Wall clock time and date at job start Tue Mar 31 2020 12:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47634 * 2 1 4 4 C 1.53002 * 109.47367 * 120.00379 * 2 1 3 5 5 N 1.46502 * 109.46710 * 295.00127 * 4 2 1 6 6 C 1.36933 * 119.99870 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00249 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99885 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00114 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99776 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47613 * 59.99741 * 10 8 6 12 12 H 1.48499 * 109.47231 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47223 * 299.99581 * 10 8 6 14 14 C 1.53004 * 109.47091 * 240.00192 * 2 1 3 15 15 N 1.46502 * 109.47308 * 64.99928 * 14 2 1 16 16 C 1.34773 * 120.00053 * 180.02562 * 15 14 2 17 17 O 1.21684 * 119.99619 * 5.61291 * 16 15 14 18 18 C 1.46763 * 119.99736 * 185.61253 * 16 15 14 19 19 C 1.36827 * 126.91627 * 21.81208 * 18 16 15 20 20 N 1.33450 * 107.83640 * 179.97438 * 19 18 16 21 21 C 1.30556 * 109.68800 * 359.97438 * 20 19 18 22 22 N 1.34876 * 108.98677 * 0.05709 * 21 20 19 23 23 C 1.46441 * 124.99554 * 179.87961 * 22 21 20 24 24 H 1.09008 * 109.57915 * 102.76643 * 23 22 21 25 25 C 1.53001 * 109.58226 * 223.02792 * 23 22 21 26 26 C 1.53255 * 108.81768 * 342.96449 * 23 22 21 27 27 C 1.53164 * 109.43938 * 50.23242 * 26 23 22 28 28 C 1.51110 * 127.09911 * 180.32914 * 21 20 19 29 29 H 1.08997 * 109.47402 * 59.99665 * 1 2 3 30 30 H 1.08996 * 109.47634 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46914 * 300.00197 * 1 2 3 32 32 H 1.08994 * 109.46975 * 54.99559 * 4 2 1 33 33 H 1.08996 * 109.47599 * 174.99987 * 4 2 1 34 34 H 0.96998 * 120.00307 * 359.97438 * 5 4 2 35 35 H 0.97002 * 119.99596 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46673 * 304.99966 * 14 2 1 37 37 H 1.08999 * 109.46960 * 185.00290 * 14 2 1 38 38 H 0.96995 * 119.99361 * 0.02562 * 15 14 2 39 39 H 1.08001 * 126.07918 * 359.96392 * 19 18 16 40 40 H 1.09003 * 109.47221 * 33.47965 * 25 23 22 41 41 H 1.09002 * 109.47364 * 153.48420 * 25 23 22 42 42 H 1.09003 * 109.47294 * 273.48315 * 25 23 22 43 43 H 1.09006 * 109.48150 * 170.22353 * 26 23 22 44 44 H 1.09007 * 109.47973 * 290.24014 * 26 23 22 45 45 H 1.08996 * 109.51225 * 50.58027 * 27 26 23 46 46 H 1.09002 * 109.51408 * 170.73371 * 27 26 23 47 47 H 1.08999 * 109.71037 * 283.64800 * 28 21 20 48 48 H 1.09005 * 109.70450 * 44.26616 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0019 -0.4204 3.6855 7 1 2.5630 -1.3377 3.7864 8 6 1.6351 0.2968 4.8160 9 7 0.9518 1.4150 4.6930 10 14 2.1113 -0.3251 6.5118 11 1 3.5904 -0.4157 6.6086 12 1 1.6048 0.6147 7.5440 13 1 1.5178 -1.6686 6.7310 14 6 2.0399 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9955 -0.4136 -3.6660 17 8 2.5368 -1.4966 -3.7869 18 6 1.7162 0.4039 -4.8525 19 6 1.5134 1.7565 -4.8894 20 7 1.2924 2.1022 -6.1593 21 6 1.3461 1.0422 -6.9194 22 7 1.6059 -0.0358 -6.1515 23 6 1.7378 -1.4076 -6.6466 24 1 2.7923 -1.6800 -6.6913 25 6 1.0004 -2.3647 -5.7080 26 6 1.1268 -1.4876 -8.0498 27 6 1.6954 -0.3614 -8.9183 28 6 1.1607 0.9848 -8.4180 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 1.1488 0.8593 2.3518 35 1 0.6958 1.9163 5.4831 36 1 1.6053 -1.7198 -1.2952 37 1 3.1262 -0.7995 -1.2056 38 1 1.1488 0.8594 -2.3517 39 1 1.5291 2.4254 -4.0416 40 1 0.1233 -1.8657 -5.2959 41 1 0.6880 -3.2493 -6.2630 42 1 1.6646 -2.6611 -4.8961 43 1 1.3707 -2.4508 -8.4982 44 1 0.0440 -1.3824 -7.9813 45 1 2.7834 -0.3647 -8.8523 46 1 1.3923 -0.5122 -9.9545 47 1 0.1015 1.0701 -8.6609 48 1 1.7129 1.7986 -8.8881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753614242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:53 Heat of formation + Delta-G solvation = 20.958457 kcal Electronic energy + Delta-G solvation = -26933.043184 eV Core-core repulsion = 23216.587653 eV Total energy + Delta-G solvation = -3716.455532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.77290 -39.52762 -37.48259 -36.85449 -34.48792 -33.97743 -32.58948 -31.03395 -30.34186 -29.46511 -27.54818 -26.41375 -25.32746 -23.36270 -23.26764 -22.37815 -22.10229 -20.50103 -19.97906 -19.27110 -18.05168 -17.01088 -16.53356 -15.92688 -15.90641 -15.54941 -15.09034 -15.01200 -14.78438 -14.57239 -14.20538 -13.99828 -13.75690 -13.58793 -13.33955 -13.07356 -12.84535 -12.58318 -12.49309 -12.25817 -12.06086 -11.96358 -11.64643 -11.61638 -11.13792 -11.04483 -10.89084 -10.71465 -10.64096 -10.54963 -10.40342 -10.08620 -9.92486 -9.89000 -9.67499 -9.09865 -8.87430 -8.63105 -6.92651 -5.76890 -3.05416 1.14334 2.19293 2.59497 3.12970 3.17898 3.44635 3.48959 3.49979 3.84372 4.02509 4.14221 4.18039 4.54776 4.59086 4.70908 4.75460 4.83778 4.94531 5.01790 5.07854 5.16610 5.19075 5.20320 5.28178 5.36442 5.37201 5.45167 5.52949 5.57515 5.68261 5.77786 5.86865 5.93940 5.97489 5.99750 6.11754 6.24817 6.31038 6.38305 6.47066 6.64598 6.75939 6.80175 6.85222 7.36730 7.69848 7.70081 8.08098 8.42190 9.53373 10.10573 10.45300 11.45969 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.034072 B = 0.002124 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.599071 B =13182.318249 C =13677.460752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.129 3.871 15 N -0.710 5.710 16 C 0.591 3.409 17 O -0.540 6.540 18 C -0.078 4.078 19 C 0.033 3.967 20 N -0.492 5.492 21 C 0.225 3.775 22 N -0.417 5.417 23 C 0.134 3.866 24 H 0.096 0.904 25 C -0.180 4.180 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.035 4.035 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.404 0.596 39 H 0.179 0.821 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -3.691 -30.181 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.006 3.994 15 N -0.360 5.360 16 C 0.377 3.623 17 O -0.419 6.419 18 C -0.195 4.195 19 C -0.121 4.121 20 N -0.210 5.210 21 C -0.037 4.037 22 N -0.098 5.098 23 C 0.032 3.968 24 H 0.114 0.886 25 C -0.237 4.237 26 C -0.171 4.171 27 C -0.166 4.166 28 C -0.074 4.074 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.239 0.761 39 H 0.197 0.803 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.728 -3.971 -30.418 30.685 hybrid contribution 0.014 -0.338 1.424 1.464 sum -0.714 -4.309 -28.994 29.321 Atomic orbital electron populations 1.21794 0.94599 1.01949 1.01595 1.21563 0.96781 1.00614 0.94038 0.90351 1.20566 0.96607 0.94195 0.85355 1.42327 1.66951 1.27690 1.00555 1.19186 1.28791 1.05451 0.83662 0.91216 1.24742 1.01013 0.97408 0.97869 1.69646 1.43484 1.16522 1.28624 0.86252 0.78015 0.77690 0.84127 1.21273 1.21703 1.21277 1.21474 1.00222 0.95295 0.82405 1.45751 1.56973 1.28138 1.05173 1.16718 0.78920 0.84594 0.82051 1.90664 1.43750 1.21320 1.86200 1.20637 1.17650 0.95446 0.85803 1.22722 1.02387 0.91656 0.95374 1.69932 1.21020 1.27809 1.02214 1.23455 1.02741 0.81705 0.95782 1.45374 1.49926 1.08893 1.05635 1.21672 1.02035 0.78671 0.94381 0.88595 1.22569 1.01468 0.98387 1.01234 1.22068 1.01482 1.00442 0.93060 1.21705 1.01440 0.93316 1.00154 1.20258 1.03305 0.99005 0.84846 0.93867 0.92833 0.91061 0.96005 0.96115 0.78172 0.93464 0.91059 0.91102 0.76116 0.80345 0.92435 0.91163 0.87441 0.89043 0.90481 0.90999 0.89652 0.88940 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.15 0.33 -1.73 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.11 16 5 N -0.73 -18.15 5.33 -59.91 -0.32 -18.47 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.13 1.71 5.07 -4.04 -0.02 1.69 16 15 N -0.71 -8.29 5.24 -61.59 -0.32 -8.61 16 16 C 0.59 7.68 7.13 -12.82 -0.09 7.59 16 17 O -0.54 -8.18 13.06 5.20 0.07 -8.12 16 18 C -0.08 -0.95 6.53 -82.35 -0.54 -1.49 16 19 C 0.03 0.38 11.39 -17.36 -0.20 0.19 16 20 N -0.49 -6.13 11.20 -10.36 -0.12 -6.25 16 21 C 0.23 2.37 7.64 -155.32 -1.19 1.18 16 22 N -0.42 -4.52 2.96 -102.73 -0.30 -4.83 16 23 C 0.13 1.17 3.27 -67.83 -0.22 0.94 16 24 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 25 C -0.18 -1.69 8.17 37.16 0.30 -1.38 16 26 C -0.13 -0.71 5.12 -26.51 -0.14 -0.85 16 27 C -0.13 -0.59 5.95 -26.52 -0.16 -0.75 16 28 C -0.04 -0.22 6.33 -27.55 -0.17 -0.40 16 29 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.40 3.98 7.10 -40.82 -0.29 3.69 16 39 H 0.18 1.64 7.91 -52.49 -0.42 1.22 16 40 H 0.06 0.61 7.98 -51.93 -0.41 0.19 16 41 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 42 H 0.11 1.29 5.03 -51.93 -0.26 1.03 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.43 8.10 -51.93 -0.42 0.00 16 45 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -33.58 379.92 -10.00 -43.59 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.86 Total: 8.03 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.58 Total: -1.12 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -0.34 Total: -65.50 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.12 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.58 -10.00 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753614242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.544 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds