 46 1 2.8301 2.6170 -4.6581 47 1 2.3443 1.7934 -6.1595 48 1 1.7935 1.1718 -4.5852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044619607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:40 Heat of formation + Delta-G solvation = 63.160691 kcal Electronic energy + Delta-G solvation = -28813.809361 eV Core-core repulsion = 25099.183856 eV Total energy + Delta-G solvation = -3714.625505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.64506 -41.42847 -38.94705 -36.58690 -35.91354 -34.47592 -33.78412 -32.52488 -31.60948 -31.24215 -28.61469 -27.47898 -25.89775 -25.14740 -24.19897 -23.37501 -23.03365 -22.11335 -20.88576 -19.89190 -19.75189 -18.27147 -17.63181 -17.13207 -16.74225 -16.62431 -16.34336 -16.16029 -15.69612 -15.46442 -15.40711 -15.01257 -14.78844 -14.46413 -14.40908 -14.17900 -14.04251 -13.69116 -13.37078 -13.15287 -13.07444 -13.03562 -12.94940 -12.64033 -12.54204 -12.39900 -12.15086 -12.01175 -11.98460 -11.88016 -11.73212 -11.55993 -11.45305 -10.94875 -10.36742 -10.21713 -9.93563 -9.61243 -9.25318 -7.99247 -5.30380 0.22518 1.27348 1.35382 1.36995 1.43723 1.62327 2.01167 2.05340 2.48114 3.28017 3.33390 3.51435 3.61186 3.75452 3.83958 3.92714 3.95230 4.01765 4.11425 4.19961 4.25296 4.30980 4.37368 4.43610 4.45395 4.56418 4.62100 4.69714 4.76362 4.79325 4.85137 4.90185 4.97976 5.03379 5.03942 5.10923 5.20949 5.23131 5.23695 5.29834 5.39552 5.51944 5.66406 5.74386 5.84073 6.24886 6.30651 6.94132 7.08139 7.11764 7.88838 8.06100 9.22567 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.004114 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.043278 B = 6804.531908 C = 7067.248325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.112 3.888 4 N -0.263 5.263 5 N -0.298 5.298 6 C -0.001 4.001 7 C -0.196 4.196 8 C -0.052 4.052 9 C 0.588 3.412 10 O -0.553 6.553 11 N -0.583 5.583 12 C 0.086 3.914 13 C -0.140 4.140 14 C 0.169 3.831 15 H 0.055 0.945 16 N -0.747 5.747 17 C -0.215 4.215 18 H 0.065 0.935 19 C -0.059 4.059 20 N -0.983 5.983 21 Si 0.940 3.060 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.260 1.260 25 C -0.126 4.126 26 C 0.144 3.856 27 H 0.055 0.945 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.218 0.782 37 H 0.188 0.812 38 H 0.126 0.874 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.361 0.639 43 H 0.255 0.745 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 13.874 15.161 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.008 4.008 4 N -0.051 5.051 5 N -0.130 5.130 6 C -0.177 4.177 7 C -0.225 4.225 8 C -0.181 4.181 9 C 0.376 3.624 10 O -0.433 6.433 11 N -0.315 5.315 12 C -0.035 4.035 13 C -0.181 4.181 14 C 0.061 3.939 15 H 0.073 0.927 16 N -0.391 5.391 17 C -0.347 4.347 18 H 0.083 0.917 19 C -0.250 4.250 20 N -0.635 5.635 21 Si 0.769 3.231 22 H -0.207 1.207 23 H -0.227 1.227 24 H -0.185 1.185 25 C -0.164 4.164 26 C 0.041 3.959 27 H 0.073 0.927 28 C -0.181 4.181 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.235 0.765 37 H 0.205 0.795 38 H 0.143 0.857 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.195 0.805 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.472 14.115 15.945 24.678 hybrid contribution 0.004 -1.301 -1.080 1.691 sum -12.467 12.814 14.865 23.251 Atomic orbital electron populations 1.21641 0.92241 1.03157 1.02942 1.21783 0.98569 0.94542 1.01868 1.22407 0.72159 0.99903 1.06290 1.45981 1.08067 1.49401 1.01623 1.73178 1.02139 1.20607 1.17111 1.24183 0.94941 1.04392 0.94167 1.22798 0.94911 1.07711 0.97035 1.21585 0.93355 1.14221 0.88936 1.17106 0.84316 0.77986 0.82999 1.90792 1.19663 1.50084 1.82739 1.47885 1.23035 1.53719 1.06814 1.22486 0.82275 0.96040 1.02748 1.22354 0.97883 1.01302 0.96538 1.20437 0.95954 0.83195 0.94264 0.92722 1.42882 1.06487 1.08221 1.81538 1.19049 0.89939 0.91525 1.34137 0.91739 1.25302 1.00014 0.97039 1.02665 1.69851 1.32172 1.06909 1.54526 0.85647 0.81825 0.77311 0.78341 1.20696 1.22733 1.18532 1.22208 0.94249 1.00012 0.99972 1.21298 0.95289 0.99473 0.79830 0.92702 1.22052 0.95792 0.99477 1.00796 0.90492 0.92427 0.91416 0.93820 0.91189 0.86437 0.87436 0.76549 0.79487 0.85716 0.93208 0.89661 0.91409 0.80520 0.93594 0.90014 0.89206 0.92092 0.91970 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.13 -2.48 6.26 30.59 0.19 -2.29 16 3 C 0.11 2.25 5.95 86.38 0.51 2.76 16 4 N -0.26 -6.45 3.35 -334.69 -1.12 -7.57 16 5 N -0.30 -7.16 11.90 -57.13 -0.68 -7.84 16 6 C 0.00 -0.03 12.03 85.18 1.02 1.00 16 7 C -0.20 -4.24 8.75 22.66 0.20 -4.05 16 8 C -0.05 -1.35 6.55 40.78 0.27 -1.09 16 9 C 0.59 16.71 7.33 86.59 0.63 17.35 16 10 O -0.55 -16.80 10.71 -4.11 -0.04 -16.84 16 11 N -0.58 -16.50 2.97 -799.18 -2.38 -18.88 16 12 C 0.09 2.43 5.59 86.37 0.48 2.91 16 13 C -0.14 -3.97 5.62 30.68 0.17 -3.80 16 14 C 0.17 5.62 3.10 45.02 0.14 5.76 16 15 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 16 N -0.75 -31.90 4.11 -322.81 -1.33 -33.22 16 17 C -0.22 -11.48 10.41 84.03 0.87 -10.61 16 18 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 19 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 20 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 21 Si 0.94 44.90 27.74 68.60 1.90 46.80 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.26 -11.42 6.52 99.48 0.65 -10.77 16 25 C -0.13 -3.42 5.07 30.67 0.16 -3.27 16 26 C 0.14 4.13 3.20 44.97 0.14 4.27 16 27 H 0.06 1.79 6.64 -2.39 -0.02 1.78 16 28 C -0.12 -3.24 7.61 71.98 0.55 -2.69 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.11 2.35 6.42 -2.39 -0.02 2.33 16 36 H 0.22 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.19 3.38 5.97 -2.91 -0.02 3.36 16 38 H 0.13 2.99 3.14 -2.39 -0.01 2.98 16 39 H 0.05 1.72 7.74 -2.39 -0.02 1.70 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.36 15.36 3.92 -92.71 -0.36 15.00 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.06 1.64 6.85 -2.39 -0.02 1.63 16 47 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.06 1.79 6.64 -2.39 -0.02 1.77 16 Total: -1.00 -67.86 367.74 3.73 -64.13 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.54 Total: 32.60 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.53 Total: 2.04 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -5.20 Total: -128.74 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.04 Total: -16.84 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -67.86 3.73 -64.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044619607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.295 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds