Wall clock time and date at job start Tue Mar 31 2020 12:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46403 * 2 1 4 4 C 1.52993 * 109.47269 * 239.99998 * 2 1 3 5 5 N 1.46500 * 109.47353 * 64.99552 * 4 2 1 6 6 C 1.36938 * 120.00168 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99949 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99942 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00051 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99764 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47080 * 60.00436 * 10 8 6 12 12 H 1.48502 * 109.46670 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47475 * 299.99936 * 10 8 6 14 14 C 1.52992 * 109.47354 * 119.99325 * 2 1 3 15 15 N 1.46495 * 109.47603 * 295.00415 * 14 2 1 16 16 C 1.34778 * 120.00286 * 179.97438 * 15 14 2 17 17 O 1.21686 * 120.00038 * 5.00209 * 16 15 14 18 18 C 1.46763 * 120.00255 * 185.00650 * 16 15 14 19 19 C 1.36831 * 126.91128 * 337.89672 * 18 16 15 20 20 N 1.33461 * 107.83676 * 180.02562 * 19 18 16 21 21 C 1.30549 * 109.68137 * 0.02562 * 20 19 18 22 22 N 1.34874 * 108.99129 * 359.94513 * 21 20 19 23 23 C 1.46442 * 124.99255 * 180.09431 * 22 21 20 24 24 H 1.09001 * 109.58059 * 257.12372 * 23 22 21 25 25 C 1.53001 * 109.58069 * 136.85329 * 23 22 21 26 26 C 1.53270 * 108.82000 * 17.05052 * 23 22 21 27 27 C 1.53146 * 109.44439 * 309.77818 * 26 23 22 28 28 C 1.51120 * 127.09114 * 179.91086 * 21 20 19 29 29 H 1.09000 * 109.47254 * 299.99765 * 1 2 3 30 30 H 1.08994 * 109.47619 * 60.00788 * 1 2 3 31 31 H 1.08999 * 109.46733 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47514 * 184.99500 * 4 2 1 33 33 H 1.08994 * 109.47126 * 304.99456 * 4 2 1 34 34 H 0.97005 * 120.00197 * 0.02562 * 5 4 2 35 35 H 0.97003 * 120.00116 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47419 * 175.00102 * 14 2 1 37 37 H 1.09002 * 109.47416 * 55.00537 * 14 2 1 38 38 H 0.96998 * 120.00225 * 0.02562 * 15 14 2 39 39 H 1.07997 * 126.08189 * 0.02562 * 19 18 16 40 40 H 1.08995 * 109.47055 * 84.73454 * 25 23 22 41 41 H 1.09001 * 109.47247 * 324.72974 * 25 23 22 42 42 H 1.08999 * 109.46982 * 204.73613 * 25 23 22 43 43 H 1.09001 * 109.47232 * 69.75540 * 26 23 22 44 44 H 1.08994 * 109.47919 * 189.77404 * 26 23 22 45 45 H 1.09002 * 109.49783 * 309.39768 * 27 26 23 46 46 H 1.09001 * 109.55365 * 189.27841 * 27 26 23 47 47 H 1.08998 * 109.70568 * 315.73092 * 28 21 20 48 48 H 1.09008 * 109.70293 * 76.34554 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 2.0010 -0.4209 -3.6856 7 1 2.5621 -1.3382 -3.7864 8 6 1.6342 0.2962 -4.8161 9 7 0.9509 1.4144 -4.6931 10 14 2.1104 -0.3257 -6.5119 11 1 1.5169 -1.6692 -6.7311 12 1 1.6028 0.6135 -7.5441 13 1 3.5895 -0.4161 -6.6088 14 6 2.0400 -0.7211 1.2492 15 7 1.6525 0.0355 2.4423 16 6 1.9957 -0.4133 3.6660 17 8 2.7042 -1.3964 3.7768 18 6 1.5148 0.2835 4.8648 19 6 1.0900 1.5816 4.9458 20 7 0.7392 1.8187 6.2115 21 6 0.9212 0.7421 6.9272 22 7 1.4007 -0.2369 6.1331 23 6 1.7275 -1.5937 6.5769 24 1 2.8080 -1.6943 6.6792 25 6 1.2130 -2.6064 5.5519 26 6 1.0551 -1.8465 7.9308 27 6 1.3764 -0.6911 8.8833 28 6 0.6534 0.5741 8.4050 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1264 -0.7994 -1.2056 33 1 1.6055 -1.7197 -1.2950 34 1 1.1488 0.8594 -2.3518 35 1 0.6948 1.9157 -5.4831 36 1 3.1263 -0.7993 1.2056 37 1 1.6055 -1.7197 1.2953 38 1 1.1482 0.8592 2.3518 39 1 1.0462 2.2886 4.1306 40 1 1.9492 -2.7246 4.7569 41 1 0.2745 -2.2493 5.1279 42 1 1.0487 -3.5666 6.0407 43 1 -0.0241 -1.9146 7.7935 44 1 1.4274 -2.7799 8.3529 45 1 2.4521 -0.5147 8.8914 46 1 1.0413 -0.9436 9.8893 47 1 1.0309 1.4407 8.9478 48 1 -0.4184 0.4715 8.5749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753614243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:55 Heat of formation + Delta-G solvation = 21.302593 kcal Electronic energy + Delta-G solvation = -26948.997520 eV Core-core repulsion = 23232.556911 eV Total energy + Delta-G solvation = -3716.440609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.77452 -39.53661 -37.48123 -36.85949 -34.49020 -33.97318 -32.59233 -31.03391 -30.34544 -29.47046 -27.54027 -26.41313 -25.33033 -23.36245 -23.26956 -22.37716 -22.11250 -20.49804 -19.98370 -19.27520 -18.05936 -17.01715 -16.53928 -15.92028 -15.87842 -15.59260 -15.07818 -15.03683 -14.77168 -14.58612 -14.24547 -13.93242 -13.76126 -13.58379 -13.34637 -13.07383 -12.85994 -12.58701 -12.48353 -12.26029 -12.06544 -11.96693 -11.64102 -11.62121 -11.15063 -11.04900 -10.88950 -10.71109 -10.64910 -10.54594 -10.40743 -10.08669 -9.92629 -9.88772 -9.67625 -9.09824 -8.87539 -8.62802 -6.92757 -5.76967 -3.05526 1.14400 2.18044 2.59783 3.10321 3.19992 3.44560 3.48857 3.49894 3.84424 4.02741 4.14103 4.18145 4.54048 4.58941 4.70994 4.75561 4.83977 4.94205 5.01425 5.07278 5.16821 5.18705 5.20483 5.28423 5.36596 5.37297 5.45209 5.53188 5.57347 5.68340 5.76580 5.87068 5.92867 5.97482 6.00456 6.11751 6.24902 6.30495 6.37994 6.47188 6.64537 6.75845 6.80029 6.84863 7.36066 7.69737 7.69834 8.07379 8.42086 9.53267 10.10464 10.45174 11.45890 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.033950 B = 0.002133 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.541918 B =13124.993359 C =13646.436580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.130 3.870 15 N -0.709 5.709 16 C 0.591 3.409 17 O -0.540 6.540 18 C -0.077 4.077 19 C 0.032 3.968 20 N -0.491 5.491 21 C 0.225 3.775 22 N -0.416 5.416 23 C 0.135 3.865 24 H 0.096 0.904 25 C -0.182 4.182 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.035 4.035 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.179 0.821 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 -4.468 29.973 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.097 0.903 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.006 3.994 15 N -0.360 5.360 16 C 0.377 3.623 17 O -0.419 6.419 18 C -0.195 4.195 19 C -0.123 4.123 20 N -0.209 5.209 21 C -0.037 4.037 22 N -0.098 5.098 23 C 0.033 3.967 24 H 0.114 0.886 25 C -0.239 4.239 26 C -0.171 4.171 27 C -0.166 4.166 28 C -0.074 4.074 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.239 0.761 39 H 0.196 0.804 40 H 0.127 0.873 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.117 0.883 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.126 -4.742 30.219 30.609 hybrid contribution 0.138 -0.289 -1.440 1.475 sum -0.988 -5.031 28.779 29.232 Atomic orbital electron populations 1.21799 0.94588 1.01944 1.01624 1.21562 0.96779 1.00631 0.94032 0.90343 1.20565 0.96617 0.94182 0.85355 1.42329 1.66973 1.27672 1.00550 1.19186 1.28809 1.05445 0.83657 0.91217 1.24741 1.01011 0.97402 0.97869 1.69643 1.43474 1.16524 1.28630 0.86252 0.78018 0.77691 0.84131 1.21281 1.21701 1.21265 1.21469 1.00433 0.95053 0.82422 1.45748 1.57187 1.27937 1.05149 1.16720 0.80234 0.83218 0.82089 1.90656 1.37593 1.26926 1.86716 1.20617 1.15494 0.96446 0.86900 1.22711 1.00878 0.93453 0.95214 1.69931 1.22138 1.25384 1.03495 1.23456 1.00645 0.83970 0.95628 1.45360 1.46024 1.11676 1.06724 1.21675 1.01078 0.78907 0.95090 0.88577 1.22602 1.03270 0.97534 1.00520 1.22065 1.01888 0.99863 0.93247 1.21724 1.01366 0.93814 0.99705 1.20284 1.02162 0.99497 0.85463 0.93832 0.91053 0.92851 0.96106 0.96021 0.78171 0.93460 0.90975 0.91194 0.76128 0.80390 0.87315 0.92446 0.91117 0.90480 0.89050 0.90980 0.89667 0.88332 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.66 2.46 -90.63 -0.22 -1.88 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.14 5.65 -4.05 -0.02 3.11 16 5 N -0.73 -18.15 5.33 -59.91 -0.32 -18.47 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.13 1.71 5.07 -4.05 -0.02 1.69 16 15 N -0.71 -8.29 5.27 -61.60 -0.32 -8.61 16 16 C 0.59 7.69 7.13 -12.82 -0.09 7.59 16 17 O -0.54 -8.18 13.07 5.20 0.07 -8.11 16 18 C -0.08 -0.94 6.57 -82.35 -0.54 -1.48 16 19 C 0.03 0.37 11.38 -17.35 -0.20 0.17 16 20 N -0.49 -6.11 11.20 -10.35 -0.12 -6.23 16 21 C 0.23 2.37 7.64 -155.32 -1.19 1.18 16 22 N -0.42 -4.52 2.97 -102.72 -0.30 -4.83 16 23 C 0.13 1.17 3.27 -67.82 -0.22 0.95 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.18 -1.72 8.20 37.16 0.30 -1.42 16 26 C -0.13 -0.72 5.13 -26.52 -0.14 -0.86 16 27 C -0.13 -0.59 5.96 -26.47 -0.16 -0.75 16 28 C -0.04 -0.22 6.33 -27.49 -0.17 -0.40 16 29 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 30 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 3.97 6.94 -40.82 -0.28 3.69 16 39 H 0.18 1.60 7.78 -52.49 -0.41 1.20 16 40 H 0.11 1.32 4.91 -51.93 -0.26 1.06 16 41 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 42 H 0.07 0.51 7.93 -51.93 -0.41 0.10 16 43 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -33.60 379.71 -9.99 -43.60 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.84 Total: 8.04 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.58 Total: -1.16 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.34 Total: -65.48 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.60 -9.99 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753614243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.901 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds