Wall clock time and date at job start Tue Mar 31 2020 12:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46756 * 2 1 4 4 N 1.39931 * 125.75414 * 270.24297 * 3 2 1 5 5 C 1.30450 * 108.89953 * 180.15593 * 4 3 2 6 6 C 1.41286 * 108.02007 * 359.64529 * 5 4 3 7 7 C 1.47428 * 126.41441 * 180.24669 * 6 5 4 8 8 O 1.21602 * 120.00046 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99794 * 359.97438 * 7 6 5 10 10 C 1.46503 * 120.00201 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.45877 * 324.97975 * 10 9 7 12 12 C 1.53039 * 109.45658 * 84.93066 * 10 9 7 13 13 C 1.53200 * 109.31304 * 181.38957 * 12 10 9 14 14 N 1.46927 * 108.77366 * 305.36704 * 13 12 10 15 15 C 1.36933 * 120.62734 * 233.63211 * 14 13 12 16 16 H 1.08004 * 119.99653 * 150.14793 * 15 14 13 17 17 C 1.38813 * 120.00198 * 330.14046 * 15 14 13 18 18 N 1.31620 * 120.00001 * 344.50238 * 17 15 14 19 19 Si 1.86806 * 119.99950 * 164.50211 * 17 15 14 20 20 H 1.48497 * 109.46962 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47071 * 119.99995 * 19 17 15 22 22 H 1.48500 * 109.46780 * 240.00309 * 19 17 15 23 23 C 1.46928 * 118.73774 * 53.60786 * 14 13 12 24 24 H 1.08995 * 109.58663 * 66.18138 * 23 14 13 25 25 C 1.52999 * 109.58219 * 186.60445 * 23 14 13 26 26 C 1.53037 * 109.46594 * 205.00030 * 10 9 7 27 27 C 1.34257 * 125.75325 * 90.00242 * 3 2 1 28 28 C 1.50699 * 126.29739 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.46792 * 300.00279 * 1 2 3 30 30 H 1.09000 * 109.46867 * 60.00321 * 1 2 3 31 31 H 1.08997 * 109.46655 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47141 * 239.99845 * 2 1 3 33 33 H 1.09000 * 109.46867 * 119.99679 * 2 1 3 34 34 H 1.08005 * 125.98995 * 179.90833 * 5 4 3 35 35 H 0.96999 * 120.00017 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.50326 * 301.34020 * 12 10 9 37 37 H 1.09006 * 109.50044 * 61.43869 * 12 10 9 38 38 H 1.09002 * 109.58559 * 185.58126 * 13 12 10 39 39 H 1.09000 * 109.58583 * 65.15658 * 13 12 10 40 40 H 0.96998 * 119.99789 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46940 * 179.28848 * 25 23 14 42 42 H 1.08996 * 109.47497 * 299.28954 * 25 23 14 43 43 H 1.09001 * 109.47684 * 59.29134 * 25 23 14 44 44 H 1.08998 * 109.49739 * 298.57001 * 26 10 9 45 45 H 1.08997 * 109.49480 * 58.63224 * 26 10 9 46 46 H 1.08995 * 109.47186 * 270.00598 * 28 27 3 47 47 H 1.09012 * 109.46700 * 30.00220 * 28 27 3 48 48 H 1.08999 * 109.47417 * 149.99841 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2863 2.1538 -1.1356 5 6 2.7070 3.3292 -0.7574 6 6 2.7166 3.3563 0.6552 7 6 3.1175 4.4916 1.5060 8 8 3.0800 4.3869 2.7170 9 7 3.5255 5.6455 0.9417 10 6 3.9234 6.7739 1.7871 11 1 3.3037 6.7922 2.6836 12 6 5.3926 6.6184 2.1865 13 6 5.7955 7.7815 3.0986 14 7 5.4858 9.0459 2.4172 15 6 6.4492 10.0056 2.2561 16 1 6.4135 10.6688 1.4044 17 6 7.4714 10.1263 3.1874 18 7 7.3618 9.5461 4.3638 19 14 9.0026 11.1121 2.7712 20 1 8.8801 11.6598 1.3964 21 1 9.1495 12.2299 3.7376 22 1 10.1951 10.2305 2.8489 23 6 4.1231 9.2607 1.9117 24 1 3.4283 9.3234 2.7491 25 6 4.0748 10.5586 1.1030 26 6 3.7391 8.0810 1.0129 27 6 2.2798 2.1209 1.0896 28 6 2.1256 1.6828 2.5232 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9934 4.1409 -1.4097 35 1 3.5558 5.7288 -0.0242 36 1 5.5276 5.6762 2.7175 37 1 6.0155 6.6249 1.2920 38 1 6.8644 7.7302 3.3056 39 1 5.2371 7.7236 4.0329 40 1 8.0763 9.6301 5.0144 41 1 3.0662 10.7096 0.7183 42 1 4.3483 11.3965 1.7440 43 1 4.7753 10.4943 0.2704 44 1 4.3774 8.0737 0.1295 45 1 2.6972 8.1794 0.7081 46 1 1.1194 1.9192 2.8691 47 1 2.2910 0.6077 2.5944 48 1 2.8549 2.2044 3.1430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947845521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:47 Heat of formation + Delta-G solvation = 48.820351 kcal Electronic energy + Delta-G solvation = -27418.723464 eV Core-core repulsion = 23703.476115 eV Total energy + Delta-G solvation = -3715.247349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.62020 -39.24207 -37.45819 -34.97478 -34.44868 -32.37531 -32.27005 -31.35666 -30.06510 -29.20485 -27.41662 -26.27832 -24.86738 -24.16428 -22.75603 -21.86715 -20.87361 -19.87403 -19.81596 -19.04696 -17.56436 -16.37900 -16.02750 -15.73124 -15.50330 -15.10222 -14.96127 -14.31577 -14.15244 -13.88303 -13.72208 -13.50221 -13.34112 -13.26551 -13.13941 -12.80271 -12.69494 -12.59415 -12.49733 -12.25067 -11.76347 -11.54749 -11.15779 -11.05722 -10.97303 -10.86257 -10.82288 -10.61413 -10.24266 -10.06473 -9.97882 -9.68768 -9.66009 -9.59817 -9.26761 -8.80334 -8.51912 -8.33389 -6.58040 -5.72584 -3.16600 1.42312 2.09479 2.10728 3.39876 3.47983 3.49558 3.56834 3.65672 4.13983 4.36954 4.50159 4.53108 4.61545 4.70679 4.86660 5.09096 5.10795 5.25398 5.33232 5.37245 5.41012 5.45456 5.50502 5.57460 5.68000 5.74573 5.85493 5.94223 6.08102 6.22234 6.27288 6.34633 6.37515 6.48928 6.53791 6.59995 6.67579 6.73779 6.87826 7.00646 7.10543 7.15809 7.39097 7.45244 7.74494 7.87598 7.90802 8.52192 8.60613 9.27531 9.91257 10.48887 11.36071 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.026765 B = 0.002600 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.904224 B =10765.448958 C =11079.916668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.363 5.363 4 N -0.301 5.301 5 C 0.082 3.918 6 C -0.293 4.293 7 C 0.591 3.409 8 O -0.549 6.549 9 N -0.721 5.721 10 C 0.154 3.846 11 H 0.081 0.919 12 C -0.146 4.146 13 C 0.176 3.824 14 N -0.588 5.588 15 C -0.249 4.249 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.171 3.829 24 H 0.027 0.973 25 C -0.135 4.135 26 C -0.134 4.134 27 C 0.155 3.845 28 C -0.099 4.099 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.188 0.812 35 H 0.392 0.608 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.020 0.980 40 H 0.252 0.748 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 -17.710 -9.308 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.143 5.143 4 N -0.120 5.120 5 C -0.105 4.105 6 C -0.308 4.308 7 C 0.379 3.621 8 O -0.428 6.428 9 N -0.370 5.370 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.186 4.186 13 C 0.049 3.951 14 N -0.311 5.311 15 C -0.379 4.379 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.729 3.271 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.064 3.936 24 H 0.044 0.956 25 C -0.193 4.193 26 C -0.174 4.174 27 C 0.023 3.977 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.205 0.795 35 H 0.226 0.774 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.304 -18.649 -9.319 24.731 hybrid contribution 1.062 0.964 -0.093 1.437 sum -12.242 -17.685 -9.412 23.478 Atomic orbital electron populations 1.22188 0.93959 1.03256 1.03466 1.21758 0.95500 0.77683 1.04729 1.48541 1.50220 1.12157 1.03396 1.77140 1.22753 1.04514 1.07582 1.24016 0.96943 0.95581 0.93982 1.20140 1.20491 0.96639 0.93520 1.17179 0.76417 0.81593 0.86948 1.90730 1.55549 1.82441 1.14084 1.46065 1.67370 1.13485 1.10052 1.21001 0.96676 0.83773 0.93510 0.90080 1.22565 0.94454 1.00535 1.01078 1.20732 1.01466 0.81784 0.91089 1.44169 1.04843 1.14938 1.67170 1.19197 1.02911 1.11697 1.04063 0.91267 1.25111 1.00407 0.99463 0.94699 1.70037 1.32457 1.47467 1.04658 0.86276 0.83608 0.79477 0.77724 1.20300 1.21821 1.21677 1.20358 0.88321 0.91492 0.93451 0.95574 1.21788 0.99029 0.98312 1.00134 1.22374 0.99981 0.95326 0.99700 1.21525 0.94413 0.90694 0.91069 1.20693 1.05122 1.01348 0.88546 0.91817 0.91482 0.90280 0.88391 0.88628 0.79479 0.77450 0.92885 0.92763 0.89487 0.96179 0.93756 0.94341 0.91928 0.92778 0.91853 0.92718 0.89636 0.91375 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.12 0.78 6.93 -4.04 -0.03 0.76 16 3 N -0.36 -3.79 3.58 -56.60 -0.20 -4.00 16 4 N -0.30 -3.63 12.50 30.86 0.39 -3.25 16 5 C 0.08 0.95 11.50 -16.98 -0.20 0.76 16 6 C -0.29 -3.90 6.13 -105.07 -0.64 -4.54 16 7 C 0.59 9.33 7.78 -12.52 -0.10 9.23 16 8 O -0.55 -10.36 14.50 5.28 0.08 -10.29 16 9 N -0.72 -10.59 5.07 -54.84 -0.28 -10.86 16 10 C 0.15 2.72 2.41 -67.89 -0.16 2.55 16 11 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 12 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 13 C 0.18 4.28 5.28 -3.71 -0.02 4.26 16 14 N -0.59 -14.45 2.99 -164.77 -0.49 -14.94 16 15 C -0.25 -6.65 8.58 -15.06 -0.13 -6.78 16 16 H 0.07 1.80 6.23 -52.48 -0.33 1.47 16 17 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 18 N -0.90 -26.32 11.23 55.49 0.62 -25.70 16 19 Si 0.90 21.67 29.58 -169.99 -5.03 16.65 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 C 0.17 3.50 3.50 -67.60 -0.24 3.27 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.14 -2.50 7.95 37.16 0.30 -2.20 16 26 C -0.13 -2.26 4.84 -26.61 -0.13 -2.39 16 27 C 0.15 1.82 7.01 -81.60 -0.57 1.24 16 28 C -0.10 -0.95 9.57 36.01 0.34 -0.60 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.41 7.02 -51.93 -0.36 0.04 16 34 H 0.19 1.57 7.50 -52.48 -0.39 1.17 16 35 H 0.39 4.61 7.56 -40.82 -0.31 4.31 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.25 7.67 -51.93 -0.40 0.86 16 43 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.45 7.05 -51.92 -0.37 0.09 16 48 H 0.11 1.31 6.50 -51.93 -0.34 0.97 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -33.22 379.73 -8.42 -41.65 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.80 Total: 3.12 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.43 Total: 1.90 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.04 Total: -58.75 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.22 -8.42 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947845521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.467 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds