Wall clock time and date at job start Tue Mar 31 2020 12:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47583 * 2 1 4 4 C 1.52998 * 109.47140 * 120.00384 * 2 1 3 5 5 N 1.46501 * 109.46795 * 294.99480 * 4 2 1 6 6 C 1.36941 * 119.99652 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00137 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99821 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00055 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00063 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47336 * 89.99995 * 10 8 6 12 12 H 1.48499 * 109.47133 * 209.99950 * 10 8 6 13 13 H 1.48504 * 109.47303 * 330.00067 * 10 8 6 14 14 C 1.53004 * 109.47116 * 240.00116 * 2 1 3 15 15 N 1.46500 * 109.47130 * 65.00152 * 14 2 1 16 16 C 1.34779 * 120.00390 * 180.02562 * 15 14 2 17 17 O 1.21682 * 119.99349 * 5.00638 * 16 15 14 18 18 C 1.46763 * 120.00281 * 185.00514 * 16 15 14 19 19 C 1.36832 * 126.91081 * 337.89687 * 18 16 15 20 20 N 1.33456 * 107.83233 * 179.97438 * 19 18 16 21 21 C 1.30551 * 109.68561 * 0.02562 * 20 19 18 22 22 N 1.34874 * 108.99102 * 359.95003 * 21 20 19 23 23 C 1.46437 * 124.99534 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.58137 * 257.11810 * 23 22 21 25 25 C 1.52998 * 109.58334 * 136.84788 * 23 22 21 26 26 C 1.53263 * 108.81810 * 17.04594 * 23 22 21 27 27 C 1.53019 * 109.50200 * 309.83183 * 26 23 22 28 28 C 1.51113 * 127.09114 * 179.97438 * 21 20 19 29 29 H 1.09001 * 109.46822 * 299.99990 * 1 2 3 30 30 H 1.08998 * 109.46844 * 59.99666 * 1 2 3 31 31 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47058 * 54.99907 * 4 2 1 33 33 H 1.09003 * 109.47337 * 175.00103 * 4 2 1 34 34 H 0.96996 * 120.00534 * 0.02562 * 5 4 2 35 35 H 0.97001 * 120.00201 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47384 * 305.00066 * 14 2 1 37 37 H 1.08999 * 109.47337 * 185.00006 * 14 2 1 38 38 H 0.97008 * 119.99645 * 0.02562 * 15 14 2 39 39 H 1.07998 * 126.08229 * 0.02562 * 19 18 16 40 40 H 1.09004 * 109.47160 * 84.73594 * 25 23 22 41 41 H 1.08996 * 109.46903 * 324.73573 * 25 23 22 42 42 H 1.08999 * 109.47599 * 204.73174 * 25 23 22 43 43 H 1.09003 * 109.47344 * 69.76196 * 26 23 22 44 44 H 1.09005 * 109.47909 * 189.77447 * 26 23 22 45 45 H 1.09003 * 109.43176 * 309.32539 * 27 26 23 46 46 H 1.08994 * 109.57336 * 189.24176 * 27 26 23 47 47 H 1.08996 * 109.71199 * 315.69126 * 28 21 20 48 48 H 1.09000 * 109.70976 * 76.31255 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 2.0011 -0.4209 3.6855 7 1 2.5621 -1.3382 3.7864 8 6 1.6335 0.2957 4.8161 9 7 1.9682 -0.1430 6.0110 10 14 0.6627 1.8820 4.6417 11 1 -0.7907 1.5781 4.6657 12 1 0.9965 2.7928 5.7660 13 1 1.0104 2.5363 3.3547 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9955 -0.4135 -3.6661 17 8 2.5468 -1.4916 -3.7860 18 6 1.7043 0.3980 -4.8537 19 6 0.7603 1.3823 -4.9652 20 7 0.8217 1.8688 -6.2064 21 6 1.7506 1.2441 -6.8782 22 7 2.3259 0.3227 -6.0787 23 6 3.4111 -0.5758 -6.4783 24 1 3.0100 -1.5715 -6.6674 25 6 4.4551 -0.6470 -5.3621 26 6 4.0603 -0.0297 -7.7547 27 6 2.9750 0.2763 -8.7891 28 6 2.1507 1.4806 -8.3160 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7199 1.2950 33 1 3.1263 -0.7995 1.2056 34 1 1.1484 0.8590 2.3518 35 1 1.7116 0.3579 6.8010 36 1 1.6054 -1.7198 -1.2953 37 1 3.1263 -0.7995 -1.2057 38 1 1.1489 0.8596 -2.3517 39 1 0.0861 1.7081 -4.1869 40 1 4.1518 -1.3935 -4.6280 41 1 4.5366 0.3263 -4.8783 42 1 5.4207 -0.9246 -5.7848 43 1 4.6068 0.8843 -7.5221 44 1 4.7488 -0.7721 -8.1585 45 1 2.3241 -0.5911 -8.8993 46 1 3.4391 0.5072 -9.7479 47 1 1.2586 1.5797 -8.9343 48 1 2.7499 2.3885 -8.3862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753614241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:49 Heat of formation + Delta-G solvation = 25.584403 kcal Electronic energy + Delta-G solvation = -27018.526548 eV Core-core repulsion = 23302.271612 eV Total energy + Delta-G solvation = -3716.254935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.82431 -39.61015 -37.52579 -37.01762 -34.62966 -34.01893 -32.62981 -31.07785 -30.72327 -29.64870 -27.58833 -26.59827 -25.56393 -23.32273 -23.30429 -22.35025 -21.88765 -20.59380 -20.13233 -19.36115 -18.17926 -17.42150 -16.59279 -16.00852 -15.91496 -15.73188 -15.13303 -15.02825 -14.87063 -14.53909 -14.27729 -14.15127 -13.76257 -13.69812 -13.38271 -13.19427 -12.95067 -12.61351 -12.53735 -12.39845 -12.19741 -12.00189 -11.67054 -11.65111 -11.47021 -11.18456 -11.03002 -10.81794 -10.71649 -10.64224 -10.50536 -10.13629 -9.97402 -9.94550 -9.59655 -9.17319 -8.91575 -8.68219 -7.24949 -5.77898 -3.13730 1.09066 2.12989 2.54603 3.04206 3.13183 3.35529 3.37748 3.43976 3.80506 3.99241 4.10374 4.14946 4.48156 4.57534 4.67546 4.71748 4.80647 4.83094 4.89543 5.01652 5.05139 5.13452 5.17422 5.20355 5.25698 5.34000 5.42116 5.50092 5.52251 5.63084 5.65314 5.70456 5.77149 5.83258 5.91529 5.94169 6.08893 6.21553 6.25057 6.38152 6.43745 6.62177 6.72193 6.75259 7.28078 7.64609 7.98150 8.00855 8.40928 9.19770 9.91868 10.11368 11.40479 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.027815 B = 0.002312 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.419415 B =12107.666511 C =12694.084337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.130 3.870 15 N -0.711 5.711 16 C 0.591 3.409 17 O -0.538 6.538 18 C -0.077 4.077 19 C 0.031 3.969 20 N -0.492 5.492 21 C 0.226 3.774 22 N -0.416 5.416 23 C 0.134 3.866 24 H 0.097 0.903 25 C -0.182 4.182 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.035 4.035 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.403 0.597 39 H 0.178 0.822 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 2.195 -32.931 33.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.095 0.905 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.007 3.993 15 N -0.362 5.362 16 C 0.378 3.622 17 O -0.417 6.417 18 C -0.195 4.195 19 C -0.123 4.123 20 N -0.210 5.210 21 C -0.036 4.036 22 N -0.097 5.097 23 C 0.032 3.968 24 H 0.115 0.885 25 C -0.239 4.239 26 C -0.171 4.171 27 C -0.166 4.166 28 C -0.074 4.074 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.238 0.762 39 H 0.195 0.805 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.117 0.883 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.031 1.763 -33.143 33.252 hybrid contribution -0.513 0.975 0.552 1.232 sum 1.518 2.738 -32.591 32.741 Atomic orbital electron populations 1.21821 0.94635 1.02377 1.01330 1.21617 0.96768 1.00632 0.94434 0.90468 1.20543 0.97178 0.94251 0.84270 1.42684 1.67901 1.27101 1.02330 1.19056 1.29581 1.07049 0.81707 0.89180 1.24682 1.00808 0.98639 0.95111 1.69701 1.51285 1.40259 0.96926 0.86547 0.80453 0.84587 0.76922 1.21038 1.21718 1.20365 1.21449 1.00306 0.95407 0.82186 1.45739 1.57344 1.27953 1.05149 1.16715 0.78703 0.84855 0.81956 1.90663 1.42935 1.21720 1.86345 1.20604 1.03969 1.06241 0.88667 1.22688 0.99402 0.94842 0.95386 1.69928 1.18991 1.27072 1.04984 1.23460 0.93805 0.90574 0.95772 1.45369 1.27376 1.28057 1.08936 1.21681 0.86389 0.92869 0.95821 0.88543 1.22601 0.97461 1.04646 0.99225 1.22046 0.98489 1.02875 0.93679 1.21711 0.97476 0.98245 0.99181 1.20296 1.01274 0.99389 0.86470 0.91773 0.93540 0.92262 0.95059 0.95291 0.80602 0.93046 0.90757 0.90985 0.76207 0.80477 0.87320 0.92450 0.91052 0.90478 0.89006 0.90973 0.89639 0.88328 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.94 37.16 0.33 -1.55 16 2 C -0.12 -1.59 2.46 -90.62 -0.22 -1.81 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.17 3.04 5.65 -4.04 -0.02 3.02 16 5 N -0.75 -17.49 5.13 -59.91 -0.31 -17.79 16 6 C -0.24 -6.88 10.47 -15.06 -0.16 -7.03 16 7 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 10 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 14 C 0.13 1.60 5.07 -4.04 -0.02 1.57 16 15 N -0.71 -7.75 5.27 -61.59 -0.32 -8.07 16 16 C 0.59 7.33 7.13 -12.81 -0.09 7.24 16 17 O -0.54 -7.86 13.07 5.20 0.07 -7.79 16 18 C -0.08 -0.90 6.57 -82.35 -0.54 -1.44 16 19 C 0.03 0.34 11.38 -17.36 -0.20 0.15 16 20 N -0.49 -5.90 11.20 -10.36 -0.12 -6.02 16 21 C 0.23 2.30 7.64 -155.32 -1.19 1.11 16 22 N -0.42 -4.36 2.97 -102.74 -0.30 -4.67 16 23 C 0.13 1.13 3.27 -67.83 -0.22 0.91 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 C -0.18 -1.68 8.20 37.16 0.30 -1.37 16 26 C -0.13 -0.69 5.12 -26.59 -0.14 -0.83 16 27 C -0.13 -0.56 5.96 -26.50 -0.16 -0.72 16 28 C -0.04 -0.21 6.33 -27.46 -0.17 -0.39 16 29 H 0.06 0.96 7.18 -51.93 -0.37 0.58 16 30 H 0.05 0.48 7.18 -51.93 -0.37 0.11 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.36 8.10 4.71 -40.82 -0.19 7.91 16 35 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 3.60 6.94 -40.82 -0.28 3.32 16 39 H 0.18 1.48 7.78 -52.49 -0.41 1.07 16 40 H 0.11 1.28 4.91 -51.93 -0.26 1.03 16 41 H 0.06 0.59 8.05 -51.93 -0.42 0.18 16 42 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 43 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -34.60 376.58 -9.64 -44.24 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.80 Total: 6.93 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.59 Total: -1.14 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.28 Total: -65.10 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.60 -9.64 -44.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753614241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.821 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds