Wall clock time and date at job start Tue Mar 31 2020 13:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47262 * 2 1 4 4 C 1.34772 * 120.00172 * 83.87957 * 3 2 1 5 5 O 1.21578 * 120.00278 * 183.85145 * 4 3 2 6 6 C 1.47710 * 120.00061 * 3.85113 * 4 3 2 7 7 C 1.41502 * 126.51985 * 174.01223 * 6 4 3 8 8 C 1.35363 * 105.50491 * 180.02562 * 7 6 4 9 9 N 1.35038 * 107.22951 * 0.02562 * 8 7 6 10 10 C 1.46491 * 124.88697 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47458 * 84.99587 * 10 9 8 12 12 C 1.53004 * 109.46991 * 324.99596 * 10 9 8 13 13 N 1.28473 * 110.22942 * 0.22634 * 9 8 7 14 14 C 1.46507 * 119.99903 * 263.87870 * 3 2 1 15 15 H 1.09001 * 110.64091 * 1.68822 * 14 3 2 16 16 C 1.55159 * 110.71675 * 125.02218 * 14 3 2 17 17 C 1.54911 * 101.57863 * 153.86832 * 16 14 3 18 18 N 1.47432 * 104.83086 * 322.98775 * 17 16 14 19 19 C 1.36933 * 125.64744 * 204.16534 * 18 17 16 20 20 H 1.08004 * 119.99774 * 179.97438 * 19 18 17 21 21 C 1.38818 * 120.00189 * 359.95852 * 19 18 17 22 22 N 1.31616 * 119.99847 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99750 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47301 * 90.00261 * 23 21 19 25 25 H 1.48508 * 109.46942 * 210.00009 * 23 21 19 26 26 H 1.48496 * 109.47496 * 330.00232 * 23 21 19 27 27 C 1.47022 * 108.70134 * 24.13432 * 18 17 16 28 28 H 1.09005 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47433 * 300.00275 * 1 2 3 30 30 H 1.09001 * 109.47120 * 60.00095 * 1 2 3 31 31 H 1.09001 * 109.47433 * 239.99724 * 2 1 3 32 32 H 1.09001 * 109.47120 * 119.99905 * 2 1 3 33 33 H 1.08003 * 127.24475 * 0.02562 * 7 6 4 34 34 H 1.07994 * 126.38855 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47225 * 205.00313 * 10 9 8 36 36 H 1.08991 * 109.47009 * 299.99901 * 11 10 9 37 37 H 1.09006 * 109.46975 * 60.00379 * 11 10 9 38 38 H 1.09002 * 109.47146 * 179.97438 * 11 10 9 39 39 H 1.08994 * 109.47059 * 300.00155 * 12 10 9 40 40 H 1.09004 * 109.47030 * 60.00391 * 12 10 9 41 41 H 1.09006 * 109.46801 * 179.97438 * 12 10 9 42 42 H 1.08998 * 111.00219 * 271.93855 * 16 14 3 43 43 H 1.08995 * 111.00345 * 35.79521 * 16 14 3 44 44 H 1.08997 * 110.36491 * 204.15607 * 17 16 14 45 45 H 1.09001 * 110.37047 * 81.82689 * 17 16 14 46 46 H 0.96992 * 119.99975 * 179.97438 * 22 21 19 47 47 H 1.09008 * 109.87873 * 239.52418 * 27 18 17 48 48 H 1.08990 * 109.88431 * 118.35708 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1257 2.0580 1.1605 5 8 2.4638 3.2258 1.1542 6 6 1.8324 1.3810 2.4402 7 6 2.0125 1.9174 3.7372 8 6 1.6139 0.9444 4.5896 9 7 1.2210 -0.1079 3.8400 10 6 0.7157 -1.3749 4.3741 11 6 -0.7847 -1.2511 4.6473 12 6 1.4457 -1.7063 5.6773 13 7 1.3590 0.1602 2.5912 14 6 2.3901 2.0267 -1.2616 15 1 2.2163 1.3553 -2.1025 16 6 1.6138 3.3573 -1.4469 17 6 2.5758 4.1534 -2.3638 18 7 3.9269 3.7952 -1.8949 19 6 5.0547 4.5549 -2.0551 20 1 6.0017 4.2029 -1.6734 21 6 4.9811 5.7775 -2.7086 22 7 3.8270 6.2066 -3.1736 23 14 6.5199 6.8135 -2.9278 24 1 7.1826 6.4512 -4.2064 25 1 6.1492 8.2514 -2.9525 26 1 7.4511 6.5618 -1.7989 27 6 3.8624 2.4875 -1.2260 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3888 2.8969 3.9930 34 1 1.6115 0.9990 5.6682 35 1 0.8886 -2.1698 3.6486 36 1 -0.9575 -0.4564 5.3728 37 1 -1.3047 -1.0151 3.7188 38 1 -1.1607 -2.1941 5.0442 39 1 2.5145 -1.7945 5.4827 40 1 1.2728 -0.9115 6.4029 41 1 1.0693 -2.6489 6.0749 42 1 0.6568 3.1859 -1.9397 43 1 1.4747 3.8646 -0.4923 44 1 2.4070 5.2243 -2.2518 45 1 2.4433 3.8541 -3.4035 46 1 3.7754 7.0609 -3.6299 47 1 4.1962 2.5828 -0.1927 48 1 4.4885 1.7692 -1.7552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033973771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:35 Heat of formation + Delta-G solvation = 94.035177 kcal Electronic energy + Delta-G solvation = -28208.881569 eV Core-core repulsion = 24495.594882 eV Total energy + Delta-G solvation = -3713.286687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.74436 -39.64434 -36.68540 -36.02451 -35.27609 -32.29097 -30.95142 -30.39196 -30.06403 -28.79486 -27.87842 -26.93218 -24.73136 -23.90768 -23.13278 -22.24562 -20.57341 -20.30638 -19.95690 -18.54951 -17.44045 -16.78372 -16.60295 -16.10756 -15.43997 -14.94966 -14.67094 -14.46926 -14.18827 -13.94738 -13.69579 -13.46839 -13.40874 -13.18703 -12.96029 -12.83234 -12.72609 -12.62187 -11.99866 -11.90259 -11.79839 -11.68179 -11.57339 -11.33235 -11.20929 -10.87530 -10.74097 -10.64397 -10.42399 -10.34101 -9.96402 -9.65075 -9.39713 -9.19005 -9.05709 -9.02722 -8.46204 -8.09565 -6.61077 -5.46017 -2.86024 1.69807 2.20125 2.27484 3.35044 3.52128 3.56470 3.59492 3.74726 3.98101 4.30227 4.48734 4.56860 4.64899 4.66761 4.91250 4.97651 5.10690 5.15606 5.24003 5.27980 5.44237 5.47353 5.56400 5.58814 5.61507 5.70000 5.71601 5.75310 5.81296 5.85932 5.97663 6.02339 6.09845 6.28030 6.47466 6.53924 6.72290 6.72661 6.80873 6.82632 6.95049 7.38567 7.69232 7.80973 7.83450 7.96371 8.06631 8.56505 8.67422 9.41367 10.02625 10.68565 11.57990 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.003087 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.821501 B = 9069.116870 C = 9684.614294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.592 3.408 5 O -0.502 6.502 6 C -0.006 4.006 7 C -0.179 4.179 8 C -0.021 4.021 9 N -0.285 5.285 10 C 0.143 3.857 11 C -0.165 4.165 12 C -0.165 4.165 13 N -0.258 5.258 14 C 0.136 3.864 15 H 0.088 0.912 16 C -0.158 4.158 17 C 0.159 3.841 18 N -0.596 5.596 19 C -0.212 4.212 20 H 0.075 0.925 21 C -0.015 4.015 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.134 3.866 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.176 0.824 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.008 0.992 46 H 0.250 0.750 47 H 0.034 0.966 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 -20.103 17.655 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.377 3.623 5 O -0.374 6.374 6 C -0.167 4.167 7 C -0.207 4.207 8 C -0.164 4.164 9 N -0.074 5.074 10 C 0.042 3.958 11 C -0.223 4.223 12 C -0.223 4.223 13 N -0.094 5.094 14 C 0.033 3.967 15 H 0.106 0.894 16 C -0.197 4.197 17 C 0.033 3.967 18 N -0.322 5.322 19 C -0.340 4.340 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.573 5.573 23 Si 0.744 3.256 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.007 3.993 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.193 0.807 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -10.908 -20.314 17.006 28.651 hybrid contribution 0.952 1.009 0.351 1.431 sum -9.956 -19.305 17.357 27.804 Atomic orbital electron populations 1.22054 0.96242 1.01230 1.01897 1.21814 0.94461 0.82519 1.03377 1.47833 1.64544 1.13956 1.06329 1.16983 0.78163 0.85697 0.81480 1.90894 1.45681 1.14888 1.85941 1.22198 1.06855 0.92009 0.95590 1.21798 1.06865 1.01333 0.90687 1.22679 1.05958 0.88701 0.99059 1.45868 1.45238 1.12925 1.03361 1.21516 0.94724 0.82660 0.96901 1.22223 0.93447 1.03361 1.03256 1.22197 1.01348 1.03208 0.95538 1.73715 1.19083 1.16934 0.99634 1.22220 0.96628 0.94634 0.83244 0.89380 1.23477 0.97708 0.95760 1.02750 1.21838 0.81654 1.01182 0.91989 1.44305 1.05501 1.16726 1.65669 1.19064 0.86592 0.98546 1.29820 0.90725 1.24754 0.97150 0.97908 1.01140 1.69806 1.22377 1.21166 1.43985 0.86078 0.82089 0.79723 0.77680 1.21850 1.21763 1.20803 1.21479 0.92433 0.88701 0.96720 0.92384 0.92617 0.92946 0.91151 0.88359 0.82199 0.80724 0.87420 0.91630 0.91318 0.90196 0.91229 0.91240 0.89790 0.93078 0.89535 0.87598 0.97369 0.93952 0.94826 0.96574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.76 37.16 0.36 -1.48 16 2 C 0.10 1.35 5.71 -4.04 -0.02 1.32 16 3 N -0.59 -10.31 2.55 -165.18 -0.42 -10.74 16 4 C 0.59 11.29 6.72 -12.39 -0.08 11.21 16 5 O -0.50 -11.72 13.30 5.30 0.07 -11.65 16 6 C -0.01 -0.10 6.66 -82.76 -0.55 -0.65 16 7 C -0.18 -2.42 10.81 -39.36 -0.43 -2.85 16 8 C -0.02 -0.21 10.54 -17.17 -0.18 -0.39 16 9 N -0.29 -2.79 3.22 -54.83 -0.18 -2.97 16 10 C 0.14 0.83 3.80 -67.93 -0.26 0.57 16 11 C -0.16 -0.78 9.52 37.16 0.35 -0.43 16 12 C -0.16 -0.60 8.80 37.16 0.33 -0.28 16 13 N -0.26 -3.29 7.32 33.42 0.24 -3.05 16 14 C 0.14 2.70 3.44 -66.09 -0.23 2.48 16 15 H 0.09 1.57 7.80 -51.93 -0.41 1.16 16 16 C -0.16 -3.49 6.39 -24.58 -0.16 -3.65 16 17 C 0.16 4.25 5.89 -2.52 -0.01 4.23 16 18 N -0.60 -16.87 3.39 -170.07 -0.58 -17.45 16 19 C -0.21 -6.41 10.27 -15.06 -0.15 -6.56 16 20 H 0.07 2.19 7.83 -52.48 -0.41 1.78 16 21 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 22 N -0.92 -28.70 10.09 55.49 0.56 -28.14 16 23 Si 0.91 23.50 29.55 -169.99 -5.02 18.48 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.13 3.20 6.51 -3.07 -0.02 3.18 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.73 7.11 -51.93 -0.37 0.36 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 32 H 0.10 1.28 5.32 -51.93 -0.28 1.00 16 33 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.18 1.07 7.16 -52.49 -0.38 0.69 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.22 7.05 -51.93 -0.37 -0.15 16 41 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 2.10 5.68 -51.93 -0.29 1.81 16 44 H 0.11 3.19 5.87 -51.93 -0.30 2.89 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.03 0.86 6.40 -51.92 -0.33 0.53 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -36.38 375.06 -8.57 -44.96 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.75 Total: -1.25 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.15 Total: 6.15 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.37 Total: -62.33 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.38 -8.57 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033973771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.991 kcal (2) G-P(sol) polarization free energy of solvation -36.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds