Wall clock time and date at job start Tue Mar 31 2020 12:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47279 * 2 1 4 4 C 1.36890 * 126.39499 * 264.94685 * 3 2 1 5 5 C 1.34669 * 106.81617 * 180.02562 * 4 3 2 6 6 N 1.34134 * 108.02026 * 0.02562 * 5 4 3 7 7 C 1.30493 * 109.25480 * 0.02562 * 6 5 4 8 8 C 1.50702 * 125.64890 * 180.02562 * 7 6 5 9 9 H 1.08995 * 109.46639 * 194.96998 * 8 7 6 10 10 C 1.53045 * 109.46070 * 74.99563 * 8 7 6 11 11 C 1.53115 * 109.27698 * 180.80662 * 10 8 7 12 12 C 1.53115 * 109.16443 * 57.65275 * 11 10 8 13 13 C 1.53036 * 109.27805 * 302.34674 * 12 11 10 14 14 N 1.46840 * 109.46405 * 314.95504 * 8 7 6 15 15 C 1.46904 * 111.00175 * 305.85517 * 14 8 7 16 16 C 1.50700 * 109.47499 * 170.00029 * 15 14 8 17 17 O 1.21279 * 119.99972 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99780 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99883 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47374 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99715 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00434 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99541 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00393 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46866 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47382 * 119.99723 * 24 22 20 27 27 H 1.48494 * 109.46943 * 240.00056 * 24 22 20 28 28 H 1.09001 * 109.47161 * 300.00350 * 1 2 3 29 29 H 1.08996 * 109.47008 * 59.99787 * 1 2 3 30 30 H 1.08994 * 109.47168 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47406 * 240.00104 * 2 1 3 32 32 H 1.08993 * 109.47250 * 119.99752 * 2 1 3 33 33 H 1.07996 * 126.59258 * 0.08195 * 4 3 2 34 34 H 1.08002 * 125.99042 * 180.26007 * 5 4 3 35 35 H 1.08998 * 109.50221 * 300.74368 * 10 8 7 36 36 H 1.08999 * 109.50510 * 60.86425 * 10 8 7 37 37 H 1.08996 * 109.52440 * 177.56057 * 11 10 8 38 38 H 1.08998 * 109.52606 * 297.68421 * 11 10 8 39 39 H 1.09004 * 109.50392 * 62.28818 * 12 11 10 40 40 H 1.09002 * 109.51019 * 182.36308 * 12 11 10 41 41 H 1.09008 * 109.46350 * 179.18956 * 13 12 11 42 42 H 1.08998 * 109.46264 * 299.16978 * 13 12 11 43 43 H 1.09006 * 109.46398 * 290.00383 * 15 14 8 44 44 H 1.09000 * 109.47005 * 49.99725 * 15 14 8 45 45 H 0.97000 * 119.99920 * 0.02562 * 18 16 15 46 46 H 1.09011 * 109.46890 * 299.99871 * 19 18 16 47 47 H 1.09000 * 109.47158 * 60.00216 * 19 18 16 48 48 H 0.97002 * 119.99544 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3806 2.1146 -1.0976 5 6 2.7667 3.3239 -0.6480 6 7 2.6440 3.3286 0.6877 7 6 2.1972 2.1680 1.0829 8 6 1.9238 1.7720 2.5110 9 1 1.8180 0.6890 2.5737 10 6 0.6309 2.4388 2.9864 11 6 0.3679 2.0498 4.4438 12 6 1.5666 2.4679 5.2998 13 6 2.8322 1.8003 4.7573 14 7 3.0402 2.2047 3.3610 15 6 4.3195 1.6942 2.8502 16 6 5.4548 2.3510 3.5923 17 8 5.2213 3.1646 4.4608 18 7 6.7296 2.0341 3.2908 19 6 7.8333 2.6730 4.0117 20 6 9.1456 2.1492 3.4878 21 1 9.1564 1.4136 2.6972 22 6 10.3324 2.6090 4.0178 23 7 10.3193 3.5052 4.9802 24 14 11.9591 1.9591 3.3688 25 1 11.7023 0.9661 2.2950 26 1 12.7590 3.0844 2.8220 27 1 12.7089 1.3098 4.4739 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3599 1.7868 -2.1264 34 1 3.1108 4.1471 -1.2566 35 1 0.7310 3.5216 2.9112 36 1 -0.2003 2.1055 2.3651 37 1 -0.5287 2.5570 4.8001 38 1 0.2280 0.9711 4.5134 39 1 1.6813 3.5512 5.2610 40 1 1.4036 2.1561 6.3315 41 1 3.6899 2.1073 5.3559 42 1 2.7222 0.7171 4.8092 43 1 4.3649 0.6151 2.9978 44 1 4.4019 1.9192 1.7869 45 1 6.9163 1.3836 2.5959 46 1 7.7879 3.7520 3.8633 47 1 7.7508 2.4487 5.0752 48 1 11.1543 3.8289 5.3528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815106986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:14 Heat of formation + Delta-G solvation = 27.008945 kcal Electronic energy + Delta-G solvation = -27923.921938 eV Core-core repulsion = 24207.728775 eV Total energy + Delta-G solvation = -3716.193163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29011 -39.44491 -37.91025 -35.21725 -34.12169 -33.43681 -32.24172 -31.90245 -30.30622 -28.64151 -28.13997 -26.33285 -24.20903 -23.46743 -23.39705 -22.09045 -21.45903 -20.06787 -19.56100 -19.16842 -17.43932 -17.03899 -15.99610 -15.73839 -15.46766 -15.40176 -14.99730 -14.84878 -14.34385 -14.27290 -14.07973 -13.91718 -13.70266 -13.57193 -13.29126 -12.93010 -12.86343 -12.65141 -12.46602 -12.23817 -12.09289 -11.83968 -11.81205 -11.35397 -11.20661 -10.90597 -10.86794 -10.75877 -10.63267 -10.39692 -10.24956 -9.80504 -9.65453 -9.32092 -8.87497 -8.67845 -8.41613 -8.11102 -7.75260 -6.11809 -4.18199 1.93367 2.55307 3.17636 3.26162 3.32908 3.36095 3.51268 3.70479 4.15888 4.24311 4.31369 4.48050 4.51324 4.63476 4.75832 4.80763 4.87451 4.93964 5.11040 5.18140 5.18807 5.21959 5.24138 5.39368 5.41013 5.47894 5.55988 5.59226 5.65600 5.69309 5.76565 5.84420 5.89026 5.93809 6.15185 6.21681 6.32310 6.43864 6.73135 7.01963 7.07388 7.25216 7.40583 7.55103 7.60507 7.74561 8.03357 8.18700 8.72697 8.86236 9.23210 9.48674 10.98496 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.003260 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.263990 B = 8587.084488 C = 9779.102507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.458 5.458 4 C -0.062 4.062 5 C -0.028 4.028 6 N -0.455 5.455 7 C 0.209 3.791 8 C 0.178 3.822 9 H 0.046 0.954 10 C -0.103 4.103 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.052 3.948 14 N -0.495 5.495 15 C 0.039 3.961 16 C 0.504 3.496 17 O -0.535 6.535 18 N -0.716 5.716 19 C 0.252 3.748 20 C -0.541 4.541 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.023 0.977 43 H 0.049 0.951 44 H 0.097 0.903 45 H 0.387 0.613 46 H 0.027 0.973 47 H 0.025 0.975 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.178 -9.946 -10.112 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.142 5.142 4 C -0.194 4.194 5 C -0.177 4.177 6 N -0.173 5.173 7 C -0.053 4.053 8 C 0.068 3.932 9 H 0.064 0.936 10 C -0.142 4.142 11 C -0.157 4.157 12 C -0.153 4.153 13 C -0.075 4.075 14 N -0.221 5.221 15 C -0.092 4.092 16 C 0.288 3.712 17 O -0.413 6.413 18 N -0.365 5.365 19 C 0.131 3.869 20 C -0.579 4.579 21 H 0.080 0.920 22 C -0.141 4.141 23 N -0.523 5.523 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.189 0.811 34 H 0.186 0.814 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.115 0.885 45 H 0.219 0.781 46 H 0.045 0.955 47 H 0.043 0.957 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.039 -8.207 -8.851 26.009 hybrid contribution 0.942 -2.231 -1.509 2.853 sum -22.096 -10.438 -10.359 26.543 Atomic orbital electron populations 1.22179 0.94012 1.03155 1.03387 1.21836 0.95757 0.80422 1.04500 1.45519 1.49309 1.12432 1.06960 1.22650 1.09826 0.94468 0.92476 1.22423 1.06335 0.97334 0.91601 1.70397 1.16556 1.19154 1.11165 1.22994 1.04289 0.87759 0.90287 1.19829 0.92859 0.96208 0.84323 0.93618 1.21588 0.93981 1.02670 0.95940 1.21607 0.98674 1.00585 0.94847 1.21569 0.93247 1.02300 0.98182 1.22336 1.00431 0.96103 0.88663 1.61366 0.99165 1.59991 1.01540 1.21985 0.89700 0.96766 1.00779 1.20155 0.83873 0.83165 0.84021 1.90617 1.84137 1.33916 1.32583 1.46425 1.06109 1.44234 1.39780 1.19067 0.82105 0.93569 0.92115 1.21270 0.90554 1.25222 1.20897 0.91977 1.24951 0.99412 0.94858 0.94840 1.69992 1.27419 1.29273 1.25572 0.86375 0.83137 0.78741 0.78735 1.19700 1.20784 1.20843 0.91617 0.91761 0.90543 0.88882 0.89288 0.81115 0.81423 0.89737 0.92000 0.91524 0.92505 0.90419 0.91520 0.87736 0.95866 0.93328 0.88465 0.78073 0.95526 0.95660 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.10 0.62 6.53 -4.04 -0.03 0.60 16 3 N -0.46 -4.66 2.75 -113.91 -0.31 -4.98 16 4 C -0.06 -0.63 11.58 -16.56 -0.19 -0.82 16 5 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 6 N -0.46 -7.23 10.88 -10.82 -0.12 -7.35 16 7 C 0.21 2.75 4.95 -155.42 -0.77 1.98 16 8 C 0.18 2.19 2.21 -68.87 -0.15 2.04 16 9 H 0.05 0.48 6.85 -51.93 -0.36 0.13 16 10 C -0.10 -1.13 5.36 -26.65 -0.14 -1.27 16 11 C -0.12 -1.15 6.00 -26.61 -0.16 -1.31 16 12 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 13 C 0.05 0.75 5.11 -3.83 -0.02 0.73 16 14 N -0.50 -7.71 4.21 -229.51 -0.97 -8.68 16 15 C 0.04 0.64 5.24 -4.97 -0.03 0.62 16 16 C 0.50 10.77 7.50 -10.99 -0.08 10.69 16 17 O -0.53 -13.38 14.33 5.56 0.08 -13.30 16 18 N -0.72 -15.96 5.55 -61.47 -0.34 -16.30 16 19 C 0.25 6.92 5.43 -5.19 -0.03 6.89 16 20 C -0.54 -15.08 9.28 -34.44 -0.32 -15.40 16 21 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.88 -26.60 13.29 55.43 0.74 -25.86 16 24 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.06 0.40 7.30 -51.93 -0.38 0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.09 0.53 7.12 -51.93 -0.37 0.16 16 33 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.56 7.30 -51.93 -0.38 0.19 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.87 5.78 -51.92 -0.30 1.57 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.10 1.64 6.30 -51.93 -0.33 1.31 16 45 H 0.39 7.51 8.32 -40.82 -0.34 7.17 16 46 H 0.03 0.82 8.14 -51.92 -0.42 0.39 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -35.26 383.37 -10.08 -45.34 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.90 Total: 5.32 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.01 Total: 3.82 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -1.00 Total: -63.17 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.26 -10.08 -45.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815106986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.345 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds