Wall clock time and date at job start Tue Mar 31 2020 13:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47113 * 2 1 4 4 C 1.36940 * 119.99689 * 275.73083 * 3 2 1 5 5 H 1.07999 * 120.00087 * 33.26732 * 4 3 2 6 6 C 1.38817 * 119.99945 * 213.26835 * 4 3 2 7 7 N 1.31625 * 119.99859 * 17.27457 * 6 4 3 8 8 Si 1.86791 * 120.00207 * 197.26708 * 6 4 3 9 9 H 1.48500 * 109.46898 * 60.00204 * 8 6 4 10 10 H 1.48496 * 109.47467 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47291 * 300.00626 * 8 6 4 12 12 C 1.46497 * 120.00321 * 95.73169 * 3 2 1 13 13 H 1.08996 * 109.47493 * 180.08981 * 12 3 2 14 14 C 1.53008 * 109.47240 * 60.08786 * 12 3 2 15 15 C 1.53002 * 109.47142 * 300.08940 * 12 3 2 16 16 N 1.46499 * 109.46783 * 305.00121 * 15 12 3 17 17 C 1.34777 * 119.99809 * 180.02562 * 16 15 12 18 18 O 1.21604 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.47457 * 120.00126 * 179.97438 * 17 16 15 20 20 C 1.39531 * 120.63513 * 0.24319 * 19 17 16 21 21 N 1.31632 * 120.62667 * 180.26453 * 20 19 17 22 22 C 1.32173 * 122.11802 * 359.74087 * 21 20 19 23 23 C 1.37782 * 121.22117 * 0.02562 * 22 21 20 24 24 C 1.39489 * 119.20830 * 359.97438 * 23 22 21 25 25 N 1.38458 * 120.94920 * 179.97438 * 24 23 22 26 26 C 1.46898 * 111.00215 * 60.00589 * 25 24 23 27 27 C 1.46898 * 111.00311 * 296.04481 * 25 24 23 28 28 H 1.08999 * 109.47204 * 60.00149 * 1 2 3 29 29 H 1.08999 * 109.46889 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47120 * 300.00287 * 1 2 3 31 31 H 1.08997 * 109.47120 * 239.99713 * 2 1 3 32 32 H 1.08999 * 109.47204 * 119.99851 * 2 1 3 33 33 H 0.96990 * 119.99946 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47328 * 180.02562 * 14 12 3 35 35 H 1.09005 * 109.47002 * 300.00229 * 14 12 3 36 36 H 1.09003 * 109.46792 * 59.99766 * 14 12 3 37 37 H 1.08998 * 109.46980 * 185.00003 * 15 12 3 38 38 H 1.09005 * 109.46942 * 64.99602 * 15 12 3 39 39 H 0.96997 * 120.00304 * 359.97438 * 16 15 12 40 40 H 1.08002 * 119.68754 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.38942 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.39229 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.46961 * 59.99300 * 26 25 24 44 44 H 1.09008 * 109.46651 * 299.99837 * 26 25 24 45 45 H 1.08995 * 109.47107 * 180.02562 * 26 25 24 46 46 H 1.08995 * 109.47789 * 179.97438 * 27 25 24 47 47 H 1.09002 * 109.46990 * 300.00560 * 27 25 24 48 48 H 1.09004 * 109.46548 * 59.99938 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4370 1.8809 -1.9832 6 6 3.1501 2.9986 -1.3440 7 7 4.1872 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7149 9 1 1.8243 5.0895 -2.5331 10 1 4.2443 5.1372 -2.6755 11 1 2.9808 3.5678 -4.0256 12 6 2.3820 2.0296 1.2623 13 1 2.7189 3.0471 1.0643 14 6 3.5078 1.2414 1.9349 15 6 1.1630 2.0668 2.1863 16 7 0.0466 2.7173 1.4957 17 6 -1.1387 2.8638 2.1204 18 8 -1.2815 2.4557 3.2570 19 6 -2.2622 3.5190 1.4256 20 6 -2.1145 3.9877 0.1197 21 7 -3.1160 4.5772 -0.4985 22 6 -4.2942 4.7472 0.0760 23 6 -4.5314 4.3117 1.3615 24 6 -3.5068 3.6796 2.0660 25 7 -3.7055 3.2283 3.3598 26 6 -4.7856 2.2339 3.4104 27 6 -3.9769 4.3473 4.2720 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.8963 3.6434 -0.6477 34 1 3.7780 1.7235 2.8743 35 1 3.1708 0.2238 2.1329 36 1 4.3762 1.2148 1.2766 37 1 1.4080 2.6269 3.0886 38 1 0.8801 1.0492 2.4557 39 1 0.1606 3.0431 0.5893 40 1 -1.1683 3.8691 -0.3873 41 1 -5.0855 5.2366 -0.4724 42 1 -5.4994 4.4573 1.8178 43 1 -4.5266 1.3837 2.7795 44 1 -5.7111 2.6842 3.0514 45 1 -4.9209 1.8965 4.4380 46 1 -4.1295 3.9647 5.2811 47 1 -3.1299 5.0334 4.2673 48 1 -4.8730 4.8741 3.9441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156428721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:17 Heat of formation + Delta-G solvation = 44.946827 kcal Electronic energy + Delta-G solvation = -28680.206940 eV Core-core repulsion = 24964.791622 eV Total energy + Delta-G solvation = -3715.415318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.79811 -38.67264 -37.47005 -36.74238 -33.56966 -31.96907 -31.74540 -31.14017 -30.66212 -28.14090 -27.76472 -26.03096 -24.99418 -23.97374 -23.81359 -21.79873 -21.42701 -20.09987 -19.23735 -17.73450 -16.96196 -16.88675 -16.52152 -15.38994 -15.17693 -14.86749 -14.67430 -14.59128 -14.55243 -14.02857 -13.99788 -13.57915 -13.40160 -12.93827 -12.66415 -12.53336 -12.41530 -12.27000 -12.09936 -12.00849 -11.86494 -11.77892 -11.46501 -11.03196 -10.93874 -10.76032 -10.64331 -10.29788 -10.06352 -9.89908 -9.61509 -9.59866 -9.40795 -9.24466 -9.21805 -8.48935 -8.43014 -8.27116 -6.64544 -5.86383 -3.35022 0.71216 1.01982 3.22987 3.34992 3.41559 3.43610 3.60836 3.74598 3.97618 4.32802 4.44394 4.66763 4.79585 4.94367 5.07580 5.10310 5.25178 5.28769 5.34506 5.41171 5.46776 5.53354 5.56507 5.71919 5.72957 5.93302 6.03700 6.09869 6.24096 6.30355 6.42040 6.42849 6.52789 6.58303 6.66261 6.71972 6.72430 6.86560 6.94533 7.12481 7.16579 7.19928 7.51379 7.60611 7.79225 7.84720 8.23359 8.45305 8.84331 9.18347 9.79771 10.37089 11.20100 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.004526 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.805900 B = 6185.332428 C = 7207.189975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.265 4.265 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.106 3.894 16 N -0.701 5.701 17 C 0.549 3.451 18 O -0.517 6.517 19 C -0.161 4.161 20 C 0.144 3.856 21 N -0.489 5.489 22 C 0.122 3.878 23 C -0.220 4.220 24 C 0.188 3.812 25 N -0.491 5.491 26 C 0.034 3.966 27 C 0.036 3.964 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.255 0.745 34 H 0.032 0.968 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.407 0.593 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.134 0.866 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.542 1.826 6.234 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.394 4.394 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.353 5.353 17 C 0.334 3.666 18 O -0.393 6.393 19 C -0.167 4.167 20 C -0.015 4.015 21 N -0.197 5.197 22 C -0.034 4.034 23 C -0.242 4.242 24 C 0.084 3.916 25 N -0.211 5.211 26 C -0.113 4.113 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.244 0.756 40 H 0.185 0.815 41 H 0.174 0.826 42 H 0.152 0.848 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.896 1.684 6.390 16.296 hybrid contribution -0.834 0.898 -0.618 1.372 sum -15.730 2.581 5.772 16.954 Atomic orbital electron populations 1.22453 1.00063 0.98948 1.01555 1.20744 0.91631 0.87456 0.98679 1.43872 1.75986 1.08259 1.02251 1.19049 1.08662 1.18310 0.93412 0.91871 1.25143 0.94503 1.01310 0.97755 1.69997 1.07808 1.35909 1.39547 0.86508 0.77109 0.81682 0.82295 1.20738 1.21733 1.20857 1.20500 0.88940 0.99491 0.84208 0.88283 1.22019 1.01127 0.97951 0.99206 1.22138 0.87916 0.96221 0.95697 1.45951 1.10897 1.59496 1.18986 1.17762 0.82275 0.80326 0.86283 1.90790 1.82508 1.48814 1.17196 1.21302 0.95454 1.03863 0.96066 1.23258 0.97893 0.90128 0.90240 1.67726 1.00305 1.14296 1.37396 1.22731 0.94401 0.94481 0.91804 1.22662 1.00776 1.03226 0.97553 1.19041 0.91596 0.91018 0.89965 1.59066 1.44280 1.13953 1.03767 1.22420 0.90498 0.95180 1.03166 1.22399 0.99945 0.92320 0.96399 0.93520 0.94969 0.92879 0.94168 0.94534 0.93517 0.94875 0.95174 0.90327 0.92965 0.92813 0.75575 0.81472 0.82623 0.84795 0.91130 0.95433 0.90492 0.90488 0.91134 0.95470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.87 37.16 0.37 -2.74 16 2 C 0.14 2.85 5.67 -4.04 -0.02 2.82 16 3 N -0.58 -12.92 1.85 -165.66 -0.31 -13.23 16 4 C -0.26 -6.49 9.26 -15.06 -0.14 -6.63 16 5 H 0.06 1.56 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.33 4.85 -17.43 -0.08 0.25 16 7 N -0.89 -23.43 10.60 55.49 0.59 -22.84 16 8 Si 0.89 20.27 29.59 -169.99 -5.03 15.24 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.18 3.73 1.92 -67.93 -0.13 3.60 16 13 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 14 C -0.14 -2.92 9.05 37.16 0.34 -2.59 16 15 C 0.11 2.02 4.34 -4.04 -0.02 2.01 16 16 N -0.70 -12.82 3.94 -61.37 -0.24 -13.06 16 17 C 0.55 9.96 7.53 -12.50 -0.09 9.86 16 18 O -0.52 -10.52 15.16 5.27 0.08 -10.44 16 19 C -0.16 -2.55 5.91 -104.66 -0.62 -3.16 16 20 C 0.14 2.20 10.71 -17.16 -0.18 2.02 16 21 N -0.49 -7.09 10.34 -13.01 -0.13 -7.22 16 22 C 0.12 1.41 11.15 -17.57 -0.20 1.21 16 23 C -0.22 -2.45 8.65 -39.28 -0.34 -2.79 16 24 C 0.19 2.60 4.73 -83.40 -0.39 2.21 16 25 N -0.49 -6.56 3.08 -186.42 -0.57 -7.13 16 26 C 0.03 0.36 9.34 60.06 0.56 0.92 16 27 C 0.04 0.39 9.38 60.06 0.56 0.95 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.00 4.99 -51.93 -0.26 0.74 16 31 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.04 0.71 6.45 -51.93 -0.33 0.38 16 33 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 36 H 0.08 1.82 7.39 -51.93 -0.38 1.43 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.06 7.05 -51.93 -0.37 0.69 16 39 H 0.41 7.58 5.96 -40.82 -0.24 7.34 16 40 H 0.17 2.56 6.42 -52.49 -0.34 2.22 16 41 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.13 1.14 7.16 -52.49 -0.38 0.76 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.24 7.18 -51.92 -0.37 -0.13 16 45 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 46 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.03 0.24 7.41 -51.93 -0.38 -0.15 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -28.53 378.41 -7.80 -36.33 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.49 Total: 8.71 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.39 Total: 7.94 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.67 Total: -63.48 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.53 -7.80 -36.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156428721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.279 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds