Wall clock time and date at job start Tue Mar 31 2020 13:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47314 * 2 1 4 4 C 1.34776 * 120.00303 * 83.87930 * 3 2 1 5 5 O 1.21568 * 120.00305 * 183.85841 * 4 3 2 6 6 C 1.47710 * 119.99931 * 3.85146 * 4 3 2 7 7 C 1.41504 * 126.51921 * 174.01253 * 6 4 3 8 8 C 1.35373 * 105.50215 * 180.02562 * 7 6 4 9 9 C 1.50698 * 126.38298 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46805 * 145.00306 * 9 8 7 11 11 C 1.52996 * 109.47017 * 265.00220 * 9 8 7 12 12 N 1.35036 * 107.22872 * 0.02562 * 8 7 6 13 13 H 0.96998 * 124.88678 * 179.97438 * 12 8 7 14 14 N 1.28473 * 110.23095 * 0.22821 * 12 8 7 15 15 C 1.46505 * 119.99870 * 263.88305 * 3 2 1 16 16 H 1.08993 * 110.63864 * 1.68574 * 15 3 2 17 17 C 1.55156 * 110.72071 * 125.02469 * 15 3 2 18 18 C 1.54909 * 101.58517 * 153.86393 * 17 15 3 19 19 N 1.47423 * 104.82958 * 322.98890 * 18 17 15 20 20 C 1.36937 * 125.65139 * 204.16212 * 19 18 17 21 21 H 1.07997 * 120.00138 * 179.97438 * 20 19 18 22 22 C 1.38818 * 119.99754 * 359.96022 * 20 19 18 23 23 N 1.31618 * 119.99759 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99993 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47259 * 59.99777 * 24 22 20 26 26 H 1.48504 * 109.46914 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47144 * 299.99613 * 24 22 20 28 28 C 1.47023 * 108.70488 * 24.12762 * 19 18 17 29 29 H 1.09003 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47337 * 299.99917 * 1 2 3 31 31 H 1.09004 * 109.47260 * 60.00096 * 1 2 3 32 32 H 1.09000 * 109.47183 * 239.99550 * 2 1 3 33 33 H 1.09004 * 109.47260 * 119.99904 * 2 1 3 34 34 H 1.07999 * 127.24810 * 0.02562 * 7 6 4 35 35 H 1.08998 * 109.47165 * 25.00859 * 9 8 7 36 36 H 1.08999 * 109.47147 * 59.99635 * 10 9 8 37 37 H 1.08996 * 109.46704 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47082 * 300.00419 * 10 9 8 39 39 H 1.08998 * 109.47206 * 60.00575 * 11 9 8 40 40 H 1.09010 * 109.46589 * 180.02562 * 11 9 8 41 41 H 1.09002 * 109.47284 * 299.99680 * 11 9 8 42 42 H 1.09003 * 111.00170 * 271.93691 * 17 15 3 43 43 H 1.09000 * 111.00418 * 35.78578 * 17 15 3 44 44 H 1.08990 * 110.37162 * 204.15037 * 18 17 15 45 45 H 1.09002 * 110.36449 * 81.82267 * 18 17 15 46 46 H 0.96998 * 119.99726 * 180.02562 * 23 22 20 47 47 H 1.08999 * 109.88410 * 239.52371 * 28 19 18 48 48 H 1.09003 * 109.88548 * 118.35999 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1257 2.0580 1.1605 5 8 2.4637 3.2257 1.1541 6 6 1.8324 1.3811 2.4402 7 6 2.0126 1.9174 3.7372 8 6 1.6139 0.9443 4.5897 9 6 1.6096 1.0210 6.0947 10 6 0.4077 0.2479 6.6412 11 6 2.9010 0.4085 6.6403 12 7 1.2210 -0.1079 3.8400 13 1 0.8864 -0.9469 4.1936 14 7 1.3591 0.1602 2.5912 15 6 2.3900 2.0267 -1.2616 16 1 2.2162 1.3553 -2.1024 17 6 1.6139 3.3573 -1.4469 18 6 2.5758 4.1534 -2.3637 19 7 3.9268 3.7952 -1.8949 20 6 5.0547 4.5549 -2.0552 21 1 6.0017 4.2029 -1.6735 22 6 4.9810 5.7775 -2.7085 23 7 3.8271 6.2062 -3.1744 24 14 6.5198 6.8136 -2.9278 25 1 7.5242 6.0488 -3.7098 26 1 6.1759 8.0633 -3.6525 27 1 7.0827 7.1520 -1.5959 28 6 3.8624 2.4875 -1.2260 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3888 2.8969 3.9931 35 1 1.5424 2.0637 6.4051 36 1 0.4747 -0.7948 6.3307 37 1 0.4043 0.3038 7.7297 38 1 -0.5124 0.6842 6.2524 39 1 3.7572 0.9593 6.2510 40 1 2.8976 0.4636 7.7290 41 1 2.9680 -0.6343 6.3299 42 1 0.6568 3.1860 -1.9396 43 1 1.4747 3.8646 -0.4922 44 1 2.4070 5.2244 -2.2519 45 1 2.4433 3.8542 -3.4034 46 1 3.7757 7.0603 -3.6312 47 1 4.1962 2.5828 -0.1928 48 1 4.4886 1.7692 -1.7552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033965035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:19 Heat of formation + Delta-G solvation = 77.750551 kcal Electronic energy + Delta-G solvation = -28015.994585 eV Core-core repulsion = 24302.001744 eV Total energy + Delta-G solvation = -3713.992842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.82648 -39.66035 -36.60919 -36.07631 -35.26213 -32.41442 -31.68066 -30.13996 -29.89357 -28.82135 -27.64935 -26.97218 -24.72155 -23.87251 -23.06815 -22.40832 -21.04589 -20.42334 -19.96556 -18.08236 -17.81048 -16.75907 -16.56309 -15.87099 -15.58474 -14.99213 -14.63251 -14.47176 -14.21358 -14.06969 -13.77148 -13.60171 -13.53068 -13.34517 -13.02498 -12.75814 -12.70658 -12.00514 -11.83751 -11.75813 -11.66622 -11.59203 -11.53737 -11.34359 -11.16459 -10.89208 -10.75156 -10.64410 -10.44535 -10.35852 -9.99973 -9.66205 -9.41469 -9.34088 -9.07825 -9.03461 -8.46767 -8.12467 -6.62031 -5.46697 -2.86817 1.63081 2.08853 2.71288 3.32012 3.52449 3.55687 3.57803 3.69617 4.16712 4.34548 4.48270 4.63653 4.65839 4.94989 5.04473 5.11592 5.20392 5.26927 5.33680 5.42188 5.51282 5.54107 5.60015 5.62039 5.66199 5.70130 5.74360 5.81017 5.83928 5.88864 5.96388 6.01302 6.08039 6.26000 6.42470 6.50879 6.70957 6.74174 6.79492 6.89449 6.94156 7.36401 7.66983 7.76260 7.81547 7.88973 8.05629 8.55529 8.63201 9.40580 10.01825 10.67702 11.57231 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.003233 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.793120 B = 8659.471442 C = 9719.281365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 N -0.593 5.593 4 C 0.590 3.410 5 O -0.500 6.500 6 C 0.002 3.998 7 C -0.175 4.175 8 C 0.019 3.981 9 C -0.026 4.026 10 C -0.153 4.153 11 C -0.146 4.146 12 N -0.387 5.387 13 H 0.439 0.561 14 N -0.257 5.257 15 C 0.135 3.865 16 H 0.089 0.911 17 C -0.158 4.158 18 C 0.159 3.841 19 N -0.596 5.596 20 C -0.213 4.213 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.134 3.866 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.008 0.992 46 H 0.250 0.750 47 H 0.034 0.966 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 -17.549 18.525 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.375 3.625 5 O -0.372 6.372 6 C -0.159 4.159 7 C -0.203 4.203 8 C -0.107 4.107 9 C -0.046 4.046 10 C -0.210 4.210 11 C -0.204 4.204 12 N -0.100 5.100 13 H 0.283 0.717 14 N -0.093 5.093 15 C 0.032 3.968 16 H 0.107 0.893 17 C -0.197 4.197 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.342 4.342 21 H 0.092 0.908 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.744 3.256 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.007 3.993 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.179 0.821 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -9.565 -17.589 17.768 26.769 hybrid contribution 0.791 0.520 0.418 1.034 sum -8.774 -17.070 18.185 26.440 Atomic orbital electron populations 1.22066 0.96182 1.01332 1.01953 1.21828 0.94501 0.82474 1.03457 1.47842 1.64468 1.13968 1.06330 1.16973 0.78293 0.85739 0.81481 1.90898 1.45553 1.14845 1.85921 1.22179 1.06214 0.91866 0.95604 1.21540 1.07288 1.01210 0.90262 1.21306 1.04860 0.89498 0.95004 1.19760 0.96204 1.02246 0.86436 1.21894 0.97642 0.99608 1.01875 1.21873 0.96684 1.00835 1.01008 1.43403 1.48087 1.15007 1.03499 0.71694 1.73772 1.19465 1.17064 0.98955 1.22230 0.96656 0.94657 0.83208 0.89329 1.23481 0.97733 0.95739 1.02760 1.21836 0.81642 1.01182 0.91997 1.44294 1.05496 1.16708 1.65688 1.19016 0.86587 0.98577 1.29974 0.90773 1.24753 0.97155 0.97897 1.01083 1.69797 1.22451 1.21224 1.43868 0.86160 0.82114 0.79677 0.77606 1.21408 1.21678 1.21257 1.21480 0.92406 0.88728 0.96719 0.92292 0.92589 0.92896 0.91048 0.88353 0.82146 0.88369 0.92960 0.91330 0.91996 0.91722 0.91730 0.92776 0.93050 0.89537 0.87591 0.97358 0.93891 0.94842 0.96557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.76 37.16 0.36 -1.46 16 2 C 0.10 1.30 5.71 -4.04 -0.02 1.28 16 3 N -0.59 -10.10 2.55 -165.18 -0.42 -10.53 16 4 C 0.59 11.02 6.72 -12.39 -0.08 10.94 16 5 O -0.50 -11.48 13.30 5.31 0.07 -11.41 16 6 C 0.00 0.03 6.66 -82.76 -0.55 -0.52 16 7 C -0.18 -2.31 10.73 -39.36 -0.42 -2.73 16 8 C 0.02 0.18 5.92 -82.21 -0.49 -0.31 16 9 C -0.03 -0.17 3.32 -91.77 -0.30 -0.47 16 10 C -0.15 -0.68 8.95 37.16 0.33 -0.35 16 11 C -0.15 -0.84 9.17 37.16 0.34 -0.50 16 12 N -0.39 -3.41 6.64 33.50 0.22 -3.19 16 13 H 0.44 2.32 8.14 -190.44 -1.55 0.77 16 14 N -0.26 -3.09 7.58 33.42 0.25 -2.83 16 15 C 0.14 2.66 3.44 -66.09 -0.23 2.44 16 16 H 0.09 1.56 7.80 -51.93 -0.41 1.15 16 17 C -0.16 -3.46 6.39 -24.58 -0.16 -3.62 16 18 C 0.16 4.22 5.89 -2.53 -0.01 4.20 16 19 N -0.60 -16.75 3.39 -170.07 -0.58 -17.33 16 20 C -0.21 -6.41 10.27 -15.06 -0.15 -6.57 16 21 H 0.07 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 23 N -0.92 -28.56 10.09 55.49 0.56 -28.00 16 24 Si 0.91 23.38 29.55 -169.99 -5.02 18.36 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.13 3.17 6.51 -3.06 -0.02 3.15 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.71 7.11 -51.93 -0.37 0.35 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 33 H 0.10 1.23 5.32 -51.93 -0.28 0.95 16 34 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.18 7.43 -51.93 -0.39 -0.21 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 2.08 5.68 -51.93 -0.29 1.78 16 44 H 0.11 3.17 5.87 -51.93 -0.31 2.87 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.03 0.85 6.40 -51.93 -0.33 0.52 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -35.74 374.72 -9.72 -45.46 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.95 Total: -1.15 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.50 Total: 4.98 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.04 Total: -61.88 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.74 -9.72 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033965035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.207 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds