Wall clock time and date at job start Tue Mar 31 2020 12:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50693 * 120.00009 * 2 1 4 4 N 1.46497 * 109.47260 * 126.26076 * 3 2 1 5 5 C 1.36743 * 127.13530 * 87.12015 * 4 3 2 6 6 C 1.50700 * 126.34936 * 0.23517 * 5 4 3 7 7 C 1.52999 * 109.46958 * 272.64617 * 6 5 4 8 8 H 1.09005 * 109.47255 * 59.49957 * 7 6 5 9 9 O 1.42901 * 109.46980 * 299.50395 * 7 6 5 10 10 C 1.52993 * 109.47439 * 179.50460 * 7 6 5 11 11 C 1.53005 * 117.50337 * 248.62040 * 10 7 6 12 12 C 1.52998 * 60.00038 * 252.51035 * 11 10 7 13 13 N 1.30292 * 107.30544 * 180.26435 * 5 4 3 14 14 N 1.28534 * 110.05496 * 0.02562 * 13 5 4 15 15 C 1.31216 * 109.85609 * 359.97438 * 14 13 5 16 16 N 1.38577 * 126.47107 * 179.97438 * 15 14 13 17 17 C 1.46892 * 111.00295 * 296.30309 * 16 15 14 18 18 C 1.46905 * 111.00088 * 60.25645 * 16 15 14 19 19 H 1.09007 * 109.46914 * 300.00178 * 18 16 15 20 20 C 1.53002 * 109.46971 * 59.99942 * 18 16 15 21 21 C 1.50697 * 109.47514 * 179.97438 * 18 16 15 22 22 H 1.08005 * 119.99854 * 359.97438 * 21 18 16 23 23 C 1.37875 * 120.00535 * 179.97438 * 21 18 16 24 24 N 1.31516 * 119.99568 * 0.02562 * 23 21 18 25 25 Si 1.86794 * 120.00383 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.46819 * 60.00590 * 25 23 21 27 27 H 1.48504 * 109.47038 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47197 * 300.00574 * 25 23 21 29 29 H 1.07995 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99652 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.99652 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47567 * 6.25696 * 3 2 1 33 33 H 1.09012 * 109.47070 * 246.25940 * 3 2 1 34 34 H 1.09003 * 109.47280 * 32.63861 * 6 5 4 35 35 H 1.08996 * 109.47331 * 152.64568 * 6 5 4 36 36 H 0.96699 * 114.00457 * 303.42507 * 9 7 6 37 37 H 1.09008 * 115.54941 * 34.32846 * 10 7 6 38 38 H 1.09002 * 117.49454 * 0.02562 * 11 10 7 39 39 H 1.08997 * 117.50131 * 145.01772 * 11 10 7 40 40 H 1.09004 * 117.49321 * 252.50762 * 12 11 10 41 41 H 1.08997 * 117.50244 * 107.48874 * 12 11 10 42 42 H 1.09003 * 109.47322 * 65.36426 * 17 16 15 43 43 H 1.09000 * 109.47924 * 185.36688 * 17 16 15 44 44 H 1.09008 * 109.47364 * 305.36414 * 17 16 15 45 45 H 1.08994 * 109.47152 * 60.00020 * 20 18 16 46 46 H 1.08999 * 109.46688 * 180.02562 * 20 18 16 47 47 H 1.09004 * 109.46801 * 299.99982 * 20 18 16 48 48 H 0.97000 * 119.99819 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0152 1.3195 1.1137 5 6 4.2953 0.8386 1.1120 6 6 5.0045 0.1906 -0.0491 7 6 4.7063 -1.3100 -0.0557 8 1 3.6311 -1.4665 -0.1440 9 8 5.1741 -1.8939 1.1618 10 6 5.4162 -1.9659 -1.2416 11 6 4.5440 -2.5034 -2.3780 12 6 5.2409 -3.4750 -1.4234 13 7 4.7880 1.0439 2.3006 14 7 3.9128 1.6169 3.0476 15 6 2.8060 1.8099 2.3697 16 7 1.6438 2.3996 2.8408 17 6 1.0505 1.6030 3.9229 18 6 1.8938 3.7793 3.2790 19 1 2.6341 3.7780 4.0790 20 6 2.4182 4.6017 2.1002 21 6 0.6100 4.3868 3.7829 22 1 -0.3007 3.8061 3.7777 23 6 0.5979 5.6837 4.2505 24 7 1.7067 6.3910 4.2563 25 14 -0.9935 6.4369 4.8744 26 1 -1.5039 5.6386 6.0179 27 1 -0.7408 7.8316 5.3175 28 1 -2.0011 6.4394 3.7835 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3607 2.1305 0.1120 33 1 2.6036 1.4128 -0.9408 34 1 4.6555 0.6344 -0.9815 35 1 6.0788 0.3472 0.0481 36 1 6.1146 -1.7475 1.3324 37 1 6.3818 -1.5357 -1.5080 38 1 3.4644 -2.3892 -2.2809 39 1 4.9355 -2.4267 -3.3924 40 1 6.0908 -4.0375 -1.8098 41 1 4.6197 -4.0004 -0.6981 42 1 1.7202 1.6023 4.7829 43 1 0.0919 2.0358 4.2093 44 1 0.8988 0.5795 3.5796 45 1 1.6780 4.6030 1.3002 46 1 2.6041 5.6253 2.4255 47 1 3.3468 4.1625 1.7353 48 1 1.6982 7.3036 4.5849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341989141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:07 Heat of formation + Delta-G solvation = 66.287215 kcal Electronic energy + Delta-G solvation = -28276.383122 eV Core-core repulsion = 24561.893193 eV Total energy + Delta-G solvation = -3714.489929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.92499 -39.60543 -38.74046 -37.09149 -36.40175 -34.94034 -33.80669 -32.90611 -31.33953 -29.66312 -27.89206 -27.37443 -26.13995 -25.29202 -23.52092 -23.16098 -22.16762 -21.76194 -21.13741 -20.68102 -18.54249 -18.07119 -17.61919 -17.46913 -17.06180 -16.50275 -16.45970 -16.11991 -15.89406 -15.38284 -15.26651 -15.01890 -14.56788 -14.43731 -14.19174 -13.79565 -13.68521 -13.40914 -13.05828 -13.03315 -12.85026 -12.69120 -12.52401 -12.48157 -12.34675 -12.23841 -12.19886 -12.08723 -11.95231 -11.53879 -11.40503 -11.12633 -11.10495 -11.02189 -10.87491 -10.57814 -10.49935 -9.83521 -9.53704 -8.14774 -6.29281 0.79532 1.02090 1.45341 1.47580 1.54995 1.68049 1.89131 2.42038 2.82068 3.04613 3.17386 3.25759 3.59691 3.67567 3.71719 3.88560 3.92315 3.98629 4.10457 4.16852 4.22936 4.33052 4.40937 4.50938 4.57783 4.62436 4.64888 4.72895 4.81474 4.83514 4.85339 4.88641 4.92413 4.99803 5.06203 5.09721 5.13629 5.30008 5.32576 5.36707 5.57220 5.60119 5.64397 5.70831 5.91698 5.98975 6.14490 6.64570 6.81233 6.84653 7.40014 7.82834 8.92368 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.003314 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.646334 B = 8447.465564 C = 8923.652393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.192 4.192 3 C 0.134 3.866 4 N -0.459 5.459 5 C 0.187 3.813 6 C -0.054 4.054 7 C 0.148 3.852 8 H 0.088 0.912 9 O -0.572 6.572 10 C -0.190 4.190 11 C -0.166 4.166 12 C -0.172 4.172 13 N -0.322 5.322 14 N -0.367 5.367 15 C 0.363 3.637 16 N -0.462 5.462 17 C 0.058 3.942 18 C 0.236 3.764 19 H -0.032 1.032 20 C -0.109 4.109 21 C -0.523 4.523 22 H 0.074 0.926 23 C 0.013 3.987 24 N -0.922 5.922 25 Si 0.969 3.031 26 H -0.270 1.270 27 H -0.288 1.288 28 H -0.265 1.265 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.387 0.613 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.011 0.989 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.066 0.934 47 H -0.002 1.002 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 -17.028 -17.518 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.211 4.211 3 C 0.013 3.987 4 N -0.152 5.152 5 C -0.082 4.082 6 C -0.094 4.094 7 C 0.088 3.912 8 H 0.106 0.894 9 O -0.380 6.380 10 C -0.208 4.208 11 C -0.202 4.202 12 C -0.209 4.209 13 N -0.162 5.162 14 N -0.210 5.210 15 C 0.006 3.994 16 N -0.188 5.188 17 C -0.089 4.089 18 C 0.130 3.870 19 H -0.015 1.015 20 C -0.168 4.168 21 C -0.561 4.561 22 H 0.092 0.908 23 C -0.186 4.186 24 N -0.561 5.561 25 Si 0.794 3.206 26 H -0.195 1.195 27 H -0.213 1.213 28 H -0.189 1.189 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.236 0.764 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.030 0.970 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.017 0.983 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.424 -16.980 -16.664 23.914 hybrid contribution -0.263 1.016 0.410 1.126 sum 2.161 -15.965 -16.253 22.885 Atomic orbital electron populations 1.24152 0.95369 1.03383 0.95165 1.22975 0.96654 0.96860 1.04569 1.21184 0.91464 0.98486 0.87586 1.46521 1.12886 1.44613 1.11157 1.25209 0.83243 1.01390 0.98349 1.20980 1.01159 0.95390 0.91834 1.21422 0.98188 0.88335 0.83251 0.89377 1.86596 1.31598 1.78518 1.41244 1.22952 1.02258 0.97485 0.98145 1.23061 0.98930 1.02824 0.95430 1.22865 1.03692 0.91663 1.02677 1.73803 1.24699 1.16378 1.01285 1.74557 1.00219 1.18894 1.27324 1.22662 0.93312 0.98977 0.84477 1.59147 1.18599 1.03806 1.37252 1.22144 0.99926 0.96099 0.90753 1.19075 0.95459 0.80844 0.91645 1.01474 1.21542 0.95839 1.01777 0.97625 1.21298 0.94687 0.98343 1.41750 0.90787 1.25790 0.99809 0.97391 0.95645 1.70049 1.28603 1.10348 1.47125 0.85435 0.79198 0.77014 0.78942 1.19475 1.21341 1.18927 0.86094 0.87927 0.86634 0.88696 0.85558 0.86298 0.86750 0.76404 0.85810 0.88519 0.87099 0.87707 0.89817 0.96971 0.89045 0.91627 0.93899 0.91482 0.98270 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 14.32 67.77 0.97 -1.68 16 2 C -0.19 -3.93 9.85 25.64 0.25 -3.68 16 3 C 0.13 3.25 6.43 85.63 0.55 3.80 16 4 N -0.46 -15.36 2.79 -518.93 -1.45 -16.80 16 5 C 0.19 5.94 6.98 137.64 0.96 6.90 16 6 C -0.05 -1.02 5.24 29.85 0.16 -0.86 16 7 C 0.15 2.57 3.20 30.59 0.10 2.67 16 8 H 0.09 1.66 5.88 -2.38 -0.01 1.65 16 9 O -0.57 -13.18 12.89 -148.98 -1.92 -15.10 16 10 C -0.19 -2.23 5.38 -10.79 -0.06 -2.29 16 11 C -0.17 -1.64 10.18 30.60 0.31 -1.33 16 12 C -0.17 -2.10 10.16 30.59 0.31 -1.79 16 13 N -0.32 -13.43 12.18 -49.54 -0.60 -14.03 16 14 N -0.37 -17.75 12.15 -58.01 -0.70 -18.45 16 15 C 0.36 15.75 5.03 260.12 1.31 17.05 16 16 N -0.46 -20.82 4.66 -711.00 -3.31 -24.13 16 17 C 0.06 2.44 9.15 127.69 1.17 3.61 16 18 C 0.24 12.55 2.00 44.17 0.09 12.64 16 19 H -0.03 -2.04 8.10 -2.38 -0.02 -2.06 16 20 C -0.11 -5.64 8.84 71.98 0.64 -5.01 16 21 C -0.52 -28.23 7.94 25.60 0.20 -28.02 16 22 H 0.07 3.80 6.40 -2.91 -0.02 3.78 16 23 C 0.01 0.70 5.30 84.65 0.45 1.15 16 24 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 25 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 28 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 29 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.10 2.00 7.85 -2.91 -0.02 1.98 16 31 H 0.12 2.23 6.04 -2.91 -0.02 2.21 16 32 H 0.09 2.62 7.80 -2.39 -0.02 2.61 16 33 H 0.13 2.14 7.39 -2.38 -0.02 2.12 16 34 H 0.12 1.57 7.41 -2.39 -0.02 1.55 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.39 6.87 9.04 -74.06 -0.67 6.20 16 37 H 0.12 1.12 8.11 -2.38 -0.02 1.10 16 38 H 0.10 0.95 8.05 -2.39 -0.02 0.93 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 3.70 6.29 -2.39 -0.02 3.69 16 44 H 0.06 2.40 8.11 -2.38 -0.02 2.39 16 45 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 47 H 0.00 -0.09 7.22 -2.38 -0.02 -0.11 16 48 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -74.41 391.80 1.98 -72.43 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.29 Total: 21.76 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 7.41 Total: 3.15 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -5.82 Total: -126.97 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.92 Total: -15.10 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.41 1.98 -72.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341989141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.716 kcal (2) G-P(sol) polarization free energy of solvation -74.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds