Wall clock time and date at job start Tue Mar 31 2020 12:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.34944 * 126.03871 * 125.25877 * 3 2 1 5 5 C 1.35316 * 107.74613 * 180.15430 * 4 3 2 6 6 C 1.50702 * 126.04070 * 179.87552 * 5 4 3 7 7 C 1.50694 * 109.47143 * 269.70870 * 6 5 4 8 8 O 1.21275 * 119.99961 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99872 * 179.97438 * 7 6 5 10 10 C 1.47018 * 125.64981 * 0.02817 * 9 7 6 11 11 C 1.54325 * 107.40412 * 178.82520 * 10 9 7 12 12 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 13 13 N 1.46501 * 110.72113 * 96.24493 * 11 10 9 14 14 C 1.36931 * 119.99967 * 86.45843 * 13 11 10 15 15 H 1.08005 * 120.00140 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00234 * 180.02562 * 14 13 11 17 17 N 1.31623 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47011 * 89.99460 * 18 16 14 20 20 H 1.48494 * 109.46903 * 209.99409 * 18 16 14 21 21 H 1.48500 * 109.46628 * 329.99268 * 18 16 14 22 22 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 23 23 C 1.53000 * 110.89394 * 277.26684 * 22 11 10 24 24 C 1.52998 * 111.06990 * 153.48436 * 22 11 10 25 25 C 1.47426 * 125.64500 * 179.97438 * 9 7 6 26 26 C 1.39868 * 107.92151 * 359.60353 * 5 4 3 27 27 N 1.30843 * 108.20139 * 0.25113 * 26 5 4 28 28 H 1.08995 * 109.47162 * 300.00353 * 1 2 3 29 29 H 1.09000 * 109.46675 * 60.00103 * 1 2 3 30 30 H 1.09001 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47254 * 239.99940 * 2 1 3 32 32 H 1.08996 * 109.47365 * 119.99689 * 2 1 3 33 33 H 1.07998 * 126.12744 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.46955 * 149.70412 * 6 5 4 35 35 H 1.09007 * 109.46827 * 29.71092 * 6 5 4 36 36 H 1.09002 * 109.88241 * 298.32048 * 10 9 7 37 37 H 1.09000 * 109.88049 * 59.33177 * 10 9 7 38 38 H 0.97002 * 119.99754 * 266.45742 * 13 11 10 39 39 H 0.96993 * 120.00092 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.47124 * 173.68399 * 23 22 11 41 41 H 1.09000 * 109.46711 * 293.68751 * 23 22 11 42 42 H 1.08996 * 109.47179 * 53.68650 * 23 22 11 43 43 H 1.08997 * 109.47394 * 306.20721 * 24 22 11 44 44 H 1.08994 * 109.47153 * 66.21219 * 24 22 11 45 45 H 1.09004 * 109.47185 * 186.21200 * 24 22 11 46 46 H 1.08999 * 110.36956 * 323.01018 * 25 9 7 47 47 H 1.09001 * 110.36709 * 85.22211 * 25 9 7 48 48 H 1.07995 * 125.90164 * 180.26812 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9198 0.8910 5 6 3.0714 3.2137 0.5462 6 6 3.9548 4.2000 1.2660 7 6 3.1520 4.9169 2.3207 8 8 1.9782 4.6526 2.4733 9 7 3.7386 5.8510 3.0951 10 6 5.1466 6.2670 3.0179 11 6 5.3586 7.3758 4.0702 12 1 6.0102 8.1580 3.6804 13 7 5.9023 6.8165 5.3103 14 6 7.2550 6.6613 5.4560 15 1 7.9211 6.9509 4.6566 16 6 7.7702 6.1309 6.6308 17 7 6.9585 5.7775 7.6048 18 14 9.6156 5.9198 6.8299 19 1 10.1932 7.1515 7.4250 20 1 9.8882 4.7642 7.7218 21 1 10.2320 5.6758 5.5011 22 6 3.9194 7.9166 4.2963 23 6 3.5434 8.9349 3.2181 24 6 3.7726 8.5223 5.6936 25 6 3.0744 6.6255 4.1593 26 6 2.3126 3.4725 -0.5999 27 7 1.6808 2.3747 -0.9282 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3259 1.4102 1.7307 34 1 4.3467 4.9248 0.5525 35 1 4.7826 3.6699 1.7372 36 1 5.7961 5.4194 3.2366 37 1 5.3647 6.6540 2.0226 38 1 5.3041 6.5562 6.0281 39 1 7.3185 5.4072 8.4258 40 1 2.4960 9.2144 3.3317 41 1 4.1693 9.8213 3.3215 42 1 3.6971 8.4945 2.2330 43 1 4.0866 7.7932 6.4405 44 1 4.3960 9.4131 5.7708 45 1 2.7305 8.7922 5.8650 46 1 2.0525 6.8698 3.8692 47 1 3.0790 6.0662 5.0948 48 1 2.2578 4.4153 -1.1236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996501751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:47 Heat of formation + Delta-G solvation = 33.999512 kcal Electronic energy + Delta-G solvation = -27394.595082 eV Core-core repulsion = 23678.705053 eV Total energy + Delta-G solvation = -3715.890029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19292 -41.13694 -39.15002 -35.67075 -35.49001 -34.54270 -32.82640 -32.53659 -31.08107 -29.37117 -28.61715 -27.97080 -26.54510 -25.56772 -24.62909 -23.03184 -21.69338 -21.37539 -20.27631 -19.75331 -19.05040 -17.94457 -17.73135 -17.16400 -16.52120 -16.36256 -16.04682 -15.74864 -15.44453 -15.25690 -15.03419 -14.78005 -14.48920 -14.20078 -14.09964 -13.82630 -13.68123 -13.33939 -13.23111 -13.16870 -12.99858 -12.97980 -12.79677 -12.75661 -12.68945 -12.53723 -12.30160 -12.11517 -12.02560 -11.77403 -11.46611 -11.38885 -11.23693 -10.94545 -10.78533 -10.33085 -9.50748 -9.30020 -8.95227 -7.87876 -5.15663 0.96537 1.53093 1.53451 1.61409 1.64808 1.74349 1.78097 2.33407 2.61295 3.44176 3.48761 3.56978 3.86781 3.93428 3.96752 4.01468 4.07659 4.10586 4.15661 4.28477 4.33319 4.39553 4.45555 4.53383 4.66766 4.71518 4.72737 4.75788 4.81516 4.85401 4.91500 4.96194 4.99521 5.08453 5.13377 5.15676 5.19036 5.20388 5.36062 5.41250 5.45681 5.59150 5.65106 5.73248 6.15752 6.33468 6.71295 6.75833 7.30117 7.41056 8.16036 8.38638 9.35521 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003105 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.292198 B = 9015.415210 C =10209.710246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 N -0.376 5.376 4 C 0.061 3.939 5 C -0.234 4.234 6 C -0.045 4.045 7 C 0.522 3.478 8 O -0.588 6.588 9 N -0.607 5.607 10 C 0.082 3.918 11 C 0.168 3.832 12 H 0.080 0.920 13 N -0.724 5.724 14 C -0.230 4.230 15 H 0.084 0.916 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.966 3.034 19 H -0.292 1.292 20 H -0.304 1.304 21 H -0.266 1.266 22 C -0.077 4.077 23 C -0.122 4.122 24 C -0.123 4.123 25 C 0.122 3.878 26 C 0.051 3.949 27 N -0.328 5.328 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.190 0.810 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.374 0.626 39 H 0.247 0.753 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.038 0.962 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 -4.205 -16.059 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.159 5.159 4 C -0.086 4.086 5 C -0.245 4.245 6 C -0.086 4.086 7 C 0.312 3.688 8 O -0.469 6.469 9 N -0.340 5.340 10 C -0.043 4.043 11 C 0.058 3.942 12 H 0.098 0.902 13 N -0.364 5.364 14 C -0.362 4.362 15 H 0.102 0.898 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.797 3.203 19 H -0.219 1.219 20 H -0.232 1.232 21 H -0.190 1.190 22 C -0.078 4.078 23 C -0.180 4.180 24 C -0.181 4.181 25 C -0.001 4.001 26 C -0.134 4.134 27 N -0.150 5.150 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.207 0.793 34 H 0.141 0.859 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.208 0.792 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.195 -5.133 -16.904 19.915 hybrid contribution 1.245 -0.053 1.710 2.116 sum -7.950 -5.185 -15.194 17.915 Atomic orbital electron populations 1.22007 0.93900 1.03940 1.01868 1.22023 0.96104 0.76178 1.05507 1.48900 1.35073 1.10988 1.20919 1.22705 0.94903 0.95076 0.95958 1.19635 1.08931 0.94809 1.01175 1.19848 0.96327 0.97009 0.95389 1.21006 0.87307 0.78418 0.82020 1.90644 1.18551 1.65912 1.71757 1.48525 1.12137 1.38457 1.34876 1.23047 0.80557 0.99513 1.01183 1.21526 0.93124 0.93101 0.86420 0.90244 1.42650 1.03914 1.74639 1.15188 1.19636 0.84631 1.32528 0.99376 0.89829 1.25467 1.01278 1.03023 0.96906 1.69819 1.34815 1.50750 1.06754 0.85237 0.81128 0.76381 0.77596 1.21908 1.23173 1.19034 1.21989 0.94529 0.94023 0.97269 1.21634 1.01800 0.97615 0.96911 1.21535 1.01347 1.00451 0.94738 1.22141 0.96637 0.91582 0.89750 1.24040 0.95062 0.97803 0.96524 1.77177 1.24534 0.97896 1.15343 0.93801 0.92901 0.87974 0.88503 0.86281 0.79286 0.85887 0.87448 0.92346 0.89027 0.79219 0.94385 0.91791 0.91141 0.92121 0.94289 0.92166 0.91604 0.91229 0.94357 0.78757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.10 71.98 0.73 -1.71 16 2 C 0.12 1.82 7.23 86.38 0.62 2.45 16 3 N -0.38 -8.87 3.68 -348.05 -1.28 -10.16 16 4 C 0.06 1.45 11.36 83.54 0.95 2.40 16 5 C -0.23 -5.99 4.59 -20.14 -0.09 -6.09 16 6 C -0.05 -1.07 5.38 29.10 0.16 -0.92 16 7 C 0.52 16.69 7.84 87.66 0.69 17.38 16 8 O -0.59 -23.38 16.29 -3.01 -0.05 -23.42 16 9 N -0.61 -19.14 3.31 -811.81 -2.69 -21.83 16 10 C 0.08 2.46 5.83 86.73 0.51 2.97 16 11 C 0.17 5.71 2.88 46.27 0.13 5.84 16 12 H 0.08 2.57 8.03 -2.39 -0.02 2.55 16 13 N -0.72 -32.75 4.60 -316.91 -1.46 -34.20 16 14 C -0.23 -11.57 9.98 84.03 0.84 -10.73 16 15 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 17 N -0.97 -57.26 13.06 21.65 0.28 -56.98 16 18 Si 0.97 43.95 29.55 68.60 2.03 45.98 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 C -0.08 -2.25 0.83 -50.70 -0.04 -2.29 16 23 C -0.12 -2.76 8.60 71.98 0.62 -2.14 16 24 C -0.12 -3.81 8.35 71.98 0.60 -3.21 16 25 C 0.12 4.01 5.82 86.85 0.51 4.52 16 26 C 0.05 1.32 11.96 85.23 1.02 2.34 16 27 N -0.33 -9.08 12.42 -57.02 -0.71 -9.78 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.06 1.99 8.04 -2.39 -0.02 1.97 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.37 18.88 6.02 -92.71 -0.56 18.33 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.31 7.81 -2.39 -0.02 1.29 16 43 H 0.04 1.48 6.18 -2.39 -0.01 1.46 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.25 7.95 -2.39 -0.02 2.23 16 47 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 48 H 0.20 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -71.80 392.45 4.20 -67.60 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.38 Total: 35.56 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 7.70 Total: 7.23 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -5.85 Total: -132.95 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.80 4.20 -67.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996501751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.596 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds