Wall clock time and date at job start Tue Mar 31 2020 12:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47290 * 2 1 4 4 N 1.46502 * 109.47176 * 119.99541 * 2 1 3 5 5 C 1.35840 * 126.14015 * 300.02700 * 4 2 1 6 6 N 1.30167 * 109.00613 * 179.73597 * 5 4 2 7 7 C 1.35752 * 108.86748 * 0.02562 * 6 5 4 8 8 C 1.47328 * 126.23732 * 179.97438 * 7 6 5 9 9 O 1.21624 * 119.99908 * 179.97438 * 8 7 6 10 10 N 1.34772 * 119.99920 * 359.97363 * 8 7 6 11 11 C 1.46502 * 120.00143 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.45802 * 60.02865 * 11 10 8 13 13 C 1.53041 * 109.46127 * 300.06867 * 11 10 8 14 14 C 1.53188 * 109.31615 * 301.34552 * 13 11 10 15 15 N 1.46931 * 108.77337 * 305.36680 * 14 13 11 16 16 C 1.36940 * 120.62597 * 233.63381 * 15 14 13 17 17 H 1.07997 * 119.99725 * 152.60891 * 16 15 14 18 18 C 1.38816 * 120.00052 * 332.59917 * 16 15 14 19 19 N 1.31612 * 119.99854 * 159.37226 * 18 16 15 20 20 Si 1.86804 * 119.99794 * 339.37735 * 18 16 15 21 21 H 1.48495 * 109.47007 * 92.92994 * 20 18 16 22 22 H 1.48498 * 109.46799 * 212.92358 * 20 18 16 23 23 H 1.48493 * 109.47260 * 332.92829 * 20 18 16 24 24 C 1.46926 * 118.74022 * 53.60408 * 15 14 13 25 25 C 1.53042 * 109.45943 * 180.02562 * 11 10 8 26 26 C 1.35381 * 126.12892 * 119.71612 * 4 2 1 27 27 H 1.09001 * 109.46418 * 300.00169 * 1 2 3 28 28 H 1.08993 * 109.47025 * 59.99817 * 1 2 3 29 29 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47143 * 239.99848 * 2 1 3 31 31 H 1.08997 * 109.47353 * 59.99605 * 3 2 1 32 32 H 1.08994 * 109.47182 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46718 * 300.00332 * 3 2 1 34 34 H 1.08007 * 125.49751 * 359.71142 * 5 4 2 35 35 H 0.97010 * 120.00111 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47198 * 59.99935 * 12 11 10 37 37 H 1.09003 * 109.47302 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47394 * 300.00106 * 12 11 10 39 39 H 1.09004 * 109.49450 * 61.29819 * 13 11 10 40 40 H 1.09001 * 109.49771 * 181.39055 * 13 11 10 41 41 H 1.08990 * 109.58949 * 185.57533 * 14 13 11 42 42 H 1.09001 * 109.58524 * 65.14699 * 14 13 11 43 43 H 0.97000 * 119.99797 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.58210 * 186.60489 * 24 15 14 45 45 H 1.08995 * 109.70179 * 66.25274 * 24 15 14 46 46 H 1.09003 * 109.49730 * 178.60909 * 25 11 10 47 47 H 1.08994 * 109.50154 * 298.67543 * 25 11 10 48 48 H 1.07996 * 126.56672 * 0.24298 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7679 -0.3370 2.4837 6 7 2.3588 -1.1822 3.2780 7 6 3.0100 -2.1077 2.5282 8 6 3.8035 -3.2396 3.0377 9 8 4.3413 -4.0043 2.2598 10 7 3.9334 -3.4277 4.3659 11 6 4.7220 -4.5535 4.8727 12 6 6.1634 -4.4315 4.3743 13 6 4.1181 -5.8666 4.3693 14 6 2.6643 -5.9695 4.8411 15 7 2.6286 -5.8095 6.3012 16 6 2.0176 -6.7467 7.0910 17 1 2.3441 -6.8894 8.1105 18 6 0.9785 -7.5130 6.5811 19 7 0.6615 -8.6554 7.1527 20 14 0.0303 -6.9229 5.0837 21 1 0.6399 -7.4929 3.8555 22 1 -1.3831 -7.3666 5.1865 23 1 0.0803 -5.4402 5.0189 24 6 3.2615 -4.6254 6.8979 25 6 4.7081 -4.5379 6.4030 26 6 2.7955 -1.7989 1.2167 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.1745 0.5090 2.7976 35 1 3.5042 -2.8179 4.9865 36 1 6.5936 -3.4962 4.7321 37 1 6.7504 -5.2689 4.7516 38 1 6.1731 -4.4424 3.2844 39 1 4.1494 -5.8873 3.2799 40 1 4.6897 -6.7056 4.7661 41 1 2.2605 -6.9449 4.5704 42 1 2.0717 -5.1835 4.3729 43 1 -0.0648 -9.1907 6.7966 44 1 3.2516 -4.7142 7.9842 45 1 2.7183 -3.7288 6.5996 46 1 5.2741 -5.3895 6.7807 47 1 5.1598 -3.6131 6.7615 48 1 3.1733 -2.3357 0.3592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045515621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:13 Heat of formation + Delta-G solvation = 47.810717 kcal Electronic energy + Delta-G solvation = -28309.093474 eV Core-core repulsion = 24593.802344 eV Total energy + Delta-G solvation = -3715.291130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35952 -39.88901 -37.39623 -36.31014 -34.44024 -32.07550 -31.39049 -30.87625 -30.31282 -29.38720 -27.90893 -27.59400 -24.05514 -23.54472 -23.30212 -22.68373 -21.06309 -20.68670 -19.84566 -18.61916 -17.76994 -16.84579 -16.41363 -15.77026 -15.25373 -15.14213 -14.87064 -14.52887 -14.25231 -14.05015 -13.93639 -13.67016 -13.56424 -13.53412 -13.19484 -13.03509 -12.84463 -12.74014 -12.25415 -11.99713 -11.95378 -11.82599 -11.79637 -11.60319 -11.25553 -11.12892 -10.70148 -10.44056 -10.30455 -10.13599 -9.93066 -9.89245 -9.63075 -9.39217 -9.19240 -8.76959 -8.60037 -8.39187 -6.84858 -5.86370 -3.20511 1.60110 2.36233 2.42161 3.42861 3.55812 3.59730 3.62588 3.79814 3.98928 4.29942 4.36302 4.41673 4.53658 4.63167 4.91064 5.00750 5.07093 5.10354 5.12144 5.17889 5.26391 5.35681 5.40560 5.45338 5.50825 5.54754 5.57779 5.91752 5.93768 6.01524 6.12918 6.18223 6.25738 6.29872 6.38761 6.44286 6.64137 6.66982 6.71583 6.79524 6.84887 6.88292 7.00189 7.14795 7.67584 8.05200 8.07818 8.41589 8.64375 9.04643 9.82501 10.21869 11.29822 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.004027 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.649204 B = 6951.244078 C = 8090.817852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 C -0.163 4.163 4 N -0.454 5.454 5 C 0.184 3.816 6 N -0.460 5.460 7 C -0.057 4.057 8 C 0.603 3.397 9 O -0.547 6.547 10 N -0.698 5.698 11 C 0.183 3.817 12 C -0.159 4.159 13 C -0.143 4.143 14 C 0.133 3.867 15 N -0.605 5.605 16 C -0.256 4.256 17 H 0.085 0.915 18 C 0.023 3.977 19 N -0.911 5.911 20 Si 0.882 3.118 21 H -0.290 1.290 22 H -0.305 1.305 23 H -0.271 1.271 24 C 0.148 3.852 25 C -0.137 4.137 26 C 0.029 3.971 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.206 0.794 35 H 0.406 0.594 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 21.835 -15.024 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.137 5.137 5 C -0.099 4.099 6 N -0.179 5.179 7 C -0.187 4.187 8 C 0.389 3.611 9 O -0.425 6.425 10 N -0.348 5.348 11 C 0.098 3.902 12 C -0.217 4.217 13 C -0.183 4.183 14 C 0.007 3.993 15 N -0.329 5.329 16 C -0.384 4.384 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.554 5.554 20 Si 0.712 3.288 21 H -0.218 1.218 22 H -0.234 1.234 23 H -0.196 1.196 24 C 0.022 3.978 25 C -0.177 4.177 26 C -0.110 4.110 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.222 0.778 35 H 0.242 0.758 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.097 0.903 47 H 0.079 0.921 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.463 21.209 -14.747 26.215 hybrid contribution -0.988 0.571 -1.447 1.842 sum 3.474 21.779 -16.194 27.361 Atomic orbital electron populations 1.22199 0.92845 1.03659 1.03580 1.21557 0.95779 0.94139 0.86255 1.22182 1.02310 0.94007 1.03584 1.45629 1.37971 1.21915 1.08173 1.24981 1.04156 1.02075 0.78718 1.70639 1.10750 1.03861 1.32624 1.20738 1.07247 1.00196 0.90471 1.16843 0.79169 0.82452 0.82608 1.90708 1.48956 1.45966 1.56915 1.45939 1.52323 1.30185 1.06390 1.20282 0.90101 0.86067 0.93795 1.22209 0.95221 1.01072 1.03231 1.22407 0.98779 0.95713 1.01426 1.21228 0.93870 0.99464 0.84691 1.44360 1.65028 1.22226 1.01294 1.18928 1.11131 1.10992 0.97340 0.89710 1.25245 0.97719 0.96749 0.97798 1.69837 1.31349 1.11492 1.42729 0.86961 0.78949 0.79655 0.83191 1.21750 1.23376 1.19629 1.20880 0.90178 0.89404 0.97354 1.22306 1.00396 1.01805 0.93166 1.22571 0.98036 0.90610 0.99741 0.91383 0.90246 0.91432 0.87912 0.91411 0.91566 0.90272 0.77754 0.75815 0.93289 0.92063 0.90710 0.90599 0.91189 0.91370 0.95957 0.92902 0.91723 0.96093 0.90269 0.92149 0.79759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 9.24 37.16 0.34 -0.43 16 2 C 0.13 0.67 3.57 -67.93 -0.24 0.43 16 3 C -0.16 -0.63 9.24 37.16 0.34 -0.29 16 4 N -0.45 -4.22 2.59 -111.24 -0.29 -4.51 16 5 C 0.18 1.94 11.52 -89.92 -1.04 0.91 16 6 N -0.46 -6.69 11.01 -11.03 -0.12 -6.82 16 7 C -0.06 -0.89 6.98 -83.09 -0.58 -1.47 16 8 C 0.60 10.68 7.23 -12.57 -0.09 10.59 16 9 O -0.55 -10.57 13.09 5.26 0.07 -10.50 16 10 N -0.70 -12.05 4.10 -48.66 -0.20 -12.25 16 11 C 0.18 3.19 0.66 -131.78 -0.09 3.10 16 12 C -0.16 -2.46 8.40 37.16 0.31 -2.14 16 13 C -0.14 -2.94 4.67 -26.61 -0.12 -3.06 16 14 C 0.13 3.20 3.94 -3.71 -0.01 3.18 16 15 N -0.61 -15.03 2.77 -172.35 -0.48 -15.51 16 16 C -0.26 -7.39 10.04 -15.06 -0.15 -7.54 16 17 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 18 C 0.02 0.71 5.23 -17.43 -0.09 0.61 16 19 N -0.91 -28.84 13.97 55.49 0.78 -28.06 16 20 Si 0.88 23.93 24.35 -169.99 -4.14 19.79 16 21 H -0.29 -7.75 6.62 56.52 0.37 -7.37 16 22 H -0.31 -8.32 7.11 56.52 0.40 -7.92 16 23 H -0.27 -7.37 6.63 56.52 0.37 -7.00 16 24 C 0.15 2.99 6.24 -3.74 -0.02 2.97 16 25 C -0.14 -2.31 4.95 -26.64 -0.13 -2.45 16 26 C 0.03 0.35 11.22 -16.64 -0.19 0.17 16 27 H 0.07 0.31 7.94 -51.93 -0.41 -0.10 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.07 0.25 7.94 -51.93 -0.41 -0.16 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.21 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.41 6.81 6.98 -40.82 -0.28 6.52 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.26 6.16 -51.93 -0.32 0.94 16 39 H 0.08 1.59 6.20 -51.93 -0.32 1.27 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.07 1.81 4.49 -51.93 -0.23 1.57 16 42 H 0.02 0.56 6.67 -51.93 -0.35 0.21 16 43 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 44 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 45 H 0.02 0.42 6.94 -51.93 -0.36 0.06 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -35.70 370.45 -8.34 -44.04 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.79 Total: 3.65 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.76 Total: 4.58 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.31 Total: -67.14 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.14 Total: 19.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.70 -8.34 -44.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045515621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.850 kcal (2) G-P(sol) polarization free energy of solvation -35.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds