Wall clock time and date at job start Tue Mar 31 2020 12:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.34944 * 126.03871 * 125.25877 * 3 2 1 5 5 C 1.35316 * 107.74613 * 180.15430 * 4 3 2 6 6 C 1.50702 * 126.04070 * 179.87552 * 5 4 3 7 7 C 1.50694 * 109.47143 * 269.70870 * 6 5 4 8 8 O 1.21275 * 119.99961 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99872 * 179.97438 * 7 6 5 10 10 C 1.47018 * 125.64981 * 0.02817 * 9 7 6 11 11 C 1.54325 * 107.40412 * 178.82520 * 10 9 7 12 12 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 13 13 N 1.46501 * 110.72113 * 96.24493 * 11 10 9 14 14 C 1.36931 * 119.99967 * 86.45843 * 13 11 10 15 15 H 1.08005 * 120.00140 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00234 * 180.02562 * 14 13 11 17 17 N 1.31623 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47011 * 89.99460 * 18 16 14 20 20 H 1.48494 * 109.46903 * 209.99409 * 18 16 14 21 21 H 1.48500 * 109.46628 * 329.99268 * 18 16 14 22 22 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 23 23 C 1.53000 * 110.89394 * 277.26684 * 22 11 10 24 24 C 1.52998 * 111.06990 * 153.48436 * 22 11 10 25 25 C 1.47426 * 125.64500 * 179.97438 * 9 7 6 26 26 C 1.39868 * 107.92151 * 359.60353 * 5 4 3 27 27 N 1.30843 * 108.20139 * 0.25113 * 26 5 4 28 28 H 1.08995 * 109.47162 * 300.00353 * 1 2 3 29 29 H 1.09000 * 109.46675 * 60.00103 * 1 2 3 30 30 H 1.09001 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47254 * 239.99940 * 2 1 3 32 32 H 1.08996 * 109.47365 * 119.99689 * 2 1 3 33 33 H 1.07998 * 126.12744 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.46955 * 149.70412 * 6 5 4 35 35 H 1.09007 * 109.46827 * 29.71092 * 6 5 4 36 36 H 1.09002 * 109.88241 * 298.32048 * 10 9 7 37 37 H 1.09000 * 109.88049 * 59.33177 * 10 9 7 38 38 H 0.97002 * 119.99754 * 266.45742 * 13 11 10 39 39 H 0.96993 * 120.00092 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.47124 * 173.68399 * 23 22 11 41 41 H 1.09000 * 109.46711 * 293.68751 * 23 22 11 42 42 H 1.08996 * 109.47179 * 53.68650 * 23 22 11 43 43 H 1.08997 * 109.47394 * 306.20721 * 24 22 11 44 44 H 1.08994 * 109.47153 * 66.21219 * 24 22 11 45 45 H 1.09004 * 109.47185 * 186.21200 * 24 22 11 46 46 H 1.08999 * 110.36956 * 323.01018 * 25 9 7 47 47 H 1.09001 * 110.36709 * 85.22211 * 25 9 7 48 48 H 1.07995 * 125.90164 * 180.26812 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9198 0.8910 5 6 3.0714 3.2137 0.5462 6 6 3.9548 4.2000 1.2660 7 6 3.1520 4.9169 2.3207 8 8 1.9782 4.6526 2.4733 9 7 3.7386 5.8510 3.0951 10 6 5.1466 6.2670 3.0179 11 6 5.3586 7.3758 4.0702 12 1 6.0102 8.1580 3.6804 13 7 5.9023 6.8165 5.3103 14 6 7.2550 6.6613 5.4560 15 1 7.9211 6.9509 4.6566 16 6 7.7702 6.1309 6.6308 17 7 6.9585 5.7775 7.6048 18 14 9.6156 5.9198 6.8299 19 1 10.1932 7.1515 7.4250 20 1 9.8882 4.7642 7.7218 21 1 10.2320 5.6758 5.5011 22 6 3.9194 7.9166 4.2963 23 6 3.5434 8.9349 3.2181 24 6 3.7726 8.5223 5.6936 25 6 3.0744 6.6255 4.1593 26 6 2.3126 3.4725 -0.5999 27 7 1.6808 2.3747 -0.9282 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3259 1.4102 1.7307 34 1 4.3467 4.9248 0.5525 35 1 4.7826 3.6699 1.7372 36 1 5.7961 5.4194 3.2366 37 1 5.3647 6.6540 2.0226 38 1 5.3041 6.5562 6.0281 39 1 7.3185 5.4072 8.4258 40 1 2.4960 9.2144 3.3317 41 1 4.1693 9.8213 3.3215 42 1 3.6971 8.4945 2.2330 43 1 4.0866 7.7932 6.4405 44 1 4.3960 9.4131 5.7708 45 1 2.7305 8.7922 5.8650 46 1 2.0525 6.8698 3.8692 47 1 3.0790 6.0662 5.0948 48 1 2.2578 4.4153 -1.1236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996501751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:48 Heat of formation + Delta-G solvation = 53.867779 kcal Electronic energy + Delta-G solvation = -27393.733529 eV Core-core repulsion = 23678.705053 eV Total energy + Delta-G solvation = -3715.028476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23810 -39.81308 -37.78344 -34.70486 -33.90092 -33.17800 -31.78845 -30.76172 -30.22341 -27.91107 -27.53119 -26.66529 -25.36150 -23.91212 -23.71297 -21.58327 -20.77831 -20.37600 -18.91001 -18.50608 -17.24984 -16.96886 -16.50933 -15.74234 -15.50337 -15.04543 -14.70934 -14.33134 -14.16467 -14.03857 -13.82672 -13.75902 -13.21328 -13.01996 -12.87201 -12.59227 -12.42742 -12.35036 -12.31356 -11.99565 -11.82473 -11.76441 -11.60493 -11.56626 -11.38147 -10.99625 -10.91843 -10.55992 -10.53136 -10.39567 -10.24962 -9.84035 -9.67246 -9.49606 -9.38683 -9.00596 -8.32669 -8.13040 -7.06933 -5.85126 -3.14923 1.91255 2.46903 2.77880 3.05473 3.38251 3.43782 3.45545 3.57111 4.31524 4.50873 4.70815 4.77469 4.80788 4.91994 4.98053 5.12075 5.13122 5.24646 5.29745 5.30806 5.45403 5.46676 5.50422 5.63147 5.70922 5.74596 5.77746 5.79306 5.91104 5.93491 6.01101 6.13865 6.15336 6.23061 6.24683 6.31284 6.37733 6.43297 6.60384 6.66404 6.74261 6.80699 6.95224 7.01170 7.62605 7.71429 8.01429 8.32888 8.60506 9.44741 10.00116 10.34731 11.36997 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003105 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.292198 B = 9015.415210 C =10209.710246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.375 5.375 4 C 0.067 3.933 5 C -0.214 4.214 6 C -0.056 4.056 7 C 0.525 3.475 8 O -0.549 6.549 9 N -0.607 5.607 10 C 0.072 3.928 11 C 0.179 3.821 12 H 0.069 0.931 13 N -0.713 5.713 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C -0.089 4.089 23 C -0.129 4.129 24 C -0.127 4.127 25 C 0.122 3.878 26 C 0.062 3.938 27 N -0.300 5.300 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 -4.518 -13.965 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.157 5.157 4 C -0.079 4.079 5 C -0.225 4.225 6 C -0.097 4.097 7 C 0.314 3.686 8 O -0.427 6.427 9 N -0.341 5.341 10 C -0.054 4.054 11 C 0.066 3.934 12 H 0.087 0.913 13 N -0.354 5.354 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.091 4.091 23 C -0.187 4.187 24 C -0.185 4.185 25 C -0.001 4.001 26 C -0.125 4.125 27 N -0.121 5.121 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.188 0.812 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.830 -5.465 -14.737 18.539 hybrid contribution 1.538 0.054 1.100 1.891 sum -8.293 -5.411 -13.637 16.853 Atomic orbital electron populations 1.22050 0.93884 1.02624 1.03747 1.21636 0.96080 0.77658 1.03498 1.48544 1.35531 1.10094 1.21576 1.22271 0.95127 0.94839 0.95625 1.19450 1.08103 0.94244 1.00752 1.19853 0.96910 0.96794 0.96131 1.20312 0.87521 0.78983 0.81833 1.90662 1.16660 1.64867 1.70545 1.48442 1.12067 1.38396 1.35152 1.23235 0.81200 1.00922 1.00052 1.21252 0.91766 0.92470 0.87866 0.91279 1.42476 1.04839 1.74363 1.13697 1.19215 0.83196 1.35297 0.99847 0.91013 1.24744 0.97665 1.01574 0.96563 1.69655 1.33346 1.48385 1.06316 0.86208 0.85290 0.77297 0.77464 1.21699 1.21847 1.20707 1.22041 0.96524 0.93988 0.96506 1.21676 1.00811 0.98198 0.97967 1.21601 1.00113 1.01501 0.95310 1.22209 0.96051 0.91149 0.90663 1.23671 0.95312 0.97213 0.96262 1.77239 1.23653 0.97091 1.14119 0.91919 0.91170 0.90874 0.90032 0.88773 0.81226 0.88495 0.88452 0.90555 0.92796 0.77726 0.93405 0.92939 0.92407 0.92814 0.90904 0.92313 0.93669 0.91461 0.91562 0.80436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.10 37.16 0.38 -0.97 16 2 C 0.13 1.10 7.23 -4.04 -0.03 1.07 16 3 N -0.37 -4.62 3.68 -61.36 -0.23 -4.85 16 4 C 0.07 0.85 11.36 -17.22 -0.20 0.66 16 5 C -0.21 -2.89 4.59 -105.05 -0.48 -3.37 16 6 C -0.06 -0.72 5.38 -29.04 -0.16 -0.88 16 7 C 0.53 8.72 7.84 -10.99 -0.09 8.63 16 8 O -0.55 -11.00 16.29 5.56 0.09 -10.91 16 9 N -0.61 -9.98 3.31 -170.52 -0.57 -10.54 16 10 C 0.07 1.16 5.83 -3.07 -0.02 1.14 16 11 C 0.18 3.18 2.88 -65.96 -0.19 2.99 16 12 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 13 N -0.71 -16.14 4.60 -51.52 -0.24 -16.38 16 14 C -0.24 -6.23 9.98 -15.06 -0.15 -6.38 16 15 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 18 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.09 -1.37 0.83 -152.23 -0.13 -1.50 16 23 C -0.13 -1.67 8.60 37.16 0.32 -1.35 16 24 C -0.13 -2.01 8.35 37.16 0.31 -1.70 16 25 C 0.12 2.03 5.82 -2.53 -0.01 2.02 16 26 C 0.06 0.83 11.96 -17.36 -0.21 0.62 16 27 N -0.30 -4.25 12.42 30.62 0.38 -3.87 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.57 8.07 -51.93 -0.42 0.16 16 33 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.39 9.50 6.02 -40.82 -0.25 9.25 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 43 H 0.07 1.35 6.18 -51.93 -0.32 1.03 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 47 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 48 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -32.52 392.45 -7.79 -40.31 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.10 Total: 9.36 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.75 Total: 0.65 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.08 Total: -61.60 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.52 -7.79 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996501751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.179 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds