Wall clock time and date at job start Tue Mar 31 2020 12:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46063 * 2 1 4 4 C 1.53136 * 109.45393 * 119.97117 * 2 1 3 5 5 C 1.53388 * 109.25576 * 189.81311 * 4 2 1 6 6 C 1.51103 * 108.19125 * 311.05160 * 5 4 2 7 7 N 1.29793 * 127.17737 * 195.96091 * 6 5 4 8 8 C 1.35892 * 108.85371 * 179.90500 * 7 6 5 9 9 C 1.47318 * 126.21340 * 180.02562 * 8 7 6 10 10 O 1.21625 * 120.00181 * 173.50390 * 9 8 7 11 11 N 1.34783 * 120.00194 * 353.50598 * 9 8 7 12 12 C 1.46504 * 119.99785 * 3.38308 * 11 9 8 13 13 C 1.46497 * 120.00248 * 183.38271 * 11 9 8 14 14 C 1.53001 * 109.47174 * 89.99948 * 13 11 9 15 15 C 1.52998 * 109.46933 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.46988 * 180.02562 * 15 14 13 17 17 C 1.36940 * 120.00024 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99986 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99928 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99903 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47210 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46877 * 120.00479 * 21 19 17 24 24 H 1.48503 * 109.47205 * 240.00404 * 21 19 17 25 25 C 1.36573 * 107.57347 * 0.03636 * 8 7 6 26 26 N 1.34600 * 106.87772 * 0.06271 * 25 8 7 27 27 C 1.46576 * 127.71877 * 179.97438 * 26 25 8 28 28 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47591 * 299.97688 * 1 2 3 30 30 H 1.08996 * 109.47024 * 59.98080 * 1 2 3 31 31 H 1.09002 * 109.50629 * 309.74380 * 4 2 1 32 32 H 1.08997 * 109.51003 * 69.87427 * 4 2 1 33 33 H 1.09005 * 109.71879 * 70.72556 * 5 4 2 34 34 H 1.09000 * 109.71941 * 191.37715 * 5 4 2 35 35 H 1.08998 * 109.47111 * 84.09286 * 12 11 9 36 36 H 1.08995 * 109.47387 * 204.09932 * 12 11 9 37 37 H 1.09003 * 109.47033 * 324.09736 * 12 11 9 38 38 H 1.09003 * 109.46807 * 210.00184 * 13 11 9 39 39 H 1.08998 * 109.47139 * 329.99695 * 13 11 9 40 40 H 1.08995 * 109.46835 * 299.99996 * 14 13 11 41 41 H 1.09004 * 109.46929 * 60.00094 * 14 13 11 42 42 H 1.09004 * 109.47084 * 299.99628 * 15 14 13 43 43 H 1.08998 * 109.47288 * 59.99804 * 15 14 13 44 44 H 0.97002 * 120.00020 * 359.97438 * 16 15 14 45 45 H 0.96996 * 120.00272 * 179.97438 * 20 19 17 46 46 H 1.08008 * 126.60485 * 180.02562 * 25 8 7 47 47 H 1.09000 * 109.57916 * 77.31748 * 27 26 25 48 48 H 1.08999 * 109.58973 * 317.03914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7213 1.2508 5 6 3.5539 -0.5084 1.3757 6 6 4.1859 -0.8202 0.0390 7 7 5.4420 -1.0408 -0.2022 8 6 5.5978 -1.2848 -1.5300 9 6 6.8665 -1.5822 -2.2172 10 8 6.8623 -1.8995 -3.3913 11 7 8.0320 -1.5028 -1.5448 12 6 8.0318 -1.1932 -0.1128 13 6 9.2988 -1.7259 -2.2458 14 6 9.8195 -0.3958 -2.7942 15 6 11.1422 -0.6291 -3.5268 16 7 11.6410 0.6446 -4.0514 17 6 12.8192 0.6837 -4.7483 18 1 13.3804 -0.2245 -4.9116 19 6 13.2916 1.8904 -5.2458 20 7 12.6074 2.9972 -5.0472 21 14 14.8983 1.9437 -6.1971 22 1 15.4688 0.5753 -6.2819 23 1 14.6459 2.4601 -7.5663 24 1 15.8571 2.8378 -5.4996 25 6 4.3648 -1.2039 -2.1116 26 7 3.4889 -0.9127 -1.1320 27 6 2.0405 -0.7226 -1.2515 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8901 30 1 -0.3633 0.5141 -0.8898 31 1 1.5418 -0.3177 2.1323 32 1 1.8279 -1.7873 1.1683 33 1 3.7585 0.5274 1.6466 34 1 3.9575 -1.1751 2.1377 35 1 7.8697 -2.1083 0.4567 36 1 8.9915 -0.7575 0.1649 37 1 7.2338 -0.4834 0.1054 38 1 10.0288 -2.1439 -1.5526 39 1 9.1404 -2.4216 -3.0698 40 1 9.0894 0.0220 -3.4873 41 1 9.9778 0.2998 -1.9701 42 1 11.8725 -1.0472 -2.8340 43 1 10.9834 -1.3246 -4.3509 44 1 11.1368 1.4602 -3.9050 45 1 12.9376 3.8405 -5.3945 46 1 4.1356 -1.3457 -3.1575 47 1 1.5508 -1.6924 -1.3390 48 1 1.8223 -0.1221 -2.1346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754380740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:30 Heat of formation + Delta-G solvation = 8.511921 kcal Electronic energy + Delta-G solvation = -26451.857865 eV Core-core repulsion = 22734.862612 eV Total energy + Delta-G solvation = -3716.995254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.48255 -40.66119 -38.12749 -37.51302 -36.40105 -34.54031 -33.99369 -32.59112 -31.49834 -29.80457 -28.05224 -27.67389 -26.67342 -25.09212 -24.62463 -23.23576 -22.54791 -22.18095 -20.20226 -20.07828 -19.16534 -18.37029 -17.46713 -17.18179 -17.02820 -16.52251 -16.31168 -15.95944 -15.52684 -15.40873 -15.29042 -15.16385 -14.88056 -14.68559 -14.43237 -14.05967 -13.95698 -13.59211 -13.44714 -13.32393 -13.13066 -13.10031 -12.79378 -12.75409 -12.42463 -12.40907 -12.04221 -12.00378 -11.84639 -11.81749 -11.76986 -11.65309 -11.30867 -10.97190 -10.84116 -10.64831 -9.78511 -9.38741 -9.04322 -7.97277 -5.27753 0.51991 1.34775 1.45732 1.48128 1.58534 1.60651 2.08866 2.45396 2.55266 3.11196 3.35885 3.41467 3.58123 3.69829 3.80969 3.85908 4.00699 4.08160 4.24574 4.25720 4.36386 4.38842 4.44680 4.47421 4.53962 4.57130 4.59827 4.70199 4.72587 4.78130 4.89764 4.90375 4.94666 5.00557 5.07448 5.11475 5.16688 5.26666 5.28936 5.31284 5.41177 5.46231 5.47044 5.64730 6.05387 6.24663 6.38603 6.77864 7.17253 7.29725 8.04437 8.28813 9.27037 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.002035 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.762215 B =13753.576547 C =14034.631212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.033 4.033 6 C 0.207 3.793 7 N -0.474 5.474 8 C -0.095 4.095 9 C 0.590 3.410 10 O -0.586 6.586 11 N -0.603 5.603 12 C 0.081 3.919 13 C 0.127 3.873 14 C -0.120 4.120 15 C 0.156 3.844 16 N -0.749 5.749 17 C -0.248 4.248 18 H 0.079 0.921 19 C -0.082 4.082 20 N -0.973 5.973 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.042 3.958 26 N -0.447 5.447 27 C 0.095 3.905 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.017 0.983 44 H 0.371 0.629 45 H 0.252 0.748 46 H 0.196 0.804 47 H 0.103 0.897 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.916 -9.466 18.771 37.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.072 4.072 6 C -0.058 4.058 7 N -0.194 5.194 8 C -0.223 4.223 9 C 0.379 3.621 10 O -0.468 6.468 11 N -0.333 5.333 12 C -0.061 4.061 13 C 0.004 3.996 14 C -0.159 4.159 15 C 0.029 3.971 16 N -0.392 5.392 17 C -0.380 4.380 18 H 0.097 0.903 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.810 3.190 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.216 1.216 25 C -0.100 4.100 26 N -0.127 5.127 27 C -0.025 4.025 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.203 0.797 45 H 0.061 0.939 46 H 0.213 0.787 47 H 0.122 0.878 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -30.250 -9.728 18.667 36.854 hybrid contribution 0.394 0.609 -1.582 1.741 sum -29.856 -9.119 17.085 35.587 Atomic orbital electron populations 1.21737 0.91581 1.03140 1.03338 1.21481 0.98101 0.99808 0.92716 0.90237 1.21786 0.93011 1.01632 0.98921 1.20471 0.95040 1.04220 0.87456 1.24541 0.86800 1.03429 0.90992 1.70454 1.16571 1.18842 1.13528 1.20402 0.93473 1.16780 0.91621 1.17433 0.83267 0.76364 0.85000 1.90756 1.87603 1.51088 1.17309 1.47768 1.05202 1.68849 1.11482 1.22229 1.03862 1.02342 0.77634 1.21374 0.84463 0.96119 0.97688 1.21849 0.96173 0.98432 0.99409 1.20694 0.93249 0.87972 0.95168 1.42623 1.25162 1.05649 1.65763 1.19753 0.98465 0.94078 1.25678 0.90292 1.25708 1.03081 0.95206 1.03349 1.69852 1.41409 0.98579 1.52537 0.84953 0.78759 0.77870 0.77440 1.18801 1.21984 1.21621 1.22515 0.88701 1.02596 0.96180 1.45546 1.09852 1.50284 1.07056 1.22578 0.74312 1.03668 1.01902 0.91508 0.90692 0.91851 0.87524 0.90921 0.88110 0.87631 0.92007 0.90845 0.88339 0.87562 0.91001 0.94473 0.91754 0.94679 0.96465 0.79720 0.93917 0.78680 0.87840 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.12 9.17 71.98 0.66 0.54 16 2 C -0.10 -0.42 2.73 -10.66 -0.03 -0.44 16 3 H 0.08 0.45 8.11 -2.39 -0.02 0.44 16 4 C -0.12 -0.42 5.25 30.77 0.16 -0.26 16 5 C -0.03 -0.29 6.33 30.11 0.19 -0.10 16 6 C 0.21 3.73 7.65 137.96 1.06 4.78 16 7 N -0.47 -11.79 7.78 -175.88 -1.37 -13.16 16 8 C -0.10 -2.77 6.66 40.52 0.27 -2.50 16 9 C 0.59 20.74 7.66 86.63 0.66 21.40 16 10 O -0.59 -24.40 16.45 -4.11 -0.07 -24.47 16 11 N -0.60 -19.03 2.87 -850.77 -2.44 -21.47 16 12 C 0.08 2.03 9.60 127.77 1.23 3.26 16 13 C 0.13 4.08 5.41 86.38 0.47 4.55 16 14 C -0.12 -4.63 5.65 30.59 0.17 -4.46 16 15 C 0.16 6.98 6.26 86.38 0.54 7.52 16 16 N -0.75 -42.09 5.60 -343.45 -1.92 -44.02 16 17 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 18 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 19 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 20 N -0.97 -62.89 13.06 21.65 0.28 -62.61 16 21 Si 0.98 48.28 29.55 68.60 2.03 50.31 16 22 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 C 0.04 0.96 11.32 83.88 0.95 1.91 16 26 N -0.45 -7.34 3.11 -512.71 -1.60 -8.94 16 27 C 0.10 0.71 6.25 86.45 0.54 1.25 16 28 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.11 -0.01 8.12 -2.39 -0.02 -0.03 16 32 H 0.07 0.29 8.12 -2.39 -0.02 0.27 16 33 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.10 2.58 5.30 -2.39 -0.01 2.57 16 38 H 0.11 2.79 8.07 -2.39 -0.02 2.77 16 39 H 0.07 2.51 7.38 -2.39 -0.02 2.49 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.37 22.22 7.67 -92.71 -0.71 21.51 16 45 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.20 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.10 0.50 8.13 -2.39 -0.02 0.48 16 48 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -82.02 387.86 3.32 -78.70 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.23 Total: 26.73 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 8.18 Total: 18.93 kcal Atomic # 7 Polarization: -143.14 SS G_CDS: -7.05 Total: -150.19 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.07 Total: -24.47 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -82.02 3.32 -78.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754380740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.216 kcal (2) G-P(sol) polarization free energy of solvation -82.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds