Wall clock time and date at job start Tue Mar 31 2020 12:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47084 * 2 1 4 4 C 1.35852 * 126.13660 * 269.97120 * 3 2 1 5 5 N 1.30179 * 109.00436 * 179.78428 * 4 3 2 6 6 C 1.35754 * 108.86584 * 0.38113 * 5 4 3 7 7 C 1.47321 * 126.23611 * 179.88250 * 6 5 4 8 8 O 1.21625 * 120.00408 * 185.76070 * 7 6 5 9 9 N 1.34778 * 119.99828 * 5.76040 * 7 6 5 10 10 C 1.46495 * 119.99880 * 5.35198 * 9 7 6 11 11 C 1.46504 * 120.00066 * 185.35376 * 9 7 6 12 12 C 1.52989 * 109.47033 * 240.00216 * 11 9 7 13 13 C 1.53002 * 109.47311 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47249 * 59.99358 * 13 12 11 15 15 N 1.46505 * 109.46846 * 60.00724 * 14 13 12 16 16 C 1.36936 * 120.00234 * 84.99994 * 15 14 13 17 17 H 1.08001 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99946 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00174 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99881 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46870 * 90.00106 * 20 18 16 22 22 H 1.48501 * 109.47231 * 209.99503 * 20 18 16 23 23 H 1.48498 * 109.47593 * 329.99918 * 20 18 16 24 24 C 1.52995 * 109.47360 * 300.00796 * 14 13 12 25 25 C 1.52992 * 109.47446 * 59.99398 * 24 14 13 26 26 C 1.35381 * 126.13466 * 89.99803 * 3 2 1 27 27 H 1.09005 * 109.46844 * 60.00229 * 1 2 3 28 28 H 1.09009 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47366 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.47219 * 239.99720 * 2 1 3 31 31 H 1.09005 * 109.46844 * 119.99771 * 2 1 3 32 32 H 1.07999 * 125.49323 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.47574 * 275.31545 * 10 9 7 34 34 H 1.09004 * 109.47237 * 35.32123 * 10 9 7 35 35 H 1.09006 * 109.46808 * 155.31829 * 10 9 7 36 36 H 1.09003 * 109.46902 * 0.02562 * 11 9 7 37 37 H 1.09003 * 109.47108 * 299.99668 * 12 11 9 38 38 H 1.09004 * 109.47779 * 59.99436 * 12 11 9 39 39 H 1.09005 * 109.47283 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46619 * 299.99790 * 13 12 11 41 41 H 1.08998 * 109.47505 * 180.02562 * 14 13 12 42 42 H 0.97005 * 119.99535 * 264.99704 * 15 14 13 43 43 H 0.96998 * 120.00561 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.46555 * 299.99494 * 24 14 13 45 45 H 1.09004 * 109.47651 * 180.02562 * 24 14 13 46 46 H 1.09005 * 109.47140 * 179.97438 * 25 24 14 47 47 H 1.09004 * 109.47165 * 60.00469 * 25 24 14 48 48 H 1.07994 * 126.57092 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1363 -1.0972 5 7 2.6959 3.3108 -0.7137 6 6 2.7141 3.3479 0.6432 7 6 3.1182 4.4928 1.4777 8 8 3.1915 4.3693 2.6854 9 7 3.4067 5.6772 0.9027 10 6 3.2062 5.8607 -0.5368 11 6 3.9209 6.7810 1.7173 12 6 2.9636 7.9709 1.6264 13 6 3.5008 9.1239 2.4766 14 6 4.8802 9.5384 1.9606 15 7 4.7699 9.9709 0.5652 16 6 4.4181 11.2619 0.2742 17 1 4.2224 11.9614 1.0735 18 6 4.3141 11.6717 -1.0479 19 7 3.9765 12.9127 -1.3276 20 14 4.6547 10.4623 -2.4302 21 1 3.3947 9.7715 -2.8051 22 1 5.1874 11.1936 -3.6078 23 1 5.6525 9.4604 -1.9768 24 6 5.8375 8.3484 2.0515 25 6 5.3003 7.1955 1.2014 26 6 2.2843 2.1338 1.0934 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.1725 1.8153 -2.1221 33 1 4.0824 5.4990 -1.0748 34 1 2.3272 5.3004 -0.8555 35 1 3.0596 6.9194 -0.7511 36 1 4.0031 6.4588 2.7554 37 1 2.8818 8.2929 0.5882 38 1 1.9807 7.6755 1.9935 39 1 2.8185 9.9715 2.4121 40 1 3.5829 8.8021 3.5148 41 1 5.2632 10.3595 2.5665 42 1 4.9460 9.3426 -0.1526 43 1 3.9042 13.1993 -2.2515 44 1 5.9196 8.0268 3.0898 45 1 6.8204 8.6438 1.6844 46 1 5.9826 6.3478 1.2658 47 1 5.2182 7.5171 0.1631 48 1 2.1777 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964209010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:13 Heat of formation + Delta-G solvation = 42.801446 kcal Electronic energy + Delta-G solvation = -27766.750692 eV Core-core repulsion = 24051.242344 eV Total energy + Delta-G solvation = -3715.508348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.46511 -39.79862 -37.96325 -35.51633 -35.13424 -33.02986 -31.04259 -30.64206 -30.28419 -29.83432 -28.16123 -26.54337 -24.66045 -23.56563 -22.95089 -22.13744 -21.38871 -20.98672 -19.25616 -18.33779 -17.71433 -17.56603 -16.45669 -16.13176 -15.87213 -15.09768 -14.87635 -14.65711 -14.42618 -14.34039 -14.07940 -13.98499 -13.50689 -13.39536 -13.16826 -12.76565 -12.66166 -12.48353 -12.30309 -12.20845 -12.02728 -11.92518 -11.86461 -11.64777 -10.92985 -10.72862 -10.65837 -10.45987 -10.29933 -10.10843 -10.00797 -9.90540 -9.81239 -9.53627 -9.44955 -8.89354 -8.82563 -8.27730 -7.17338 -5.70290 -3.04100 1.42670 2.24374 2.27698 3.23562 3.41236 3.44063 3.49287 3.54888 4.03474 4.20946 4.32181 4.40778 4.58205 4.64790 4.81840 4.98750 5.01993 5.13049 5.23429 5.26267 5.38952 5.43293 5.54445 5.60701 5.62195 5.70024 5.75937 5.83205 5.91015 5.98434 6.05742 6.07060 6.14888 6.20294 6.33476 6.35139 6.49299 6.61871 6.67921 6.74611 6.78108 6.95357 6.95612 7.08466 7.52222 7.68103 8.08197 8.36233 8.49535 9.29069 10.01863 10.22898 11.48535 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.003173 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.465789 B = 8822.878863 C = 9731.496142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.458 5.458 4 C 0.180 3.820 5 N -0.456 5.456 6 C -0.055 4.055 7 C 0.599 3.401 8 O -0.554 6.554 9 N -0.593 5.593 10 C 0.084 3.916 11 C 0.142 3.858 12 C -0.117 4.117 13 C -0.130 4.130 14 C 0.178 3.822 15 N -0.745 5.745 16 C -0.236 4.236 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.937 5.937 20 Si 0.878 3.122 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.122 4.122 25 C -0.123 4.123 26 C 0.031 3.969 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.209 0.791 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.360 0.640 43 H 0.258 0.742 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 -29.110 2.476 29.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.140 5.140 4 C -0.103 4.103 5 N -0.175 5.175 6 C -0.184 4.184 7 C 0.387 3.613 8 O -0.432 6.432 9 N -0.322 5.322 10 C -0.059 4.059 11 C 0.039 3.961 12 C -0.156 4.156 13 C -0.170 4.170 14 C 0.068 3.932 15 N -0.389 5.389 16 C -0.366 4.366 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.585 5.585 20 Si 0.709 3.291 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.203 1.203 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.108 4.108 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.225 0.775 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.194 0.806 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.880 -28.371 2.582 28.903 hybrid contribution -0.112 -1.502 -0.919 1.764 sum -4.993 -29.873 1.663 30.333 Atomic orbital electron populations 1.22184 0.93750 1.03419 1.03585 1.21953 0.95895 0.79436 1.05057 1.45550 1.48501 1.13114 1.06877 1.25297 1.03811 0.87611 0.93610 1.70893 1.17779 1.18371 1.10422 1.20604 1.11891 0.95426 0.90501 1.16971 0.76803 0.81444 0.86115 1.90757 1.54996 1.83805 1.13687 1.47755 1.63276 1.11447 1.09764 1.21958 1.02752 1.01956 0.79213 1.21228 0.93328 0.85725 0.95772 1.21731 0.97291 0.94189 1.02371 1.22078 1.00180 0.97525 0.97257 1.20211 0.92069 0.93854 0.87026 1.42846 1.84233 1.10524 1.01285 1.19107 1.37944 0.86410 0.93157 0.89231 1.24643 1.01979 0.95937 0.96754 1.69694 1.54994 1.15645 1.18177 0.86634 0.78171 0.81155 0.83161 1.21016 1.21869 1.20314 1.21790 0.99571 0.95382 0.99335 1.21801 0.95478 0.98074 1.00754 1.22554 1.03172 0.91885 0.93162 0.91569 0.90314 0.91613 0.88446 0.88731 0.77453 0.92647 0.89528 0.91423 0.88528 0.90752 0.92930 0.91339 0.93245 0.92502 0.80627 0.93206 0.91870 0.91576 0.92489 0.91567 0.79740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.24 37.16 0.38 -0.13 16 2 C 0.10 0.31 6.84 -4.05 -0.03 0.28 16 3 N -0.46 -3.35 2.73 -118.36 -0.32 -3.67 16 4 C 0.18 1.52 12.55 -89.90 -1.13 0.39 16 5 N -0.46 -5.64 8.03 -11.03 -0.09 -5.73 16 6 C -0.06 -0.75 6.59 -83.09 -0.55 -1.30 16 7 C 0.60 9.78 7.66 -12.57 -0.10 9.69 16 8 O -0.55 -10.20 16.23 5.26 0.09 -10.12 16 9 N -0.59 -9.53 2.76 -175.25 -0.48 -10.01 16 10 C 0.08 1.27 8.31 59.84 0.50 1.76 16 11 C 0.14 2.34 2.51 -67.94 -0.17 2.17 16 12 C -0.12 -2.06 5.03 -26.74 -0.13 -2.19 16 13 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 14 C 0.18 3.44 3.10 -67.93 -0.21 3.23 16 15 N -0.75 -17.43 4.08 -53.43 -0.22 -17.65 16 16 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 19 N -0.94 -29.63 13.97 55.49 0.78 -28.85 16 20 Si 0.88 22.23 27.73 -169.99 -4.71 17.52 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 24 C -0.12 -2.00 5.61 -26.74 -0.15 -2.15 16 25 C -0.12 -2.00 5.03 -26.74 -0.13 -2.14 16 26 C 0.03 0.32 11.27 -16.64 -0.19 0.13 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.11 8.14 -51.92 -0.42 -0.32 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.21 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 34 H 0.09 1.26 5.89 -51.93 -0.31 0.95 16 35 H 0.07 1.08 6.44 -51.93 -0.33 0.75 16 36 H 0.10 1.66 6.91 -51.93 -0.36 1.31 16 37 H 0.07 1.45 6.13 -51.93 -0.32 1.13 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.36 8.36 3.92 -40.82 -0.16 8.20 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 1.18 6.03 -51.93 -0.31 0.86 16 48 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -35.16 376.10 -9.33 -44.49 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.72 Total: 7.88 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.31 Total: 0.46 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -0.34 Total: -65.91 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.16 -9.33 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964209010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.296 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds