Wall clock time and date at job start Tue Mar 31 2020 12:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50693 * 120.00009 * 2 1 4 4 N 1.46497 * 109.47260 * 126.26076 * 3 2 1 5 5 C 1.36743 * 127.13530 * 87.12015 * 4 3 2 6 6 C 1.50700 * 126.34936 * 0.23517 * 5 4 3 7 7 C 1.52999 * 109.46958 * 272.64617 * 6 5 4 8 8 H 1.09005 * 109.47255 * 59.49957 * 7 6 5 9 9 O 1.42901 * 109.46980 * 299.50395 * 7 6 5 10 10 C 1.52993 * 109.47439 * 179.50460 * 7 6 5 11 11 C 1.53005 * 117.50337 * 248.62040 * 10 7 6 12 12 C 1.52998 * 60.00038 * 252.51035 * 11 10 7 13 13 N 1.30292 * 107.30544 * 180.26435 * 5 4 3 14 14 N 1.28534 * 110.05496 * 0.02562 * 13 5 4 15 15 C 1.31216 * 109.85609 * 359.97438 * 14 13 5 16 16 N 1.38577 * 126.47107 * 179.97438 * 15 14 13 17 17 C 1.46892 * 111.00295 * 296.30309 * 16 15 14 18 18 C 1.46905 * 111.00088 * 60.25645 * 16 15 14 19 19 H 1.09007 * 109.46914 * 300.00178 * 18 16 15 20 20 C 1.53002 * 109.46971 * 59.99942 * 18 16 15 21 21 C 1.50697 * 109.47514 * 179.97438 * 18 16 15 22 22 H 1.08005 * 119.99854 * 359.97438 * 21 18 16 23 23 C 1.37875 * 120.00535 * 179.97438 * 21 18 16 24 24 N 1.31516 * 119.99568 * 0.02562 * 23 21 18 25 25 Si 1.86794 * 120.00383 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.46819 * 60.00590 * 25 23 21 27 27 H 1.48504 * 109.47038 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47197 * 300.00574 * 25 23 21 29 29 H 1.07995 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99652 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.99652 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47567 * 6.25696 * 3 2 1 33 33 H 1.09012 * 109.47070 * 246.25940 * 3 2 1 34 34 H 1.09003 * 109.47280 * 32.63861 * 6 5 4 35 35 H 1.08996 * 109.47331 * 152.64568 * 6 5 4 36 36 H 0.96699 * 114.00457 * 303.42507 * 9 7 6 37 37 H 1.09008 * 115.54941 * 34.32846 * 10 7 6 38 38 H 1.09002 * 117.49454 * 0.02562 * 11 10 7 39 39 H 1.08997 * 117.50131 * 145.01772 * 11 10 7 40 40 H 1.09004 * 117.49321 * 252.50762 * 12 11 10 41 41 H 1.08997 * 117.50244 * 107.48874 * 12 11 10 42 42 H 1.09003 * 109.47322 * 65.36426 * 17 16 15 43 43 H 1.09000 * 109.47924 * 185.36688 * 17 16 15 44 44 H 1.09008 * 109.47364 * 305.36414 * 17 16 15 45 45 H 1.08994 * 109.47152 * 60.00020 * 20 18 16 46 46 H 1.08999 * 109.46688 * 180.02562 * 20 18 16 47 47 H 1.09004 * 109.46801 * 299.99982 * 20 18 16 48 48 H 0.97000 * 119.99819 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0152 1.3195 1.1137 5 6 4.2953 0.8386 1.1120 6 6 5.0045 0.1906 -0.0491 7 6 4.7063 -1.3100 -0.0557 8 1 3.6311 -1.4665 -0.1440 9 8 5.1741 -1.8939 1.1618 10 6 5.4162 -1.9659 -1.2416 11 6 4.5440 -2.5034 -2.3780 12 6 5.2409 -3.4750 -1.4234 13 7 4.7880 1.0439 2.3006 14 7 3.9128 1.6169 3.0476 15 6 2.8060 1.8099 2.3697 16 7 1.6438 2.3996 2.8408 17 6 1.0505 1.6030 3.9229 18 6 1.8938 3.7793 3.2790 19 1 2.6341 3.7780 4.0790 20 6 2.4182 4.6017 2.1002 21 6 0.6100 4.3868 3.7829 22 1 -0.3007 3.8061 3.7777 23 6 0.5979 5.6837 4.2505 24 7 1.7067 6.3910 4.2563 25 14 -0.9935 6.4369 4.8744 26 1 -1.5039 5.6386 6.0179 27 1 -0.7408 7.8316 5.3175 28 1 -2.0011 6.4394 3.7835 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3607 2.1305 0.1120 33 1 2.6036 1.4128 -0.9408 34 1 4.6555 0.6344 -0.9815 35 1 6.0788 0.3472 0.0481 36 1 6.1146 -1.7475 1.3324 37 1 6.3818 -1.5357 -1.5080 38 1 3.4644 -2.3892 -2.2809 39 1 4.9355 -2.4267 -3.3924 40 1 6.0908 -4.0375 -1.8098 41 1 4.6197 -4.0004 -0.6981 42 1 1.7202 1.6023 4.7829 43 1 0.0919 2.0358 4.2093 44 1 0.8988 0.5795 3.5796 45 1 1.6780 4.6030 1.3002 46 1 2.6041 5.6253 2.4255 47 1 3.3468 4.1625 1.7353 48 1 1.6982 7.3036 4.5849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341989141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:08 Heat of formation + Delta-G solvation = 87.083506 kcal Electronic energy + Delta-G solvation = -28275.481328 eV Core-core repulsion = 24561.893193 eV Total energy + Delta-G solvation = -3713.588134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.45740 -38.85217 -36.97649 -35.96933 -35.66317 -32.99188 -32.67838 -31.72229 -29.37077 -28.29309 -26.69386 -25.54014 -24.49352 -24.15417 -22.65729 -21.72443 -21.25501 -20.83692 -19.68002 -19.43941 -16.98438 -16.73064 -16.34071 -16.23427 -15.77808 -15.43879 -15.16562 -14.82569 -14.49043 -14.34692 -13.78293 -13.74408 -13.35541 -13.06664 -12.98749 -12.45870 -12.28246 -12.16269 -11.86301 -11.81013 -11.56450 -11.18940 -11.12503 -11.08207 -10.91037 -10.82013 -10.79214 -10.53908 -10.34715 -10.28446 -10.19378 -10.08586 -9.94538 -9.70562 -9.57822 -9.08445 -8.51729 -8.31967 -7.67981 -6.07199 -4.13846 1.94682 2.27174 2.90011 3.28911 3.33903 3.35155 3.36343 3.43982 4.11172 4.32516 4.34025 4.51922 4.62139 4.64050 4.67982 4.74497 4.77197 4.87444 5.05822 5.11963 5.12965 5.25156 5.32663 5.41904 5.55772 5.59787 5.64502 5.73903 5.79990 5.83496 5.88947 6.04992 6.23498 6.39262 6.44333 6.45123 6.63364 6.65273 6.74616 6.90876 6.96391 7.19061 7.41110 7.57991 7.67073 7.75977 7.93140 8.18974 8.48415 8.89720 9.33555 9.50956 10.99774 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.003314 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.646334 B = 8447.465564 C = 8923.652393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.183 4.183 3 C 0.141 3.859 4 N -0.465 5.465 5 C 0.161 3.839 6 C -0.055 4.055 7 C 0.142 3.858 8 H 0.096 0.904 9 O -0.547 6.547 10 C -0.193 4.193 11 C -0.175 4.175 12 C -0.165 4.165 13 N -0.282 5.282 14 N -0.321 5.321 15 C 0.387 3.613 16 N -0.472 5.472 17 C 0.053 3.947 18 C 0.225 3.775 19 H 0.021 0.979 20 C -0.129 4.129 21 C -0.511 4.511 22 H 0.066 0.934 23 C 0.063 3.937 24 N -0.889 5.889 25 Si 0.901 3.099 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.378 0.622 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.031 0.969 46 H 0.092 0.908 47 H 0.001 0.999 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 -15.779 -14.915 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.202 4.202 3 C 0.018 3.982 4 N -0.159 5.159 5 C -0.107 4.107 6 C -0.095 4.095 7 C 0.082 3.918 8 H 0.113 0.887 9 O -0.352 6.352 10 C -0.211 4.211 11 C -0.212 4.212 12 C -0.202 4.202 13 N -0.122 5.122 14 N -0.164 5.164 15 C 0.031 3.969 16 N -0.200 5.200 17 C -0.095 4.095 18 C 0.121 3.879 19 H 0.038 0.962 20 C -0.188 4.188 21 C -0.550 4.550 22 H 0.084 0.916 23 C -0.140 4.140 24 N -0.527 5.527 25 Si 0.729 3.271 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.225 0.775 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.110 0.890 47 H 0.020 0.980 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.495 -15.701 -14.031 21.345 hybrid contribution -0.654 0.725 -0.338 1.033 sum 2.841 -14.977 -14.369 20.948 Atomic orbital electron populations 1.23971 0.95574 1.02580 0.96892 1.23055 0.96435 0.97585 1.03088 1.20839 0.91713 0.97887 0.87713 1.46316 1.12105 1.45696 1.11747 1.24151 0.83874 1.04380 0.98246 1.20631 1.00826 0.94971 0.93085 1.21451 0.98244 0.89207 0.82894 0.88671 1.86627 1.30567 1.78108 1.39883 1.23082 1.01628 0.97592 0.98845 1.22963 0.98888 1.04244 0.95073 1.22841 1.03207 0.91680 1.02446 1.73894 1.24347 1.14430 0.99530 1.74692 0.98930 1.17609 1.25150 1.22780 0.93835 0.97398 0.82867 1.59218 1.18139 1.05143 1.37455 1.22163 1.00638 0.95018 0.91636 1.19407 0.97037 0.78459 0.93015 0.96158 1.21802 0.95767 1.03491 0.97711 1.21015 0.94281 0.97988 1.41706 0.91619 1.24915 0.96536 0.96920 0.95599 1.69892 1.26371 1.10106 1.46298 0.86516 0.83244 0.78172 0.79213 1.20160 1.21284 1.20221 0.88071 0.87530 0.87376 0.87231 0.89033 0.89332 0.88247 0.77483 0.87337 0.88649 0.88611 0.88778 0.88386 0.94724 0.89343 0.93879 0.95024 0.88992 0.98012 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 14.32 29.01 0.42 -1.19 16 2 C -0.18 -2.10 9.85 -36.03 -0.35 -2.45 16 3 C 0.14 1.86 6.43 -5.20 -0.03 1.83 16 4 N -0.47 -7.97 2.79 -115.37 -0.32 -8.30 16 5 C 0.16 2.64 6.98 -154.01 -1.08 1.57 16 6 C -0.06 -0.59 5.24 -27.88 -0.15 -0.74 16 7 C 0.14 1.40 3.20 -26.73 -0.09 1.32 16 8 H 0.10 1.01 5.88 -51.93 -0.31 0.71 16 9 O -0.55 -6.59 12.89 -35.23 -0.45 -7.04 16 10 C -0.19 -1.43 5.38 -90.62 -0.49 -1.92 16 11 C -0.17 -1.16 10.18 -26.73 -0.27 -1.43 16 12 C -0.16 -1.20 10.16 -26.73 -0.27 -1.47 16 13 N -0.28 -5.77 12.18 32.99 0.40 -5.37 16 14 N -0.32 -7.47 12.15 30.31 0.37 -7.11 16 15 C 0.39 8.24 5.03 -318.89 -1.60 6.64 16 16 N -0.47 -10.45 4.66 -176.08 -0.82 -11.27 16 17 C 0.05 1.09 9.15 60.06 0.55 1.64 16 18 C 0.23 5.79 2.00 -68.86 -0.14 5.66 16 19 H 0.02 0.61 8.10 -51.93 -0.42 0.19 16 20 C -0.13 -3.25 8.84 37.16 0.33 -2.92 16 21 C -0.51 -13.63 7.94 -34.44 -0.27 -13.90 16 22 H 0.07 1.70 6.40 -52.48 -0.34 1.36 16 23 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 24 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 25 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.11 1.15 7.85 -52.48 -0.41 0.74 16 31 H 0.11 1.19 6.04 -52.48 -0.32 0.87 16 32 H 0.11 1.59 7.80 -51.93 -0.40 1.19 16 33 H 0.09 0.94 7.39 -51.92 -0.38 0.55 16 34 H 0.09 0.78 7.41 -51.93 -0.38 0.39 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.38 3.51 9.04 45.56 0.41 3.93 16 37 H 0.11 0.70 8.11 -51.92 -0.42 0.28 16 38 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.78 6.29 -51.93 -0.33 1.46 16 44 H 0.04 0.79 8.11 -51.92 -0.42 0.37 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 47 H 0.00 0.02 7.22 -51.93 -0.38 -0.35 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 391.80 15.07 5.90 5.90 Total: -1.00 -32.82 391.80 -9.78 -42.60 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.92 Total: 5.17 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.54 Total: -5.79 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.26 Total: -56.67 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.45 Total: -7.04 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.82 -9.78 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341989141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.684 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds