Wall clock time and date at job start Tue Mar 31 2020 12:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47310 * 2 1 4 4 C 1.36876 * 126.39904 * 265.18913 * 3 2 1 5 5 C 1.34674 * 106.81763 * 180.25408 * 4 3 2 6 6 N 1.34126 * 108.01807 * 359.74220 * 5 4 3 7 7 C 1.30497 * 109.25976 * 359.97438 * 6 5 4 8 8 C 1.50705 * 125.65437 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.46139 * 165.05413 * 8 7 6 10 10 C 1.53037 * 109.45937 * 285.03064 * 8 7 6 11 11 C 1.53123 * 109.27398 * 179.18166 * 10 8 7 12 12 C 1.53120 * 109.21163 * 302.31409 * 11 10 8 13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 10 14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11 15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12 16 16 C 1.50690 * 109.47377 * 65.79142 * 15 14 13 17 17 O 1.21282 * 119.99983 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00540 * 179.97438 * 16 15 14 19 19 C 1.46488 * 120.00249 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.47218 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99533 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00053 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00168 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99921 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47072 * 90.00218 * 24 22 20 26 26 H 1.48500 * 109.47609 * 210.00231 * 24 22 20 27 27 H 1.48504 * 109.47205 * 330.00763 * 24 22 20 28 28 H 1.08997 * 109.46765 * 59.99894 * 1 2 3 29 29 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46846 * 300.00026 * 1 2 3 31 31 H 1.09000 * 109.46846 * 239.99974 * 2 1 3 32 32 H 1.09001 * 109.47317 * 120.00562 * 2 1 3 33 33 H 1.08004 * 126.59658 * 0.02562 * 4 3 2 34 34 H 1.07998 * 125.98987 * 179.72681 * 5 4 3 35 35 H 1.08996 * 109.50616 * 59.24476 * 10 8 7 36 36 H 1.08992 * 109.50671 * 299.12112 * 10 8 7 37 37 H 1.09002 * 109.52319 * 62.25202 * 11 10 8 38 38 H 1.08995 * 109.52318 * 182.37884 * 11 10 8 39 39 H 1.09004 * 109.49930 * 177.63007 * 12 11 10 40 40 H 1.08997 * 109.50353 * 297.74224 * 12 11 10 41 41 H 1.09003 * 109.44926 * 180.83262 * 13 12 11 42 42 H 1.09002 * 109.44150 * 60.87652 * 13 12 11 43 43 H 1.09007 * 109.47226 * 185.79563 * 15 14 13 44 44 H 1.09007 * 109.47336 * 305.79107 * 15 14 13 45 45 H 0.96995 * 119.99260 * 0.02562 * 18 16 15 46 46 H 1.09003 * 109.47891 * 300.00115 * 19 18 16 47 47 H 1.09006 * 109.47201 * 60.00463 * 19 18 16 48 48 H 0.97004 * 120.00354 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3763 2.1162 -1.0978 5 6 2.7689 3.3231 -0.6476 6 7 2.6485 3.3269 0.6882 7 6 2.1957 2.1684 1.0829 8 6 1.9234 1.7719 2.5111 9 1 1.3140 0.8684 2.5272 10 6 3.2491 1.5056 3.2279 11 6 2.9685 1.1230 4.6838 12 6 2.1800 2.2494 5.3577 13 6 0.8848 2.4944 4.5778 14 7 1.2068 2.8579 3.1920 15 6 -0.0046 3.2346 2.4514 16 6 -0.5774 4.5000 3.0357 17 8 -0.0301 5.0357 3.9762 18 7 -1.6974 5.0372 2.5126 19 6 -2.2545 6.2671 3.0811 20 6 -3.4973 6.6537 2.3213 21 1 -3.8382 6.0439 1.4977 22 6 -4.1996 7.7852 2.6783 23 7 -3.7847 8.5274 3.6816 24 14 -5.7404 8.2639 1.7370 25 1 -6.9246 7.6305 2.3709 26 1 -5.8966 9.7405 1.7611 27 1 -5.6251 7.8012 0.3306 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3523 1.7896 -2.1271 34 1 3.1196 4.1440 -1.2556 35 1 3.8648 2.4046 3.2001 36 1 3.7735 0.6891 2.7317 37 1 2.3856 0.2025 4.7126 38 1 3.9116 0.9736 5.2093 39 1 1.9413 1.9638 6.3823 40 1 2.7790 3.1600 5.3634 41 1 0.3273 3.3058 5.0458 42 1 0.2803 1.5874 4.5843 43 1 0.2465 3.3994 1.4036 44 1 -0.7405 2.4340 2.5270 45 1 -2.1349 4.6090 1.7603 46 1 -2.5063 6.1018 4.1286 47 1 -1.5187 7.0678 3.0062 48 1 -4.2786 9.3237 3.9325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815106985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:10 Heat of formation + Delta-G solvation = 26.752923 kcal Electronic energy + Delta-G solvation = -28049.657627 eV Core-core repulsion = 24333.453362 eV Total energy + Delta-G solvation = -3716.204265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28873 -39.44220 -37.90706 -35.19935 -34.12393 -33.44271 -32.24251 -31.89170 -30.29576 -28.62985 -28.13145 -26.32775 -24.26995 -23.46664 -23.29676 -22.09229 -21.46648 -20.03463 -19.56250 -19.24447 -17.36456 -17.03985 -16.08902 -15.64537 -15.46786 -15.39498 -14.95138 -14.83573 -14.37856 -14.35356 -14.07916 -13.78556 -13.70645 -13.50817 -13.41995 -12.92261 -12.77801 -12.67339 -12.44262 -12.23355 -12.09345 -11.83076 -11.76786 -11.34749 -11.23984 -10.93394 -10.84735 -10.75705 -10.63367 -10.40036 -10.24640 -9.80114 -9.65577 -9.33828 -8.87552 -8.67454 -8.41119 -8.10952 -7.75356 -6.11637 -4.18163 1.92929 2.56194 3.17741 3.26674 3.32693 3.35378 3.50969 3.69983 4.16656 4.25506 4.31297 4.48940 4.54573 4.65909 4.77036 4.78195 4.87669 4.94398 5.13946 5.19663 5.20538 5.22613 5.24238 5.38592 5.41543 5.50451 5.58033 5.62632 5.66623 5.70303 5.76877 5.82945 5.89042 5.93945 6.14376 6.21961 6.32278 6.43869 6.73290 7.02126 7.07410 7.25308 7.40390 7.54900 7.60481 7.74319 8.03384 8.18817 8.72436 8.86035 9.23009 9.48646 10.98625 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.003433 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.745662 B = 8154.069595 C = 9309.837082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.458 5.458 4 C -0.062 4.062 5 C -0.028 4.028 6 N -0.455 5.455 7 C 0.209 3.791 8 C 0.178 3.822 9 H 0.047 0.953 10 C -0.104 4.104 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.052 3.948 14 N -0.495 5.495 15 C 0.040 3.960 16 C 0.504 3.496 17 O -0.535 6.535 18 N -0.716 5.716 19 C 0.252 3.748 20 C -0.542 4.542 21 H 0.061 0.939 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.387 0.613 46 H 0.025 0.975 47 H 0.027 0.973 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.250 -22.557 -6.857 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.142 5.142 4 C -0.194 4.194 5 C -0.177 4.177 6 N -0.173 5.173 7 C -0.053 4.053 8 C 0.067 3.933 9 H 0.065 0.935 10 C -0.143 4.143 11 C -0.157 4.157 12 C -0.153 4.153 13 C -0.075 4.075 14 N -0.220 5.220 15 C -0.092 4.092 16 C 0.288 3.712 17 O -0.413 6.413 18 N -0.365 5.365 19 C 0.132 3.868 20 C -0.580 4.580 21 H 0.080 0.920 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.189 0.811 34 H 0.186 0.814 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.041 0.959 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.219 0.781 46 H 0.043 0.957 47 H 0.045 0.955 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.040 -21.044 -5.536 25.368 hybrid contribution -1.884 -1.240 -1.765 2.864 sum 11.156 -22.284 -7.301 25.968 Atomic orbital electron populations 1.22193 0.93948 1.03267 1.03564 1.21838 0.95814 0.80362 1.04382 1.45523 1.49358 1.12465 1.06897 1.22651 1.09974 0.94371 0.92405 1.22422 1.06452 0.97234 0.91611 1.70391 1.16815 1.18758 1.11298 1.23002 1.04349 0.87722 0.90265 1.19837 0.96362 0.91988 0.85096 0.93540 1.21581 0.95443 1.02250 0.94992 1.21608 1.00427 0.98344 0.95326 1.21593 0.96521 0.99143 0.98038 1.22358 0.97206 1.00072 0.87914 1.61364 1.22208 1.36830 1.01577 1.21984 0.91340 0.96221 0.99608 1.20165 0.81081 0.85845 0.84152 1.90618 1.59799 1.62546 1.28288 1.46420 1.26086 1.28907 1.35117 1.19064 0.93114 0.80364 0.94306 1.21231 1.09721 1.10190 1.16876 0.92040 1.24942 0.97962 0.95938 0.95147 1.69976 1.39525 1.15653 1.27107 0.86436 0.82748 0.77770 0.80065 1.20526 1.20988 1.19790 0.91491 0.90445 0.91826 0.88927 0.89241 0.81112 0.81427 0.89712 0.92029 0.92521 0.91524 0.91507 0.90419 0.87744 0.95870 0.88455 0.93381 0.78093 0.95671 0.95514 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.10 0.63 6.33 -4.04 -0.03 0.60 16 3 N -0.46 -4.66 2.75 -113.90 -0.31 -4.98 16 4 C -0.06 -0.63 11.58 -16.56 -0.19 -0.82 16 5 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 6 N -0.46 -7.24 10.88 -10.81 -0.12 -7.35 16 7 C 0.21 2.75 4.95 -155.41 -0.77 1.98 16 8 C 0.18 2.19 2.13 -68.87 -0.15 2.04 16 9 H 0.05 0.49 7.10 -51.93 -0.37 0.12 16 10 C -0.10 -1.14 5.36 -26.65 -0.14 -1.28 16 11 C -0.12 -1.15 6.00 -26.61 -0.16 -1.31 16 12 C -0.12 -1.39 6.11 -26.58 -0.16 -1.55 16 13 C 0.05 0.75 5.11 -3.77 -0.02 0.73 16 14 N -0.49 -7.68 4.21 -229.43 -0.97 -8.65 16 15 C 0.04 0.65 5.24 -4.98 -0.03 0.63 16 16 C 0.50 10.75 7.50 -10.99 -0.08 10.67 16 17 O -0.53 -13.37 14.33 5.56 0.08 -13.29 16 18 N -0.72 -15.92 5.55 -61.48 -0.34 -16.27 16 19 C 0.25 6.92 5.43 -5.20 -0.03 6.89 16 20 C -0.54 -15.08 9.28 -34.44 -0.32 -15.40 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 22 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 24 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.50 8.03 -51.93 -0.42 0.09 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.48 7.58 -51.93 -0.39 0.09 16 33 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.87 5.78 -51.93 -0.30 1.57 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.10 1.64 6.30 -51.93 -0.33 1.31 16 44 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 45 H 0.39 7.49 8.32 -40.82 -0.34 7.15 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -35.19 385.38 -10.16 -45.35 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.02 Total: 5.44 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.00 Total: 3.60 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -1.00 Total: -63.09 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.19 -10.16 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815106985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.104 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds