Wall clock time and date at job start Tue Mar 31 2020 12:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.45300 * 2 1 4 4 C 1.53133 * 109.46344 * 240.02246 * 2 1 3 5 5 C 1.53387 * 109.25548 * 170.19044 * 4 2 1 6 6 C 1.51096 * 108.19774 * 48.93733 * 5 4 2 7 7 N 1.29796 * 127.17257 * 164.00976 * 6 5 4 8 8 C 1.35893 * 108.84635 * 180.10353 * 7 6 5 9 9 C 1.47330 * 126.20880 * 179.97438 * 8 7 6 10 10 O 1.21619 * 119.99993 * 186.28363 * 9 8 7 11 11 N 1.34776 * 120.00040 * 6.27736 * 9 8 7 12 12 C 1.46506 * 119.99637 * 5.38842 * 11 9 8 13 13 C 1.46493 * 119.99969 * 185.38773 * 11 9 8 14 14 C 1.53000 * 109.46856 * 269.99773 * 13 11 9 15 15 C 1.53007 * 109.47174 * 180.02562 * 14 13 11 16 16 N 1.46502 * 109.47068 * 180.02562 * 15 14 13 17 17 C 1.36935 * 119.99300 * 179.72689 * 16 15 14 18 18 H 1.07995 * 120.00633 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99610 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00070 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47421 * 60.00305 * 21 19 17 23 23 H 1.48508 * 109.47139 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47328 * 300.00301 * 21 19 17 25 25 C 1.36569 * 107.58057 * 0.24798 * 8 7 6 26 26 N 1.34875 * 106.78537 * 359.55219 * 25 8 7 27 27 C 1.46575 * 127.50023 * 180.25223 * 26 25 8 28 28 H 1.09001 * 109.47374 * 300.03717 * 1 2 3 29 29 H 1.08998 * 109.47143 * 60.03585 * 1 2 3 30 30 H 1.09002 * 109.47615 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.50248 * 290.11625 * 4 2 1 32 32 H 1.08991 * 109.50854 * 50.20772 * 4 2 1 33 33 H 1.09001 * 109.70891 * 289.25599 * 5 4 2 34 34 H 1.09003 * 109.72125 * 168.61514 * 5 4 2 35 35 H 1.09000 * 109.46966 * 275.36084 * 12 11 9 36 36 H 1.08992 * 109.47343 * 35.36507 * 12 11 9 37 37 H 1.09004 * 109.46603 * 155.36582 * 12 11 9 38 38 H 1.09004 * 109.47263 * 150.00461 * 13 11 9 39 39 H 1.08997 * 109.47537 * 29.99913 * 13 11 9 40 40 H 1.09004 * 109.47122 * 60.00880 * 14 13 11 41 41 H 1.09000 * 109.47660 * 300.00304 * 14 13 11 42 42 H 1.08997 * 109.46931 * 59.99906 * 15 14 13 43 43 H 1.09000 * 109.47005 * 300.00619 * 15 14 13 44 44 H 0.96997 * 120.00287 * 359.97438 * 16 15 14 45 45 H 0.96996 * 120.00242 * 179.97438 * 20 19 17 46 46 H 1.08001 * 126.60707 * 179.67422 * 25 8 7 47 47 H 1.09002 * 109.58600 * 282.89403 * 27 26 25 48 48 H 1.09003 * 109.58560 * 43.30734 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0402 -0.7214 -1.2507 5 6 3.5541 -0.5085 -1.3752 6 6 4.1860 -0.8198 -0.0385 7 7 5.4420 -1.0408 0.2028 8 6 5.5977 -1.2843 1.5306 9 6 6.8664 -1.5819 2.2179 10 8 6.8625 -1.8950 3.3931 11 7 8.0314 -1.5073 1.5444 12 6 8.0492 -1.0171 0.1639 13 6 9.2798 -1.9165 2.1926 14 6 9.9061 -0.7123 2.8988 15 6 11.2103 -1.1394 3.5754 16 7 11.8096 0.0134 4.2521 17 6 12.9875 -0.1303 4.9356 18 1 13.4744 -1.0934 4.9761 19 6 13.5557 0.9622 5.5764 20 7 12.9621 2.1359 5.5275 21 14 15.1622 0.7662 6.5093 22 1 16.2227 0.3053 5.5776 23 1 15.5542 2.0713 7.0997 24 1 14.9865 -0.2339 7.5929 25 6 4.3639 -1.2091 2.1112 26 7 3.4886 -0.9126 1.1289 27 6 2.0405 -0.7217 1.2518 28 1 -0.3634 0.5144 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3634 -1.0277 0.0005 31 1 1.8283 -1.7875 -1.1678 32 1 1.5415 -0.3186 -2.1321 33 1 3.7585 0.5273 -1.6465 34 1 3.9579 -1.1753 -2.1371 35 1 7.8225 -1.8382 -0.5162 36 1 7.3022 -0.2320 0.0474 37 1 9.0364 -0.6164 -0.0666 38 1 9.9716 -2.2971 1.4412 39 1 9.0708 -2.6979 2.9231 40 1 9.2143 -0.3317 3.6503 41 1 10.1151 0.0692 2.1683 42 1 11.9018 -1.5199 2.8237 43 1 11.0016 -1.9211 4.3058 44 1 11.3703 0.8776 4.2191 45 1 13.3590 2.8992 5.9756 46 1 4.1338 -1.3566 3.1561 47 1 1.5503 -1.6912 1.3401 48 1 1.8249 -0.1193 2.1343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754380739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:27 Heat of formation + Delta-G solvation = 30.632452 kcal Electronic energy + Delta-G solvation = -26413.440319 eV Core-core repulsion = 22697.404283 eV Total energy + Delta-G solvation = -3716.036036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70648 -39.44724 -37.66276 -35.93793 -34.67304 -33.78576 -32.34695 -31.77124 -29.74025 -29.02019 -27.16926 -26.59920 -25.30911 -24.33802 -23.17692 -22.14219 -21.65769 -20.72833 -19.55529 -19.10059 -17.47995 -16.93530 -16.54833 -16.29906 -15.91237 -15.37783 -15.05228 -14.77169 -14.54950 -14.40274 -14.16422 -14.09087 -13.80547 -13.40922 -13.23720 -13.03072 -12.91883 -12.72284 -12.67671 -12.31135 -12.09991 -11.79072 -11.70761 -11.64602 -11.48504 -11.37690 -10.80641 -10.75079 -10.62710 -10.30691 -10.21809 -10.02782 -9.95788 -9.72662 -9.59178 -8.75645 -8.71484 -8.32294 -6.79973 -5.65409 -2.93594 1.47570 2.22435 2.27792 3.23752 3.51851 3.55138 3.56901 3.57738 3.71950 3.86597 3.96457 4.04554 4.49534 4.58684 4.69327 4.71303 4.76383 4.79370 4.81368 4.89936 5.07748 5.23328 5.24458 5.29767 5.37466 5.42568 5.44953 5.50007 5.53929 5.59504 5.67495 5.82777 5.83805 5.88701 6.02934 6.13333 6.26644 6.32900 6.45606 6.55385 6.69680 6.84933 7.02797 7.05385 7.52909 7.68773 7.79622 8.40020 8.53777 9.64156 10.24309 10.59144 11.57774 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.001978 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.471497 B =14151.688809 C =14390.294599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.121 4.121 5 C -0.033 4.033 6 C 0.204 3.796 7 N -0.451 5.451 8 C -0.057 4.057 9 C 0.598 3.402 10 O -0.542 6.542 11 N -0.602 5.602 12 C 0.090 3.910 13 C 0.121 3.879 14 C -0.139 4.139 15 C 0.156 3.844 16 N -0.733 5.733 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.018 4.018 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.035 3.965 26 N -0.454 5.454 27 C 0.105 3.895 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.188 0.812 47 H 0.088 0.912 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.588 -6.106 -18.382 36.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.072 4.072 6 C -0.060 4.060 7 N -0.171 5.171 8 C -0.185 4.185 9 C 0.386 3.614 10 O -0.419 6.419 11 N -0.334 5.334 12 C -0.053 4.053 13 C -0.001 4.001 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.377 5.377 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.103 4.103 26 N -0.136 5.136 27 C -0.017 4.017 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.205 0.795 47 H 0.106 0.894 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.901 -6.329 -18.241 35.593 hybrid contribution 0.154 0.292 1.191 1.236 sum -29.746 -6.037 -17.050 34.814 Atomic orbital electron populations 1.21769 0.93035 1.02623 1.02854 1.21486 0.97103 1.00453 0.93543 0.89666 1.21774 0.94710 1.01400 0.98048 1.20228 0.93697 1.03548 0.89704 1.23615 0.87353 1.05531 0.89461 1.70622 1.14856 1.17333 1.14335 1.20621 0.93804 1.13635 0.90467 1.16949 0.82026 0.77209 0.85238 1.90812 1.86852 1.49217 1.15018 1.47661 1.06671 1.64257 1.14763 1.21911 1.02278 1.00106 0.80968 1.21494 0.83741 0.97720 0.97194 1.22056 0.98067 0.97637 0.99986 1.20553 0.91084 0.91430 0.94118 1.42358 1.25796 1.07620 1.61954 1.19224 0.98207 0.95071 1.24295 0.91195 1.24756 0.99313 0.95657 1.01586 1.69663 1.40331 0.99798 1.48653 0.86238 0.83536 0.76494 0.79757 1.21311 1.21745 1.21305 1.22438 0.88883 1.03733 0.95289 1.45301 1.08537 1.51721 1.08047 1.22179 0.76810 1.02282 1.00410 0.91986 0.91453 0.92066 0.91036 0.89724 0.89047 0.88415 0.92766 0.89602 0.91902 0.90502 0.89978 0.91508 0.92045 0.96409 0.96213 0.78323 0.93563 0.79509 0.89371 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.26 9.17 37.16 0.34 0.09 16 2 C -0.11 -0.34 2.73 -90.43 -0.25 -0.59 16 3 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 4 C -0.12 -0.39 5.25 -26.46 -0.14 -0.53 16 5 C -0.03 -0.18 6.33 -27.49 -0.17 -0.35 16 6 C 0.20 1.93 7.64 -154.64 -1.18 0.75 16 7 N -0.45 -5.63 8.04 -7.01 -0.06 -5.69 16 8 C -0.06 -0.80 6.59 -82.97 -0.55 -1.34 16 9 C 0.60 10.08 7.65 -12.56 -0.10 9.99 16 10 O -0.54 -10.73 16.52 5.26 0.09 -10.64 16 11 N -0.60 -9.34 2.87 -182.89 -0.53 -9.87 16 12 C 0.09 1.15 9.27 59.85 0.56 1.70 16 13 C 0.12 1.94 5.34 -4.05 -0.02 1.92 16 14 C -0.14 -2.64 5.65 -26.73 -0.15 -2.79 16 15 C 0.16 3.49 6.26 -4.04 -0.03 3.46 16 16 N -0.73 -20.34 5.60 -59.91 -0.34 -20.67 16 17 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 18 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 20 N -0.94 -29.81 13.06 55.49 0.72 -29.09 16 21 Si 0.91 23.45 29.55 -169.99 -5.02 18.42 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.04 0.40 11.33 -16.82 -0.19 0.21 16 26 N -0.45 -3.93 3.11 -113.42 -0.35 -4.29 16 27 C 0.11 0.49 6.25 -3.87 -0.02 0.46 16 28 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.08 0.15 8.12 -51.93 -0.42 -0.27 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.09 1.12 5.91 -51.93 -0.31 0.82 16 37 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 38 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 39 H 0.08 1.39 7.50 -51.93 -0.39 1.00 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.38 11.17 7.67 -40.82 -0.31 10.85 16 45 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 47 H 0.09 0.32 8.12 -51.93 -0.42 -0.11 16 48 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -37.30 388.44 -9.93 -47.23 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.15 Total: 3.62 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -2.15 Total: 5.11 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.55 Total: -69.60 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.30 -9.93 -47.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754380739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.860 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds