Wall clock time and date at job start Tue Mar 31 2020 12:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.89422 * 2 1 4 4 C 1.55130 * 110.93762 * 124.07582 * 2 1 3 5 5 N 1.47426 * 104.72388 * 155.28686 * 4 2 1 6 6 C 1.34780 * 125.65000 * 155.81623 * 5 4 2 7 7 O 1.21607 * 119.99542 * 359.71525 * 6 5 4 8 8 C 1.47422 * 119.99814 * 179.71611 * 6 5 4 9 9 C 1.41291 * 126.41928 * 0.02732 * 8 6 5 10 10 N 1.30446 * 108.02252 * 179.97438 * 9 8 6 11 11 N 1.39935 * 108.90003 * 359.74001 * 10 9 8 12 12 C 1.46501 * 125.75595 * 180.29867 * 11 10 9 13 13 C 1.52995 * 109.47016 * 255.15397 * 12 11 10 14 14 C 1.53001 * 109.47080 * 15.15365 * 12 11 10 15 15 C 1.52997 * 109.47093 * 135.15355 * 12 11 10 16 16 C 1.34258 * 108.49136 * 0.43452 * 11 10 9 17 17 C 1.47016 * 108.70222 * 335.55313 * 5 4 2 18 18 C 1.54327 * 107.27126 * 1.28415 * 17 5 4 19 19 H 1.09004 * 110.71614 * 140.73711 * 18 17 5 20 20 N 1.46497 * 110.72272 * 263.83191 * 18 17 5 21 21 C 1.36940 * 120.00079 * 273.54584 * 20 18 17 22 22 H 1.08003 * 119.99781 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00172 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99946 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47115 * 60.00529 * 25 23 21 27 27 H 1.48503 * 109.46823 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47080 * 300.00368 * 25 23 21 29 29 H 1.08993 * 109.47227 * 183.88532 * 1 2 3 30 30 H 1.09005 * 109.46715 * 303.88349 * 1 2 3 31 31 H 1.08999 * 109.47012 * 63.88163 * 1 2 3 32 32 H 1.09007 * 110.49821 * 36.44411 * 4 2 1 33 33 H 1.09000 * 110.34491 * 274.05201 * 4 2 1 34 34 H 1.07995 * 125.98342 * 359.93834 * 9 8 6 35 35 H 1.09005 * 109.47152 * 60.00456 * 13 12 11 36 36 H 1.09005 * 109.47000 * 180.02562 * 13 12 11 37 37 H 1.08996 * 109.47842 * 299.99787 * 13 12 11 38 38 H 1.09000 * 109.46993 * 60.00065 * 14 12 11 39 39 H 1.08996 * 109.46951 * 179.97438 * 14 12 11 40 40 H 1.08992 * 109.47139 * 300.00300 * 14 12 11 41 41 H 1.09000 * 109.47162 * 60.00018 * 15 12 11 42 42 H 1.08996 * 109.47324 * 179.97438 * 15 12 11 43 43 H 1.09000 * 109.47263 * 300.00107 * 15 12 11 44 44 H 1.08002 * 126.29527 * 179.84921 * 16 11 10 45 45 H 1.09000 * 109.88394 * 120.70587 * 17 5 4 46 46 H 1.09007 * 109.88216 * 241.87282 * 17 5 4 47 47 H 0.96999 * 120.00317 * 93.54162 * 20 18 17 48 48 H 0.96998 * 120.00448 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8118 1.2001 5 7 3.4280 -1.2423 0.7726 6 6 4.4490 -1.5604 1.5929 7 8 4.3021 -1.4988 2.7985 8 6 5.7437 -1.9831 1.0286 9 6 6.0625 -2.1014 -0.3428 10 7 7.3010 -2.4999 -0.4363 11 7 7.8281 -2.6478 0.8515 12 6 9.1922 -3.0733 1.1746 13 6 9.1715 -4.5219 1.6664 14 6 10.0678 -2.9718 -0.0760 15 6 9.7619 -2.1707 2.2707 16 6 6.8719 -2.3368 1.7412 17 6 3.4678 -1.2732 -0.6967 18 6 2.0861 -0.8076 -1.2024 19 1 2.1914 -0.1721 -2.0817 20 7 1.2272 -1.9575 -1.4962 21 6 1.2818 -2.5563 -2.7265 22 1 1.9583 -2.1810 -3.4802 23 6 0.4683 -3.6461 -3.0047 24 7 -0.3558 -4.1037 -2.0862 25 14 0.5423 -4.4624 -4.6833 26 1 1.9167 -4.9692 -4.9272 27 1 -0.4180 -5.5944 -4.7259 28 1 0.1865 -3.4724 -5.7313 29 1 -0.3633 -1.0252 0.0696 30 1 -0.3633 0.5730 0.8532 31 1 -0.3633 0.4524 -0.9227 32 1 1.4536 -1.6784 1.3987 33 1 2.1523 -0.1801 2.0858 34 1 5.3971 -1.8980 -1.1687 35 1 8.7657 -5.1651 0.8855 36 1 10.1865 -4.8384 1.9072 37 1 8.5478 -4.5944 2.5574 38 1 10.0825 -1.9397 -0.4264 39 1 11.0828 -3.2879 0.1645 40 1 9.6619 -3.6148 -0.8569 41 1 9.1381 -2.2430 3.1616 42 1 10.7766 -2.4875 2.5114 43 1 9.7766 -1.1386 1.9203 44 1 6.9689 -2.3554 2.8167 45 1 4.2426 -0.5984 -1.0609 46 1 3.6657 -2.2884 -1.0409 47 1 0.6199 -2.2947 -0.8192 48 1 -0.9245 -4.8650 -2.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054837310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:34 Heat of formation + Delta-G solvation = 60.216092 kcal Electronic energy + Delta-G solvation = -27727.829935 eV Core-core repulsion = 24013.076743 eV Total energy + Delta-G solvation = -3714.753193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47954 -39.45617 -37.43316 -36.84887 -33.88459 -32.44061 -30.84735 -30.52480 -29.96586 -27.85906 -27.79031 -27.63692 -26.15825 -23.96371 -22.97931 -22.55709 -21.02843 -19.64540 -19.19823 -19.02890 -17.51406 -16.93596 -16.00811 -15.76911 -15.48500 -14.99581 -14.72487 -14.55136 -14.28513 -14.17989 -13.80358 -13.56222 -13.20591 -12.95153 -12.81373 -12.67893 -12.56035 -12.51180 -12.44167 -12.15655 -11.96273 -11.79870 -11.56862 -11.56653 -11.48099 -11.09024 -10.90467 -10.81654 -10.69347 -10.39669 -10.26129 -9.88725 -9.64729 -9.50583 -9.49514 -8.96813 -8.63752 -8.09276 -7.03561 -5.81332 -3.11189 1.63558 2.24327 2.36565 3.42191 3.46269 3.47495 3.47851 3.77738 4.09838 4.35179 4.45732 4.55210 4.69027 4.79107 4.97002 5.04710 5.12031 5.22847 5.24412 5.28626 5.32292 5.39347 5.40912 5.42140 5.51332 5.55186 5.60597 5.66384 5.76824 5.78413 5.84521 5.91883 5.97629 6.03434 6.23080 6.29557 6.39532 6.40943 6.52536 6.56688 6.75889 6.81370 6.87606 6.97281 7.64524 7.65758 8.02122 8.36648 8.62699 9.48597 10.03786 10.38471 11.40742 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.003591 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.278762 B = 7795.875554 C = 9308.585793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.606 3.394 7 O -0.568 6.568 8 C -0.282 4.282 9 C 0.072 3.928 10 N -0.298 5.298 11 N -0.355 5.355 12 C 0.177 3.823 13 C -0.162 4.162 14 C -0.143 4.143 15 C -0.161 4.161 16 C 0.121 3.879 17 C 0.065 3.935 18 C 0.171 3.829 19 H 0.070 0.930 20 N -0.712 5.712 21 C -0.247 4.247 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.285 1.285 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.202 0.798 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.181 0.819 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.311 5.580 7.591 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.333 5.333 6 C 0.396 3.604 7 O -0.449 6.449 8 C -0.296 4.296 9 C -0.115 4.115 10 N -0.117 5.117 11 N -0.135 5.135 12 C 0.095 3.905 13 C -0.220 4.220 14 C -0.201 4.201 15 C -0.220 4.220 16 C -0.030 4.030 17 C -0.061 4.061 18 C 0.059 3.941 19 H 0.088 0.912 20 N -0.353 5.353 21 C -0.378 4.378 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.212 1.212 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.219 0.781 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.198 0.802 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.393 5.142 7.295 21.348 hybrid contribution -0.831 -0.567 -0.182 1.023 sum 18.561 4.576 7.113 20.397 Atomic orbital electron populations 1.21544 0.93440 1.02956 1.00924 1.22649 0.96887 0.98447 0.95403 0.90290 1.22281 0.82706 0.98276 0.97192 1.48125 1.11661 1.66001 1.07505 1.16868 0.81978 0.76500 0.85042 1.90716 1.83620 1.56235 1.14287 1.20209 0.96174 1.19917 0.93344 1.24932 0.93209 0.96136 0.97235 1.77167 1.11446 1.23538 0.99504 1.48821 1.10246 1.50274 1.04139 1.20808 0.77688 0.95079 0.96961 1.22289 1.03335 0.94064 1.02278 1.21908 0.98305 1.03800 0.96053 1.22274 1.02046 0.99967 0.97674 1.22735 0.87729 0.95608 0.96914 1.23547 1.01422 1.01922 0.79178 1.21237 0.88340 0.89861 0.94685 0.91180 1.42451 1.45435 1.32754 1.14658 1.19182 1.18607 1.09429 0.90564 0.91016 1.24733 0.98977 0.98856 0.97837 1.69641 1.27298 1.27496 1.33226 0.86294 0.77225 0.78922 0.83872 1.21218 1.21759 1.21203 0.91206 0.93691 0.92136 0.91259 0.91290 0.78142 0.91322 0.90271 0.91632 0.91540 0.90949 0.90758 0.91394 0.89940 0.91351 0.80196 0.92407 0.90084 0.77710 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.85 37.16 0.33 -1.73 16 2 C -0.11 -1.79 3.53 -88.35 -0.31 -2.10 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.12 2.01 6.36 -2.41 -0.02 1.99 16 5 N -0.60 -10.64 3.32 -171.64 -0.57 -11.21 16 6 C 0.61 11.17 7.85 -12.52 -0.10 11.07 16 7 O -0.57 -11.75 17.15 5.27 0.09 -11.66 16 8 C -0.28 -4.53 6.09 -105.07 -0.64 -5.17 16 9 C 0.07 1.11 10.45 -16.98 -0.18 0.93 16 10 N -0.30 -4.41 11.56 30.86 0.36 -4.05 16 11 N -0.35 -4.42 3.41 -48.11 -0.16 -4.59 16 12 C 0.18 1.55 1.23 -131.82 -0.16 1.39 16 13 C -0.16 -1.24 8.72 37.16 0.32 -0.91 16 14 C -0.14 -1.16 8.08 37.16 0.30 -0.86 16 15 C -0.16 -1.06 8.28 37.16 0.31 -0.75 16 16 C 0.12 1.64 10.39 -16.56 -0.17 1.47 16 17 C 0.07 1.11 4.72 -3.07 -0.01 1.10 16 18 C 0.17 3.11 3.37 -66.10 -0.22 2.89 16 19 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 20 N -0.71 -16.44 4.61 -51.65 -0.24 -16.68 16 21 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 22 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 25 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.29 7.99 -51.93 -0.41 0.87 16 33 H 0.07 1.12 8.03 -51.93 -0.42 0.71 16 34 H 0.20 2.94 4.47 -52.49 -0.23 2.71 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.71 8.03 -51.93 -0.42 0.30 16 41 H 0.07 0.43 7.34 -51.93 -0.38 0.05 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.18 2.03 7.53 -52.49 -0.40 1.64 16 45 H 0.06 0.84 6.83 -51.93 -0.35 0.49 16 46 H 0.08 1.55 6.90 -51.93 -0.36 1.19 16 47 H 0.39 9.66 6.10 -40.82 -0.25 9.41 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -32.18 382.65 -7.61 -39.79 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.75 Total: 9.88 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.80 Total: 2.44 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.11 Total: -62.93 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.18 -7.61 -39.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054837310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.004 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds