Wall clock time and date at job start Tue Mar 31 2020 12:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47313 * 2 1 4 4 C 1.53002 * 109.47310 * 239.99313 * 2 1 3 5 5 N 1.46500 * 109.46600 * 65.00458 * 4 2 1 6 6 C 1.36937 * 119.99928 * 179.72295 * 5 4 2 7 7 H 1.08008 * 119.99775 * 0.27252 * 6 5 4 8 8 C 1.38810 * 120.00498 * 180.27476 * 6 5 4 9 9 N 1.31618 * 119.99694 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00374 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47049 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46970 * 120.00045 * 10 8 6 13 13 H 1.48500 * 109.47673 * 240.00145 * 10 8 6 14 14 C 1.53007 * 109.46767 * 119.99906 * 2 1 3 15 15 N 1.46500 * 109.46969 * 295.00101 * 14 2 1 16 16 C 1.34780 * 120.00325 * 180.02562 * 15 14 2 17 17 O 1.21685 * 119.99576 * 354.91581 * 16 15 14 18 18 C 1.46764 * 120.00241 * 174.91056 * 16 15 14 19 19 C 1.36831 * 126.91240 * 25.81873 * 18 16 15 20 20 N 1.33450 * 107.83132 * 179.97438 * 19 18 16 21 21 C 1.30551 * 109.68942 * 359.97438 * 20 19 18 22 22 N 1.34878 * 108.98534 * 359.78357 * 21 20 19 23 23 C 1.46450 * 124.98489 * 179.52101 * 22 21 20 24 24 H 1.08999 * 109.34952 * 103.20234 * 23 22 21 25 25 C 1.52999 * 109.85089 * 223.49332 * 23 22 21 26 26 C 1.53269 * 108.88730 * 343.49928 * 23 22 21 27 27 C 1.53156 * 109.43879 * 49.99552 * 26 23 22 28 28 C 1.51115 * 127.09309 * 180.02562 * 21 20 19 29 29 H 1.08995 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46967 * 300.00479 * 1 2 3 31 31 H 1.09000 * 109.46368 * 60.00169 * 1 2 3 32 32 H 1.08995 * 109.47429 * 305.00459 * 4 2 1 33 33 H 1.09002 * 109.46877 * 185.00327 * 4 2 1 34 34 H 0.97001 * 120.00416 * 359.97438 * 5 4 2 35 35 H 0.96997 * 120.00389 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47390 * 54.99656 * 14 2 1 37 37 H 1.09003 * 109.47054 * 175.00432 * 14 2 1 38 38 H 0.97002 * 120.00254 * 359.97438 * 15 14 2 39 39 H 1.07998 * 126.08111 * 359.94304 * 19 18 16 40 40 H 1.08999 * 109.47574 * 188.35022 * 25 23 22 41 41 H 1.09006 * 109.47285 * 308.35036 * 25 23 22 42 42 H 1.09000 * 109.46988 * 68.34752 * 25 23 22 43 43 H 1.09000 * 109.47113 * 290.00374 * 26 23 22 44 44 H 1.08995 * 109.47437 * 169.99025 * 26 23 22 45 45 H 1.09004 * 109.51047 * 170.73863 * 27 26 23 46 46 H 1.08994 * 109.51330 * 50.59023 * 27 26 23 47 47 H 1.09000 * 109.70483 * 283.65600 * 28 21 20 48 48 H 1.08998 * 109.70544 * 44.27420 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6526 0.0352 -2.4423 6 6 2.0066 -0.4178 -3.6852 7 1 2.5677 -1.3351 -3.7860 8 6 1.6444 0.3020 -4.8155 9 7 0.9611 1.4202 -4.6925 10 14 2.1279 -0.3155 -6.5108 11 1 2.8866 -1.5851 -6.3773 12 1 0.9045 -0.5530 -7.3185 13 1 2.9763 0.7002 -7.1843 14 6 2.0400 -0.7213 1.2493 15 7 1.6523 0.0354 2.4424 16 6 1.9962 -0.4130 3.6661 17 8 2.5470 -1.4913 3.7862 18 6 1.7065 0.3994 4.8535 19 6 0.7172 1.3352 4.9876 20 7 0.7976 1.8412 6.2198 21 6 1.7811 1.2744 6.8647 22 7 2.3709 0.3688 6.0577 23 6 3.5197 -0.4616 6.4257 24 1 3.1786 -1.4735 6.6443 25 6 4.5254 -0.4972 5.2732 26 6 4.1855 0.1361 7.6701 27 6 3.1223 0.3980 8.7410 28 6 2.2196 1.5511 8.2841 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6055 -1.7199 -1.2950 33 1 3.1264 -0.7996 -1.2054 34 1 1.1484 0.8589 -2.3518 35 1 0.7077 1.9231 -5.4823 36 1 1.6053 -1.7197 1.2953 37 1 3.1263 -0.7995 1.2058 38 1 1.1488 0.8595 2.3518 39 1 -0.0006 1.6149 4.2307 40 1 5.3023 -1.2300 5.4914 41 1 4.0128 -0.7745 4.3521 42 1 4.9776 0.4875 5.1551 43 1 4.6740 1.0740 7.4059 44 1 4.9266 -0.5633 8.0571 45 1 3.6087 0.6663 9.6789 46 1 2.5220 -0.5002 8.8853 47 1 2.7734 2.4892 8.3215 48 1 1.3461 1.6131 8.9332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753614240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:46 Heat of formation + Delta-G solvation = 25.339673 kcal Electronic energy + Delta-G solvation = -26943.533408 eV Core-core repulsion = 23227.267861 eV Total energy + Delta-G solvation = -3716.265548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.79052 -39.63968 -37.48219 -36.89452 -34.51726 -33.96533 -32.60941 -31.02867 -30.35013 -29.48171 -27.55571 -26.42712 -25.33838 -23.35662 -23.27697 -22.38726 -22.10885 -20.53430 -19.98933 -19.28142 -18.07667 -17.02693 -16.58272 -15.98172 -15.86365 -15.74588 -15.11816 -14.92227 -14.80930 -14.56242 -14.30882 -13.98307 -13.76427 -13.61395 -13.27618 -13.10143 -12.88135 -12.63241 -12.48368 -12.18936 -12.02310 -11.96053 -11.65433 -11.63151 -11.11549 -11.07073 -10.90986 -10.76570 -10.60606 -10.55777 -10.40139 -10.04951 -9.92901 -9.91676 -9.69525 -9.10911 -8.89377 -8.63851 -6.93485 -5.78071 -3.06590 1.14098 2.14619 2.59142 3.07300 3.16174 3.42893 3.48817 3.50883 3.84953 4.03110 4.14167 4.18934 4.52216 4.58056 4.70589 4.75442 4.84496 4.94016 5.00115 5.07178 5.16813 5.18065 5.22579 5.30420 5.35043 5.40353 5.47240 5.51481 5.56633 5.65307 5.76742 5.85348 5.92547 5.97166 6.01640 6.10579 6.22974 6.29443 6.36963 6.42306 6.63745 6.74661 6.79964 6.84169 7.31813 7.69210 7.69927 7.99826 8.40981 9.52358 10.09445 10.44096 11.44938 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.030539 B = 0.002154 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.629207 B =12993.208565 C =13496.021347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.128 3.872 15 N -0.708 5.708 16 C 0.591 3.409 17 O -0.535 6.535 18 C -0.079 4.079 19 C 0.033 3.967 20 N -0.491 5.491 21 C 0.226 3.774 22 N -0.416 5.416 23 C 0.135 3.865 24 H 0.096 0.904 25 C -0.196 4.196 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.035 4.035 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.404 0.596 39 H 0.179 0.821 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -0.809 29.385 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.582 5.582 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.005 3.995 15 N -0.358 5.358 16 C 0.378 3.622 17 O -0.415 6.415 18 C -0.197 4.197 19 C -0.122 4.122 20 N -0.209 5.209 21 C -0.037 4.037 22 N -0.097 5.097 23 C 0.033 3.967 24 H 0.114 0.886 25 C -0.253 4.253 26 C -0.170 4.170 27 C -0.166 4.166 28 C -0.074 4.074 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.240 0.760 39 H 0.196 0.804 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.111 0.889 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.310 -1.218 29.656 29.993 hybrid contribution 0.298 -0.221 -1.428 1.475 sum 4.608 -1.439 28.228 28.638 Atomic orbital electron populations 1.21802 0.94511 1.02045 1.01637 1.21567 0.96871 1.00574 0.93996 0.90384 1.20568 0.96583 0.94231 0.85346 1.42344 1.66788 1.27817 1.00592 1.19276 1.28627 1.05382 0.83659 0.91104 1.24743 1.01054 0.97402 0.97890 1.69662 1.43659 1.16507 1.28408 0.86109 0.77612 0.77808 0.84618 1.20551 1.21874 1.21884 1.21503 1.00183 0.95432 0.82399 1.45787 1.56991 1.27925 1.05118 1.16741 0.78577 0.84825 0.82060 1.90702 1.42847 1.21539 1.86435 1.20600 1.02550 1.07211 0.89298 1.22702 0.98984 0.95113 0.95369 1.69925 1.18444 1.26733 1.05830 1.23457 0.93036 0.91372 0.95791 1.45356 1.24561 1.29898 1.09866 1.21656 0.84697 0.94178 0.96204 0.88632 1.22747 0.99020 1.02449 1.01044 1.22056 0.98509 1.02615 0.93862 1.21730 0.97146 0.98765 0.98952 1.20291 1.00547 0.99575 0.86997 0.92733 0.93808 0.91040 0.95940 0.96148 0.78172 0.93560 0.90879 0.91124 0.76017 0.80375 0.90665 0.87203 0.92623 0.90476 0.89061 0.89664 0.90974 0.88887 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.64 2.46 -90.61 -0.22 -1.87 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.11 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -18.07 5.33 -59.91 -0.32 -18.39 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 10 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.13 1.67 5.07 -4.04 -0.02 1.65 16 15 N -0.71 -8.17 5.27 -61.59 -0.32 -8.49 16 16 C 0.59 7.65 6.66 -12.81 -0.09 7.56 16 17 O -0.54 -8.16 13.69 5.20 0.07 -8.09 16 18 C -0.08 -0.96 6.58 -82.36 -0.54 -1.50 16 19 C 0.03 0.38 11.40 -17.36 -0.20 0.18 16 20 N -0.49 -6.09 11.19 -10.36 -0.12 -6.21 16 21 C 0.23 2.38 7.63 -155.32 -1.19 1.20 16 22 N -0.42 -4.55 3.01 -102.72 -0.31 -4.86 16 23 C 0.13 1.20 3.26 -67.82 -0.22 0.98 16 24 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 25 C -0.20 -1.91 8.99 37.16 0.33 -1.58 16 26 C -0.13 -0.75 5.26 -26.51 -0.14 -0.88 16 27 C -0.13 -0.60 5.96 -26.44 -0.16 -0.76 16 28 C -0.04 -0.23 6.33 -27.47 -0.17 -0.40 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 31 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 35 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 3.92 7.07 -40.82 -0.29 3.63 16 39 H 0.18 1.58 7.89 -52.49 -0.41 1.17 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.40 3.43 -53.27 -0.18 1.22 16 42 H 0.05 0.53 8.06 -51.93 -0.42 0.11 16 43 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 47 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -33.61 379.76 -9.91 -43.52 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.79 Total: 8.08 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.55 Total: -1.35 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.34 Total: -65.24 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.07 Total: -8.09 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.61 -9.91 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753614240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.858 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds