Wall clock time and date at job start Tue Mar 31 2020 12:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47084 * 2 1 4 4 C 1.35852 * 126.13660 * 269.97120 * 3 2 1 5 5 N 1.30179 * 109.00436 * 179.78428 * 4 3 2 6 6 C 1.35754 * 108.86584 * 0.38113 * 5 4 3 7 7 C 1.47321 * 126.23611 * 179.88250 * 6 5 4 8 8 O 1.21625 * 120.00408 * 185.76070 * 7 6 5 9 9 N 1.34778 * 119.99828 * 5.76040 * 7 6 5 10 10 C 1.46495 * 119.99880 * 5.35198 * 9 7 6 11 11 C 1.46504 * 120.00066 * 185.35376 * 9 7 6 12 12 C 1.52989 * 109.47033 * 240.00216 * 11 9 7 13 13 C 1.53002 * 109.47311 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47249 * 59.99358 * 13 12 11 15 15 N 1.46505 * 109.46846 * 60.00724 * 14 13 12 16 16 C 1.36936 * 120.00234 * 84.99994 * 15 14 13 17 17 H 1.08001 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99946 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00174 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99881 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46870 * 90.00106 * 20 18 16 22 22 H 1.48501 * 109.47231 * 209.99503 * 20 18 16 23 23 H 1.48498 * 109.47593 * 329.99918 * 20 18 16 24 24 C 1.52995 * 109.47360 * 300.00796 * 14 13 12 25 25 C 1.52992 * 109.47446 * 59.99398 * 24 14 13 26 26 C 1.35381 * 126.13466 * 89.99803 * 3 2 1 27 27 H 1.09005 * 109.46844 * 60.00229 * 1 2 3 28 28 H 1.09009 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47366 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.47219 * 239.99720 * 2 1 3 31 31 H 1.09005 * 109.46844 * 119.99771 * 2 1 3 32 32 H 1.07999 * 125.49323 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.47574 * 275.31545 * 10 9 7 34 34 H 1.09004 * 109.47237 * 35.32123 * 10 9 7 35 35 H 1.09006 * 109.46808 * 155.31829 * 10 9 7 36 36 H 1.09003 * 109.46902 * 0.02562 * 11 9 7 37 37 H 1.09003 * 109.47108 * 299.99668 * 12 11 9 38 38 H 1.09004 * 109.47779 * 59.99436 * 12 11 9 39 39 H 1.09005 * 109.47283 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46619 * 299.99790 * 13 12 11 41 41 H 1.08998 * 109.47505 * 180.02562 * 14 13 12 42 42 H 0.97005 * 119.99535 * 264.99704 * 15 14 13 43 43 H 0.96998 * 120.00561 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.46555 * 299.99494 * 24 14 13 45 45 H 1.09004 * 109.47651 * 180.02562 * 24 14 13 46 46 H 1.09005 * 109.47140 * 179.97438 * 25 24 14 47 47 H 1.09004 * 109.47165 * 60.00469 * 25 24 14 48 48 H 1.07994 * 126.57092 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1363 -1.0972 5 7 2.6959 3.3108 -0.7137 6 6 2.7141 3.3479 0.6432 7 6 3.1182 4.4928 1.4777 8 8 3.1915 4.3693 2.6854 9 7 3.4067 5.6772 0.9027 10 6 3.2062 5.8607 -0.5368 11 6 3.9209 6.7810 1.7173 12 6 2.9636 7.9709 1.6264 13 6 3.5008 9.1239 2.4766 14 6 4.8802 9.5384 1.9606 15 7 4.7699 9.9709 0.5652 16 6 4.4181 11.2619 0.2742 17 1 4.2224 11.9614 1.0735 18 6 4.3141 11.6717 -1.0479 19 7 3.9765 12.9127 -1.3276 20 14 4.6547 10.4623 -2.4302 21 1 3.3947 9.7715 -2.8051 22 1 5.1874 11.1936 -3.6078 23 1 5.6525 9.4604 -1.9768 24 6 5.8375 8.3484 2.0515 25 6 5.3003 7.1955 1.2014 26 6 2.2843 2.1338 1.0934 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.1725 1.8153 -2.1221 33 1 4.0824 5.4990 -1.0748 34 1 2.3272 5.3004 -0.8555 35 1 3.0596 6.9194 -0.7511 36 1 4.0031 6.4588 2.7554 37 1 2.8818 8.2929 0.5882 38 1 1.9807 7.6755 1.9935 39 1 2.8185 9.9715 2.4121 40 1 3.5829 8.8021 3.5148 41 1 5.2632 10.3595 2.5665 42 1 4.9460 9.3426 -0.1526 43 1 3.9042 13.1993 -2.2515 44 1 5.9196 8.0268 3.0898 45 1 6.8204 8.6438 1.6844 46 1 5.9826 6.3478 1.2658 47 1 5.2182 7.5171 0.1631 48 1 2.1777 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964209010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:12 Heat of formation + Delta-G solvation = 22.253662 kcal Electronic energy + Delta-G solvation = -27767.641711 eV Core-core repulsion = 24051.242344 eV Total energy + Delta-G solvation = -3716.399367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.18237 -41.07481 -39.37250 -36.69393 -35.94559 -34.85949 -32.80925 -31.69886 -31.28735 -30.80992 -29.59929 -27.76213 -25.59799 -24.96936 -24.12744 -23.54673 -22.43601 -21.79470 -20.31843 -19.86328 -19.78181 -18.36444 -17.66363 -17.08808 -16.77486 -16.52415 -16.15725 -15.86125 -15.66538 -15.38661 -15.14921 -15.00297 -14.68117 -14.60606 -14.35522 -14.06728 -13.95185 -13.69556 -13.53912 -13.36604 -13.13691 -13.05531 -12.97396 -12.89727 -12.47401 -12.24703 -12.19262 -12.06423 -11.79528 -11.69462 -11.38243 -11.22135 -11.15445 -10.88879 -10.77204 -10.66181 -9.79857 -9.44984 -9.23493 -7.97571 -5.28474 0.56497 1.38215 1.40834 1.46516 1.47791 1.70216 2.11149 2.50631 2.51342 3.33917 3.38107 3.65651 3.73384 3.83062 3.88406 3.90853 4.06036 4.10635 4.13698 4.27599 4.34365 4.41561 4.42260 4.44083 4.59688 4.60552 4.66409 4.70215 4.78392 4.80645 4.84518 4.93044 5.03116 5.11164 5.13366 5.23600 5.23660 5.24876 5.28586 5.46056 5.46923 5.57147 5.65101 5.84678 6.14006 6.27288 6.42839 6.82043 7.13964 7.19525 7.91773 8.11014 9.24559 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.003173 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.465789 B = 8822.878863 C = 9731.496142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.448 5.448 4 C 0.192 3.808 5 N -0.491 5.491 6 C -0.097 4.097 7 C 0.593 3.407 8 O -0.584 6.584 9 N -0.597 5.597 10 C 0.094 3.906 11 C 0.149 3.851 12 C -0.110 4.110 13 C -0.123 4.123 14 C 0.170 3.830 15 N -0.745 5.745 16 C -0.218 4.218 17 H 0.057 0.943 18 C -0.066 4.066 19 N -0.987 5.987 20 Si 0.944 3.056 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.253 1.253 24 C -0.113 4.113 25 C -0.116 4.116 26 C 0.043 3.957 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.247 0.753 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.363 0.637 43 H 0.255 0.745 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 -33.286 1.924 33.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.129 5.129 4 C -0.092 4.092 5 N -0.211 5.211 6 C -0.224 4.224 7 C 0.384 3.616 8 O -0.466 6.466 9 N -0.326 5.326 10 C -0.048 4.048 11 C 0.046 3.954 12 C -0.148 4.148 13 C -0.163 4.163 14 C 0.062 3.938 15 N -0.389 5.389 16 C -0.349 4.349 17 H 0.075 0.925 18 C -0.257 4.257 19 N -0.639 5.639 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.178 1.178 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.098 4.098 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.263 0.737 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.198 0.802 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.599 -32.614 2.056 33.000 hybrid contribution -0.278 -0.292 -0.655 0.769 sum -4.877 -32.906 1.401 33.295 Atomic orbital electron populations 1.22166 0.93583 1.04401 1.02459 1.22330 0.95902 0.77189 1.07195 1.45812 1.47150 1.14290 1.05665 1.26020 1.01412 0.86552 0.95190 1.70766 1.19675 1.20737 1.09897 1.20373 1.15152 0.95698 0.91213 1.17416 0.76053 0.82026 0.86144 1.90718 1.56480 1.84392 1.14962 1.47793 1.63393 1.11441 1.09994 1.21884 1.03169 1.01008 0.78768 1.21066 0.93101 0.85399 0.95847 1.21624 0.97820 0.94516 1.00841 1.21962 0.98594 0.96862 0.98929 1.20450 0.93623 0.95048 0.84673 1.42830 1.83956 1.08803 1.03290 1.19058 1.35920 0.87681 0.92263 0.92482 1.25410 1.03010 0.97774 0.99523 1.69876 1.57448 1.18050 1.18483 0.85558 0.78702 0.79150 0.79382 1.20304 1.22499 1.17791 1.21714 0.98518 0.93777 1.01122 1.21737 0.95561 0.98377 0.99764 1.22720 1.01491 0.91195 0.94407 0.92135 0.88296 0.93274 0.85649 0.87361 0.73669 0.92316 0.89029 0.92738 0.88822 0.92849 0.92839 0.93803 0.90528 0.93291 0.80224 0.93594 0.89163 0.91263 0.91124 0.92961 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 10.24 71.98 0.74 0.24 16 2 C 0.09 0.23 6.84 86.38 0.59 0.82 16 3 N -0.45 -5.21 2.73 -528.38 -1.44 -6.65 16 4 C 0.19 2.67 12.55 180.10 2.26 4.93 16 5 N -0.49 -11.33 8.03 -188.81 -1.52 -12.85 16 6 C -0.10 -2.52 6.59 40.51 0.27 -2.25 16 7 C 0.59 19.13 7.66 86.63 0.66 19.80 16 8 O -0.58 -21.37 16.23 -4.11 -0.07 -21.44 16 9 N -0.60 -18.84 2.76 -826.60 -2.28 -21.12 16 10 C 0.09 2.79 8.31 127.77 1.06 3.85 16 11 C 0.15 4.76 2.51 44.98 0.11 4.88 16 12 C -0.11 -3.82 5.03 30.59 0.15 -3.66 16 13 C -0.12 -4.38 5.61 30.59 0.17 -4.21 16 14 C 0.17 6.47 3.10 44.99 0.14 6.61 16 15 N -0.74 -34.74 4.08 -322.95 -1.32 -36.06 16 16 C -0.22 -12.50 10.41 84.03 0.87 -11.62 16 17 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 18 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 19 N -0.99 -64.39 13.97 21.65 0.30 -64.09 16 20 Si 0.94 46.32 27.73 68.60 1.90 48.23 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 23 H -0.25 -11.28 6.52 99.48 0.65 -10.64 16 24 C -0.11 -3.46 5.61 30.59 0.17 -3.29 16 25 C -0.12 -3.58 5.03 30.59 0.15 -3.43 16 26 C 0.04 0.81 11.27 83.72 0.94 1.75 16 27 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.10 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.25 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 34 H 0.09 2.62 5.89 -2.39 -0.01 2.60 16 35 H 0.05 1.73 6.44 -2.38 -0.02 1.71 16 36 H 0.09 3.10 6.91 -2.39 -0.02 3.09 16 37 H 0.05 2.09 6.13 -2.39 -0.01 2.07 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 42 H 0.36 16.52 3.92 -92.70 -0.36 16.15 16 43 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 44 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.05 1.77 6.03 -2.38 -0.01 1.76 16 48 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -78.97 376.10 4.88 -74.09 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.53 Total: 28.98 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 8.77 Total: 10.91 kcal Atomic # 7 Polarization: -134.52 SS G_CDS: -6.25 Total: -140.77 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.07 Total: -21.44 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.23 kcal Total: -78.97 4.88 -74.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964209010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.339 kcal (2) G-P(sol) polarization free energy of solvation -78.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds