Wall clock time and date at job start Tue Mar 31 2020 12:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46063 * 2 1 4 4 C 1.53136 * 109.45393 * 119.97117 * 2 1 3 5 5 C 1.53388 * 109.25576 * 189.81311 * 4 2 1 6 6 C 1.51103 * 108.19125 * 311.05160 * 5 4 2 7 7 N 1.29793 * 127.17737 * 195.96091 * 6 5 4 8 8 C 1.35892 * 108.85371 * 179.90500 * 7 6 5 9 9 C 1.47318 * 126.21340 * 180.02562 * 8 7 6 10 10 O 1.21625 * 120.00181 * 173.50390 * 9 8 7 11 11 N 1.34783 * 120.00194 * 353.50598 * 9 8 7 12 12 C 1.46504 * 119.99785 * 3.38308 * 11 9 8 13 13 C 1.46497 * 120.00248 * 183.38271 * 11 9 8 14 14 C 1.53001 * 109.47174 * 89.99948 * 13 11 9 15 15 C 1.52998 * 109.46933 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.46988 * 180.02562 * 15 14 13 17 17 C 1.36940 * 120.00024 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99986 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99928 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99903 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47210 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46877 * 120.00479 * 21 19 17 24 24 H 1.48503 * 109.47205 * 240.00404 * 21 19 17 25 25 C 1.36573 * 107.57347 * 0.03636 * 8 7 6 26 26 N 1.34600 * 106.87772 * 0.06271 * 25 8 7 27 27 C 1.46576 * 127.71877 * 179.97438 * 26 25 8 28 28 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47591 * 299.97688 * 1 2 3 30 30 H 1.08996 * 109.47024 * 59.98080 * 1 2 3 31 31 H 1.09002 * 109.50629 * 309.74380 * 4 2 1 32 32 H 1.08997 * 109.51003 * 69.87427 * 4 2 1 33 33 H 1.09005 * 109.71879 * 70.72556 * 5 4 2 34 34 H 1.09000 * 109.71941 * 191.37715 * 5 4 2 35 35 H 1.08998 * 109.47111 * 84.09286 * 12 11 9 36 36 H 1.08995 * 109.47387 * 204.09932 * 12 11 9 37 37 H 1.09003 * 109.47033 * 324.09736 * 12 11 9 38 38 H 1.09003 * 109.46807 * 210.00184 * 13 11 9 39 39 H 1.08998 * 109.47139 * 329.99695 * 13 11 9 40 40 H 1.08995 * 109.46835 * 299.99996 * 14 13 11 41 41 H 1.09004 * 109.46929 * 60.00094 * 14 13 11 42 42 H 1.09004 * 109.47084 * 299.99628 * 15 14 13 43 43 H 1.08998 * 109.47288 * 59.99804 * 15 14 13 44 44 H 0.97002 * 120.00020 * 359.97438 * 16 15 14 45 45 H 0.96996 * 120.00272 * 179.97438 * 20 19 17 46 46 H 1.08008 * 126.60485 * 180.02562 * 25 8 7 47 47 H 1.09000 * 109.57916 * 77.31748 * 27 26 25 48 48 H 1.08999 * 109.58973 * 317.03914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7213 1.2508 5 6 3.5539 -0.5084 1.3757 6 6 4.1859 -0.8202 0.0390 7 7 5.4420 -1.0408 -0.2022 8 6 5.5978 -1.2848 -1.5300 9 6 6.8665 -1.5822 -2.2172 10 8 6.8623 -1.8995 -3.3913 11 7 8.0320 -1.5028 -1.5448 12 6 8.0318 -1.1932 -0.1128 13 6 9.2988 -1.7259 -2.2458 14 6 9.8195 -0.3958 -2.7942 15 6 11.1422 -0.6291 -3.5268 16 7 11.6410 0.6446 -4.0514 17 6 12.8192 0.6837 -4.7483 18 1 13.3804 -0.2245 -4.9116 19 6 13.2916 1.8904 -5.2458 20 7 12.6074 2.9972 -5.0472 21 14 14.8983 1.9437 -6.1971 22 1 15.4688 0.5753 -6.2819 23 1 14.6459 2.4601 -7.5663 24 1 15.8571 2.8378 -5.4996 25 6 4.3648 -1.2039 -2.1116 26 7 3.4889 -0.9127 -1.1320 27 6 2.0405 -0.7226 -1.2515 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8901 30 1 -0.3633 0.5141 -0.8898 31 1 1.5418 -0.3177 2.1323 32 1 1.8279 -1.7873 1.1683 33 1 3.7585 0.5274 1.6466 34 1 3.9575 -1.1751 2.1377 35 1 7.8697 -2.1083 0.4567 36 1 8.9915 -0.7575 0.1649 37 1 7.2338 -0.4834 0.1054 38 1 10.0288 -2.1439 -1.5526 39 1 9.1404 -2.4216 -3.0698 40 1 9.0894 0.0220 -3.4873 41 1 9.9778 0.2998 -1.9701 42 1 11.8725 -1.0472 -2.8340 43 1 10.9834 -1.3246 -4.3509 44 1 11.1368 1.4602 -3.9050 45 1 12.9376 3.8405 -5.3945 46 1 4.1356 -1.3457 -3.1575 47 1 1.5508 -1.6924 -1.3390 48 1 1.8223 -0.1221 -2.1346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754380740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:31 Heat of formation + Delta-G solvation = 31.819423 kcal Electronic energy + Delta-G solvation = -26450.847176 eV Core-core repulsion = 22734.862612 eV Total energy + Delta-G solvation = -3715.984565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.70760 -39.44297 -37.65700 -35.94659 -34.68219 -33.80003 -32.34605 -31.76978 -29.74062 -29.03347 -27.17613 -26.58222 -25.31128 -24.33231 -23.18553 -22.14110 -21.66053 -20.72819 -19.56651 -19.10627 -17.47159 -16.94440 -16.54963 -16.30553 -15.89645 -15.40436 -15.05192 -14.78418 -14.54841 -14.40627 -14.16172 -14.09979 -13.78772 -13.39884 -13.24601 -13.03172 -12.91855 -12.73188 -12.66215 -12.34758 -12.09742 -11.79885 -11.72235 -11.65693 -11.47564 -11.36414 -10.82136 -10.78846 -10.62335 -10.25651 -10.20775 -9.97695 -9.96960 -9.71294 -9.58989 -8.77540 -8.70861 -8.30808 -6.80849 -5.66677 -2.94787 1.48263 2.21523 2.27920 3.23665 3.50117 3.55130 3.57936 3.58592 3.72175 3.87007 3.96698 4.04855 4.49831 4.59214 4.68460 4.71903 4.76921 4.79831 4.81795 4.90467 5.08396 5.23672 5.24991 5.30426 5.37779 5.43802 5.45510 5.49982 5.55473 5.60220 5.66738 5.82305 5.83765 5.88948 6.02218 6.12201 6.27040 6.38198 6.45157 6.54176 6.69643 6.87600 7.01760 7.03658 7.52707 7.68979 7.79805 8.40275 8.52523 9.63090 10.23093 10.57856 11.56663 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.002035 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.762215 B =13753.576547 C =14034.631212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.121 4.121 5 C -0.033 4.033 6 C 0.203 3.797 7 N -0.451 5.451 8 C -0.057 4.057 9 C 0.599 3.401 10 O -0.544 6.544 11 N -0.601 5.601 12 C 0.078 3.922 13 C 0.119 3.881 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.235 4.235 18 H 0.071 0.929 19 C -0.018 4.018 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.038 3.962 26 N -0.454 5.454 27 C 0.105 3.895 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.188 0.812 47 H 0.088 0.912 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.729 -8.882 17.178 35.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.104 0.896 4 C -0.159 4.159 5 C -0.072 4.072 6 C -0.060 4.060 7 N -0.171 5.171 8 C -0.186 4.186 9 C 0.386 3.614 10 O -0.422 6.422 11 N -0.332 5.332 12 C -0.065 4.065 13 C -0.004 4.004 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.366 4.366 18 H 0.089 0.911 19 C -0.214 4.214 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.101 4.101 26 N -0.135 5.135 27 C -0.017 4.017 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.063 0.937 46 H 0.205 0.795 47 H 0.106 0.894 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.040 -9.109 17.026 34.873 hybrid contribution 0.149 0.442 -1.147 1.238 sum -28.890 -8.667 15.878 34.087 Atomic orbital electron populations 1.21768 0.93028 1.02615 1.02864 1.21488 0.97102 1.00464 0.93525 0.89640 1.21776 0.94704 1.01393 0.98054 1.20236 0.93714 1.03574 0.89666 1.23734 0.87345 1.05499 0.89445 1.70549 1.14682 1.17487 1.14366 1.20613 0.93832 1.13729 0.90410 1.16941 0.82042 0.77101 0.85267 1.90803 1.86833 1.48983 1.15544 1.47660 1.05766 1.69308 1.10479 1.22143 1.03350 1.01748 0.79282 1.21505 0.83416 0.98249 0.97197 1.22055 0.98487 0.96783 1.00377 1.20552 0.91590 0.90132 0.94913 1.42377 1.25520 1.04368 1.65501 1.19319 0.97784 0.93678 1.25853 0.91070 1.24762 0.99196 0.95562 1.01876 1.69683 1.39474 0.98076 1.51187 0.86089 0.83306 0.77237 0.79440 1.20546 1.21933 1.21939 1.22360 0.88844 1.03632 0.95309 1.45294 1.08514 1.51731 1.08002 1.22176 0.76775 1.02297 1.00445 0.92071 0.91442 0.91986 0.89718 0.91027 0.89011 0.88391 0.93174 0.91951 0.88060 0.90516 0.89782 0.91691 0.91991 0.96367 0.96165 0.78334 0.93662 0.79520 0.89372 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.27 9.17 37.16 0.34 0.08 16 2 C -0.11 -0.35 2.73 -90.42 -0.25 -0.60 16 3 H 0.09 0.34 8.11 -51.93 -0.42 -0.08 16 4 C -0.12 -0.40 5.25 -26.46 -0.14 -0.54 16 5 C -0.03 -0.18 6.33 -27.49 -0.17 -0.35 16 6 C 0.20 1.94 7.65 -154.38 -1.18 0.76 16 7 N -0.45 -5.65 7.78 -6.94 -0.05 -5.71 16 8 C -0.06 -0.81 6.66 -82.98 -0.55 -1.36 16 9 C 0.60 10.13 7.66 -12.57 -0.10 10.03 16 10 O -0.54 -10.74 16.45 5.26 0.09 -10.66 16 11 N -0.60 -9.37 2.87 -182.89 -0.53 -9.90 16 12 C 0.08 0.99 9.60 59.85 0.57 1.57 16 13 C 0.12 1.92 5.41 -4.04 -0.02 1.89 16 14 C -0.14 -2.63 5.65 -26.73 -0.15 -2.78 16 15 C 0.16 3.48 6.26 -4.04 -0.03 3.45 16 16 N -0.73 -20.29 5.60 -59.91 -0.34 -20.63 16 17 C -0.23 -7.02 9.99 -15.06 -0.15 -7.17 16 18 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 20 N -0.93 -29.77 13.06 55.49 0.72 -29.04 16 21 Si 0.91 23.43 29.55 -169.99 -5.02 18.40 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 C 0.04 0.43 11.32 -16.94 -0.19 0.24 16 26 N -0.45 -3.96 3.11 -113.41 -0.35 -4.31 16 27 C 0.10 0.49 6.25 -3.87 -0.02 0.47 16 28 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 29 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.15 8.12 -51.93 -0.42 -0.27 16 32 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 37 H 0.10 1.34 5.30 -51.93 -0.28 1.06 16 38 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 39 H 0.08 1.44 7.38 -51.93 -0.38 1.05 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.38 11.13 7.67 -40.82 -0.31 10.82 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.40 16 46 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 47 H 0.09 0.32 8.13 -51.93 -0.42 -0.10 16 48 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -37.27 387.86 -9.88 -47.16 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.11 Total: 3.81 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.13 Total: 5.03 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.54 Total: -69.59 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.27 -9.88 -47.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754380740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.975 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds