Wall clock time and date at job start Tue Mar 31 2020 12:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.45300 * 2 1 4 4 C 1.53133 * 109.46344 * 240.02246 * 2 1 3 5 5 C 1.53387 * 109.25548 * 170.19044 * 4 2 1 6 6 C 1.51096 * 108.19774 * 48.93733 * 5 4 2 7 7 N 1.29796 * 127.17257 * 164.00976 * 6 5 4 8 8 C 1.35893 * 108.84635 * 180.10353 * 7 6 5 9 9 C 1.47330 * 126.20880 * 179.97438 * 8 7 6 10 10 O 1.21619 * 119.99993 * 186.28363 * 9 8 7 11 11 N 1.34776 * 120.00040 * 6.27736 * 9 8 7 12 12 C 1.46506 * 119.99637 * 5.38842 * 11 9 8 13 13 C 1.46493 * 119.99969 * 185.38773 * 11 9 8 14 14 C 1.53000 * 109.46856 * 269.99773 * 13 11 9 15 15 C 1.53007 * 109.47174 * 180.02562 * 14 13 11 16 16 N 1.46502 * 109.47068 * 180.02562 * 15 14 13 17 17 C 1.36935 * 119.99300 * 179.72689 * 16 15 14 18 18 H 1.07995 * 120.00633 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99610 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00070 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47421 * 60.00305 * 21 19 17 23 23 H 1.48508 * 109.47139 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47328 * 300.00301 * 21 19 17 25 25 C 1.36569 * 107.58057 * 0.24798 * 8 7 6 26 26 N 1.34875 * 106.78537 * 359.55219 * 25 8 7 27 27 C 1.46575 * 127.50023 * 180.25223 * 26 25 8 28 28 H 1.09001 * 109.47374 * 300.03717 * 1 2 3 29 29 H 1.08998 * 109.47143 * 60.03585 * 1 2 3 30 30 H 1.09002 * 109.47615 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.50248 * 290.11625 * 4 2 1 32 32 H 1.08991 * 109.50854 * 50.20772 * 4 2 1 33 33 H 1.09001 * 109.70891 * 289.25599 * 5 4 2 34 34 H 1.09003 * 109.72125 * 168.61514 * 5 4 2 35 35 H 1.09000 * 109.46966 * 275.36084 * 12 11 9 36 36 H 1.08992 * 109.47343 * 35.36507 * 12 11 9 37 37 H 1.09004 * 109.46603 * 155.36582 * 12 11 9 38 38 H 1.09004 * 109.47263 * 150.00461 * 13 11 9 39 39 H 1.08997 * 109.47537 * 29.99913 * 13 11 9 40 40 H 1.09004 * 109.47122 * 60.00880 * 14 13 11 41 41 H 1.09000 * 109.47660 * 300.00304 * 14 13 11 42 42 H 1.08997 * 109.46931 * 59.99906 * 15 14 13 43 43 H 1.09000 * 109.47005 * 300.00619 * 15 14 13 44 44 H 0.96997 * 120.00287 * 359.97438 * 16 15 14 45 45 H 0.96996 * 120.00242 * 179.97438 * 20 19 17 46 46 H 1.08001 * 126.60707 * 179.67422 * 25 8 7 47 47 H 1.09002 * 109.58600 * 282.89403 * 27 26 25 48 48 H 1.09003 * 109.58560 * 43.30734 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0402 -0.7214 -1.2507 5 6 3.5541 -0.5085 -1.3752 6 6 4.1860 -0.8198 -0.0385 7 7 5.4420 -1.0408 0.2028 8 6 5.5977 -1.2843 1.5306 9 6 6.8664 -1.5819 2.2179 10 8 6.8625 -1.8950 3.3931 11 7 8.0314 -1.5073 1.5444 12 6 8.0492 -1.0171 0.1639 13 6 9.2798 -1.9165 2.1926 14 6 9.9061 -0.7123 2.8988 15 6 11.2103 -1.1394 3.5754 16 7 11.8096 0.0134 4.2521 17 6 12.9875 -0.1303 4.9356 18 1 13.4744 -1.0934 4.9761 19 6 13.5557 0.9622 5.5764 20 7 12.9621 2.1359 5.5275 21 14 15.1622 0.7662 6.5093 22 1 16.2227 0.3053 5.5776 23 1 15.5542 2.0713 7.0997 24 1 14.9865 -0.2339 7.5929 25 6 4.3639 -1.2091 2.1112 26 7 3.4886 -0.9126 1.1289 27 6 2.0405 -0.7217 1.2518 28 1 -0.3634 0.5144 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3634 -1.0277 0.0005 31 1 1.8283 -1.7875 -1.1678 32 1 1.5415 -0.3186 -2.1321 33 1 3.7585 0.5273 -1.6465 34 1 3.9579 -1.1753 -2.1371 35 1 7.8225 -1.8382 -0.5162 36 1 7.3022 -0.2320 0.0474 37 1 9.0364 -0.6164 -0.0666 38 1 9.9716 -2.2971 1.4412 39 1 9.0708 -2.6979 2.9231 40 1 9.2143 -0.3317 3.6503 41 1 10.1151 0.0692 2.1683 42 1 11.9018 -1.5199 2.8237 43 1 11.0016 -1.9211 4.3058 44 1 11.3703 0.8776 4.2191 45 1 13.3590 2.8992 5.9756 46 1 4.1338 -1.3566 3.1561 47 1 1.5503 -1.6912 1.3401 48 1 1.8249 -0.1193 2.1343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754380739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:27 Heat of formation + Delta-G solvation = 7.209787 kcal Electronic energy + Delta-G solvation = -26414.456002 eV Core-core repulsion = 22697.404283 eV Total energy + Delta-G solvation = -3717.051719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.47542 -40.66494 -38.12797 -37.50217 -36.39802 -34.51426 -33.99255 -32.59254 -31.49792 -29.79045 -28.03608 -27.69229 -26.66738 -25.08449 -24.62663 -23.23301 -22.53577 -22.18960 -20.19428 -20.05908 -19.15851 -18.37349 -17.45904 -17.14807 -17.05917 -16.52649 -16.27663 -15.93468 -15.53432 -15.40202 -15.30332 -15.13973 -14.87766 -14.68140 -14.45730 -14.06588 -13.94207 -13.58282 -13.43461 -13.32078 -13.11295 -13.08345 -12.74353 -12.72183 -12.43833 -12.41929 -12.09765 -12.00480 -11.84156 -11.81114 -11.77727 -11.66024 -11.31493 -10.94486 -10.89775 -10.64454 -9.79171 -9.40034 -9.03748 -7.96310 -5.26933 0.51628 1.36034 1.45800 1.50877 1.56813 1.60885 2.09424 2.45308 2.55997 3.11782 3.36435 3.41960 3.58324 3.69900 3.81671 3.85882 4.00945 4.08686 4.24731 4.25901 4.36659 4.38922 4.43327 4.47233 4.54584 4.57113 4.60523 4.70305 4.72687 4.78244 4.90061 4.91069 4.94661 5.00519 5.06175 5.11190 5.16523 5.28161 5.29206 5.31174 5.41026 5.43953 5.46890 5.61854 6.04932 6.25154 6.38721 6.78466 7.17325 7.30290 8.05276 8.29707 9.27550 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.001978 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.471497 B =14151.688809 C =14390.294599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.080 0.920 4 C -0.116 4.116 5 C -0.033 4.033 6 C 0.207 3.793 7 N -0.475 5.475 8 C -0.094 4.094 9 C 0.589 3.411 10 O -0.585 6.585 11 N -0.604 5.604 12 C 0.095 3.905 13 C 0.129 3.871 14 C -0.120 4.120 15 C 0.156 3.844 16 N -0.749 5.749 17 C -0.251 4.251 18 H 0.079 0.921 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.982 3.018 22 H -0.273 1.273 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.039 3.961 26 N -0.448 5.448 27 C 0.096 3.904 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.017 0.983 44 H 0.371 0.629 45 H 0.252 0.748 46 H 0.196 0.804 47 H 0.103 0.897 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.814 -6.654 -20.126 38.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.072 4.072 6 C -0.057 4.057 7 N -0.195 5.195 8 C -0.222 4.222 9 C 0.379 3.621 10 O -0.466 6.466 11 N -0.334 5.334 12 C -0.047 4.047 13 C 0.006 3.994 14 C -0.159 4.159 15 C 0.029 3.971 16 N -0.392 5.392 17 C -0.383 4.383 18 H 0.097 0.903 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.810 3.190 22 H -0.199 1.199 23 H -0.219 1.219 24 H -0.204 1.204 25 C -0.102 4.102 26 N -0.128 5.128 27 C -0.024 4.024 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.203 0.797 45 H 0.061 0.939 46 H 0.213 0.787 47 H 0.121 0.879 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -31.154 -6.910 -20.041 37.682 hybrid contribution 0.409 0.455 1.669 1.777 sum -30.745 -6.455 -18.372 36.393 Atomic orbital electron populations 1.21739 0.91603 1.03121 1.03347 1.21478 0.98088 0.99830 0.92695 0.90182 1.21784 0.93040 1.01600 0.98943 1.20461 0.94998 1.04230 0.87472 1.24424 0.86805 1.03462 0.91008 1.70535 1.16752 1.18692 1.13487 1.20399 0.93406 1.16675 0.91670 1.17443 0.83262 0.76442 0.84949 1.90765 1.87630 1.51390 1.16848 1.47770 1.06095 1.63902 1.15650 1.21986 1.02825 1.00380 0.79498 1.21372 0.84555 0.95811 0.97690 1.21851 0.95989 0.98940 0.99141 1.20697 0.92498 0.89743 0.94142 1.42608 1.25623 1.08498 1.62459 1.19680 0.98895 0.95493 1.24191 0.90326 1.25711 1.03238 0.95348 1.02970 1.69841 1.42122 1.00557 1.49828 0.85087 0.79117 0.76359 0.78431 1.19900 1.21938 1.20381 1.22590 0.88753 1.02714 0.96149 1.45551 1.09870 1.50270 1.07096 1.22580 0.74348 1.03625 1.01895 0.91830 0.90687 0.91553 0.91003 0.87515 0.88061 0.87719 0.91621 0.89999 0.90728 0.87453 0.91125 0.94444 0.91798 0.94670 0.96536 0.79736 0.93915 0.78706 0.87907 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.09 9.17 71.98 0.66 0.57 16 2 C -0.10 -0.39 2.73 -10.67 -0.03 -0.42 16 3 H 0.08 0.43 8.11 -2.39 -0.02 0.41 16 4 C -0.12 -0.41 5.25 30.77 0.16 -0.25 16 5 C -0.03 -0.28 6.33 30.10 0.19 -0.09 16 6 C 0.21 3.71 7.64 138.05 1.05 4.76 16 7 N -0.47 -11.73 8.04 -176.08 -1.41 -13.15 16 8 C -0.09 -2.71 6.59 40.52 0.27 -2.44 16 9 C 0.59 20.68 7.65 86.64 0.66 21.34 16 10 O -0.59 -24.48 16.52 -4.09 -0.07 -24.54 16 11 N -0.60 -18.96 2.87 -850.78 -2.44 -21.40 16 12 C 0.10 2.36 9.27 127.77 1.19 3.54 16 13 C 0.13 4.13 5.34 86.38 0.46 4.59 16 14 C -0.12 -4.67 5.65 30.60 0.17 -4.50 16 15 C 0.16 7.00 6.26 86.38 0.54 7.54 16 16 N -0.75 -42.24 5.60 -343.44 -1.92 -44.16 16 17 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 19 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 20 N -0.97 -63.00 13.06 21.65 0.28 -62.72 16 21 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.04 0.90 11.33 83.84 0.95 1.85 16 26 N -0.45 -7.28 3.11 -512.76 -1.60 -8.88 16 27 C 0.10 0.70 6.25 86.45 0.54 1.24 16 28 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.07 0.29 8.12 -2.38 -0.02 0.27 16 32 H 0.11 -0.03 8.12 -2.39 -0.02 -0.05 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 36 H 0.08 2.13 5.91 -2.39 -0.01 2.12 16 37 H 0.07 1.65 8.03 -2.39 -0.02 1.63 16 38 H 0.11 2.78 8.07 -2.38 -0.02 2.76 16 39 H 0.07 2.44 7.50 -2.39 -0.02 2.42 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.37 22.30 7.67 -92.71 -0.71 21.59 16 45 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 47 H 0.10 0.49 8.12 -2.39 -0.02 0.47 16 48 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -82.25 388.44 3.22 -79.03 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.23 Total: 26.46 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 8.12 Total: 19.04 kcal Atomic # 7 Polarization: -143.21 SS G_CDS: -7.10 Total: -150.31 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.07 Total: -24.54 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -82.25 3.22 -79.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754380739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.239 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds