Wall clock time and date at job start Tue Mar 31 2020 13:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35044 * 126.39601 * 2 1 4 4 N 1.30499 * 108.70371 * 180.27335 * 3 2 1 5 5 C 1.34130 * 109.25172 * 359.76611 * 4 3 2 6 6 C 1.34665 * 108.02416 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.59435 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46953 * 85.02754 * 7 6 5 9 9 C 1.50703 * 109.46953 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00217 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99784 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99759 * 179.72689 * 11 9 8 13 13 C 1.53003 * 109.47052 * 175.39738 * 12 11 9 14 14 N 1.46496 * 110.01545 * 303.90222 * 13 12 11 15 15 C 1.36937 * 119.99902 * 301.46011 * 14 13 12 16 16 H 1.07999 * 120.00516 * 354.61258 * 15 14 13 17 17 C 1.38820 * 120.00054 * 174.60796 * 15 14 13 18 18 N 1.31615 * 119.99570 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00036 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47261 * 90.00008 * 19 17 15 21 21 H 1.48499 * 109.47054 * 209.99987 * 19 17 15 22 22 H 1.48498 * 109.47401 * 329.99719 * 19 17 15 23 23 C 1.54269 * 110.02979 * 182.45881 * 13 12 11 24 24 C 1.54893 * 104.19247 * 217.10589 * 23 13 12 25 25 C 1.54882 * 102.74816 * 37.94361 * 24 23 13 26 26 C 1.53871 * 110.02941 * 65.29371 * 13 12 11 27 27 H 1.09003 * 109.46788 * 270.11165 * 1 2 3 28 28 H 1.08990 * 109.47773 * 30.11772 * 1 2 3 29 29 H 1.09005 * 109.47014 * 150.12160 * 1 2 3 30 30 H 1.07998 * 125.65250 * 0.02562 * 3 2 1 31 31 H 1.08009 * 125.98763 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47056 * 325.02609 * 7 6 5 33 33 H 1.09002 * 109.47288 * 205.02663 * 7 6 5 34 34 H 1.09005 * 109.47593 * 60.00021 * 8 7 6 35 35 H 1.09002 * 109.47049 * 300.00055 * 8 7 6 36 36 H 0.96996 * 119.99541 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46944 * 295.39776 * 12 11 9 38 38 H 1.09003 * 109.47160 * 55.39632 * 12 11 9 39 39 H 0.96999 * 119.99769 * 121.46681 * 14 13 12 40 40 H 0.97001 * 119.99973 * 179.97438 * 18 17 15 41 41 H 1.08996 * 110.48793 * 335.78148 * 23 13 12 42 42 H 1.08995 * 110.48507 * 98.43022 * 23 13 12 43 43 H 1.08998 * 110.75369 * 279.62840 * 24 23 13 44 44 H 1.08994 * 110.75321 * 156.25978 * 24 23 13 45 45 H 1.09007 * 110.48519 * 203.37540 * 25 24 23 46 46 H 1.09001 * 110.48977 * 80.73375 * 25 24 23 47 47 H 1.08998 * 110.03110 * 238.56785 * 26 13 12 48 48 H 1.09004 * 110.03905 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6904 -0.0059 5 6 3.5460 -0.6504 -0.0047 6 6 2.2773 -1.1017 0.0017 7 6 1.8364 -2.5428 0.0047 8 6 1.8137 -3.0662 1.4422 9 6 1.3722 -4.5071 1.4453 10 8 1.1028 -5.0610 0.4006 11 7 1.2778 -5.1805 2.6090 12 6 0.8429 -6.5794 2.6125 13 6 0.9316 -7.1375 4.0344 14 7 2.2925 -6.9762 4.5523 15 6 3.3487 -7.5431 3.8903 16 1 3.1717 -8.1807 3.0368 17 6 4.6470 -7.2981 4.3162 18 7 4.8627 -6.5213 5.3565 19 14 6.0878 -8.0707 3.4127 20 1 6.5367 -7.1616 2.3277 21 1 7.2055 -8.2957 4.3641 22 1 5.6666 -9.3691 2.8279 23 6 0.5351 -8.6283 4.0426 24 6 -0.2404 -8.8077 5.3713 25 6 -1.0403 -7.4859 5.4814 26 6 -0.0701 -6.4111 4.9491 27 1 -0.3633 0.0020 1.0277 28 1 -0.3634 0.8888 -0.5156 29 1 -0.3633 -0.8911 -0.5120 30 1 1.9334 2.1144 0.0004 31 1 4.4369 -1.2610 -0.0082 32 1 2.5325 -3.1370 -0.5873 33 1 0.8376 -2.6182 -0.4252 34 1 1.1175 -2.4720 2.0343 35 1 2.8125 -2.9908 1.8721 36 1 1.4936 -4.7375 3.4445 37 1 -0.1873 -6.6404 2.2619 38 1 1.4863 -7.1616 1.9529 39 1 2.4453 -6.4680 5.3642 40 1 5.7699 -6.3504 5.6544 41 1 -0.1072 -8.8569 3.1922 42 1 1.4237 -9.2594 4.0313 43 1 0.4484 -8.9133 6.2094 44 1 -0.9137 -9.6629 5.3131 45 1 -1.3014 -7.2834 6.5201 46 1 -1.9370 -7.5300 4.8632 47 1 0.4562 -5.9394 5.7789 48 1 -0.6198 -5.6613 4.3801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:49 Heat of formation + Delta-G solvation = 20.059452 kcal Electronic energy + Delta-G solvation = -27332.419417 eV Core-core repulsion = 23615.924902 eV Total energy + Delta-G solvation = -3716.494515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16031 -39.47675 -38.18472 -34.36361 -34.07766 -33.53469 -33.30555 -30.69777 -29.11289 -28.29225 -27.66186 -27.14669 -25.07254 -23.76659 -22.93546 -21.49867 -20.53715 -19.89476 -19.60245 -18.58335 -17.28784 -17.00078 -16.60172 -15.83792 -15.76016 -15.46084 -15.06329 -14.71285 -14.48225 -14.15060 -13.81380 -13.41101 -13.35159 -13.33868 -13.18023 -12.98476 -12.70286 -12.58346 -12.48018 -12.01595 -11.86480 -11.46804 -11.13828 -11.08857 -10.78667 -10.76392 -10.66095 -10.52980 -10.26203 -10.17089 -9.99413 -9.87399 -9.68755 -9.66137 -9.46595 -8.92350 -8.42659 -8.37731 -7.02704 -5.82000 -3.11081 1.92916 2.64858 3.07522 3.11882 3.42250 3.48769 3.49387 3.73335 4.46642 4.55546 4.61081 4.63916 4.81718 4.95174 5.03086 5.07398 5.08972 5.11612 5.20150 5.30408 5.45317 5.53761 5.57208 5.66261 5.70836 5.76310 5.85208 5.91097 5.92067 6.05455 6.06559 6.14823 6.22774 6.27863 6.34281 6.41289 6.53575 6.58733 6.70145 6.74414 6.80039 6.98713 7.08292 7.09632 7.69720 8.01014 8.06330 8.36551 8.70713 9.48554 10.02002 10.37282 11.40006 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.003544 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.984130 B = 7897.845659 C = 9574.191407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.461 5.461 3 C 0.172 3.828 4 N -0.494 5.494 5 C -0.024 4.024 6 C -0.019 4.019 7 C -0.025 4.025 8 C -0.134 4.134 9 C 0.510 3.490 10 O -0.560 6.560 11 N -0.699 5.699 12 C 0.120 3.880 13 C 0.189 3.811 14 N -0.711 5.711 15 C -0.234 4.234 16 H 0.069 0.931 17 C -0.007 4.007 18 N -0.931 5.931 19 Si 0.901 3.099 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.126 4.126 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.203 0.797 31 H 0.170 0.830 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.402 0.598 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 10.038 -5.330 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.109 4.109 4 N -0.211 5.211 5 C -0.172 4.172 6 C -0.133 4.133 7 C -0.064 4.064 8 C -0.175 4.175 9 C 0.296 3.704 10 O -0.440 6.440 11 N -0.348 5.348 12 C -0.006 4.006 13 C 0.097 3.903 14 N -0.352 5.352 15 C -0.365 4.365 16 H 0.087 0.913 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.732 3.268 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.164 4.164 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.219 0.781 31 H 0.187 0.813 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.237 0.763 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.366 10.080 -6.161 17.838 hybrid contribution 0.379 -0.479 0.267 0.667 sum -12.987 9.601 -5.893 17.192 Atomic orbital electron populations 1.22045 0.76843 1.04669 1.03709 1.45313 1.07497 1.06800 1.54821 1.24888 0.85759 0.93334 1.06968 1.70273 1.19377 1.12168 1.19312 1.22146 0.95985 0.90973 1.08080 1.21345 0.91267 0.89808 1.10862 1.19730 1.02991 0.87250 0.96423 1.21617 1.04206 0.93479 0.98178 1.20441 0.77582 0.88469 0.83911 1.90651 1.51165 1.70485 1.31675 1.45741 1.67030 1.13161 1.08843 1.21869 0.97617 0.81531 0.99623 1.20454 0.86669 0.92842 0.90354 1.42544 0.99502 1.63538 1.29635 1.19076 0.85263 1.22518 1.09599 0.91298 1.24674 0.97199 1.00115 0.98358 1.69642 1.20092 1.41313 1.26866 0.86292 0.82815 0.78873 0.78839 1.21708 1.21875 1.20802 1.22830 0.99948 0.98457 0.96002 1.22384 0.98082 0.96199 0.98804 1.22302 0.97752 0.95747 1.00035 1.22429 0.96879 0.97759 0.99290 0.90446 0.89503 0.89473 0.78091 0.81262 0.88651 0.90723 0.89741 0.88172 0.76311 0.93310 0.91503 0.78140 0.93554 0.92959 0.90281 0.91394 0.92735 0.92379 0.92328 0.91312 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.00 59.84 0.66 1.08 16 2 N -0.46 -4.63 3.15 -121.37 -0.38 -5.02 16 3 C 0.17 1.85 12.56 -90.37 -1.14 0.71 16 4 N -0.49 -6.99 11.25 -14.66 -0.16 -7.15 16 5 C -0.02 -0.33 11.79 -17.81 -0.21 -0.54 16 6 C -0.02 -0.23 6.21 -81.60 -0.51 -0.73 16 7 C -0.02 -0.30 4.84 -27.88 -0.13 -0.44 16 8 C -0.13 -1.73 5.68 -27.88 -0.16 -1.89 16 9 C 0.51 8.45 7.83 -10.98 -0.09 8.36 16 10 O -0.56 -10.98 15.98 5.56 0.09 -10.89 16 11 N -0.70 -11.73 5.10 -60.29 -0.31 -12.04 16 12 C 0.12 2.14 3.99 -4.04 -0.02 2.12 16 13 C 0.19 3.32 0.68 -130.70 -0.09 3.23 16 14 N -0.71 -15.64 4.76 -46.20 -0.22 -15.86 16 15 C -0.23 -5.95 8.39 -15.06 -0.13 -6.08 16 16 H 0.07 1.78 7.23 -52.49 -0.38 1.40 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 19 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.13 -2.23 5.94 -25.07 -0.15 -2.38 16 24 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 25 C -0.12 -1.58 6.83 -25.08 -0.17 -1.75 16 26 C -0.13 -1.84 5.80 -25.61 -0.15 -1.99 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.51 7.11 -51.93 -0.37 0.14 16 30 H 0.20 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.17 2.17 8.06 -52.48 -0.42 1.74 16 32 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.07 0.87 7.04 -51.93 -0.37 0.50 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.40 6.52 7.99 -40.82 -0.33 6.19 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.39 7.49 -51.93 -0.39 1.01 16 39 H 0.38 9.09 7.28 -40.82 -0.30 8.79 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 42 H 0.08 1.54 7.12 -51.93 -0.37 1.17 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 48 H 0.06 0.81 7.55 -51.93 -0.39 0.41 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -32.33 388.04 -9.86 -42.20 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -7.89 Total: 14.12 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.54 Total: -2.47 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -0.35 Total: -65.83 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.33 -9.86 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.254 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds