Wall clock time and date at job start Tue Mar 31 2020 13:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35044 * 126.39601 * 2 1 4 4 N 1.30499 * 108.70371 * 180.27335 * 3 2 1 5 5 C 1.34130 * 109.25172 * 359.76611 * 4 3 2 6 6 C 1.34665 * 108.02416 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.59435 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46953 * 85.02754 * 7 6 5 9 9 C 1.50703 * 109.46953 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00217 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99784 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99759 * 179.72689 * 11 9 8 13 13 C 1.53003 * 109.47052 * 175.39738 * 12 11 9 14 14 N 1.46496 * 110.01545 * 303.90222 * 13 12 11 15 15 C 1.36937 * 119.99902 * 301.46011 * 14 13 12 16 16 H 1.07999 * 120.00516 * 354.61258 * 15 14 13 17 17 C 1.38820 * 120.00054 * 174.60796 * 15 14 13 18 18 N 1.31615 * 119.99570 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00036 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47261 * 90.00008 * 19 17 15 21 21 H 1.48499 * 109.47054 * 209.99987 * 19 17 15 22 22 H 1.48498 * 109.47401 * 329.99719 * 19 17 15 23 23 C 1.54269 * 110.02979 * 182.45881 * 13 12 11 24 24 C 1.54893 * 104.19247 * 217.10589 * 23 13 12 25 25 C 1.54882 * 102.74816 * 37.94361 * 24 23 13 26 26 C 1.53871 * 110.02941 * 65.29371 * 13 12 11 27 27 H 1.09003 * 109.46788 * 270.11165 * 1 2 3 28 28 H 1.08990 * 109.47773 * 30.11772 * 1 2 3 29 29 H 1.09005 * 109.47014 * 150.12160 * 1 2 3 30 30 H 1.07998 * 125.65250 * 0.02562 * 3 2 1 31 31 H 1.08009 * 125.98763 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47056 * 325.02609 * 7 6 5 33 33 H 1.09002 * 109.47288 * 205.02663 * 7 6 5 34 34 H 1.09005 * 109.47593 * 60.00021 * 8 7 6 35 35 H 1.09002 * 109.47049 * 300.00055 * 8 7 6 36 36 H 0.96996 * 119.99541 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46944 * 295.39776 * 12 11 9 38 38 H 1.09003 * 109.47160 * 55.39632 * 12 11 9 39 39 H 0.96999 * 119.99769 * 121.46681 * 14 13 12 40 40 H 0.97001 * 119.99973 * 179.97438 * 18 17 15 41 41 H 1.08996 * 110.48793 * 335.78148 * 23 13 12 42 42 H 1.08995 * 110.48507 * 98.43022 * 23 13 12 43 43 H 1.08998 * 110.75369 * 279.62840 * 24 23 13 44 44 H 1.08994 * 110.75321 * 156.25978 * 24 23 13 45 45 H 1.09007 * 110.48519 * 203.37540 * 25 24 23 46 46 H 1.09001 * 110.48977 * 80.73375 * 25 24 23 47 47 H 1.08998 * 110.03110 * 238.56785 * 26 13 12 48 48 H 1.09004 * 110.03905 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6904 -0.0059 5 6 3.5460 -0.6504 -0.0047 6 6 2.2773 -1.1017 0.0017 7 6 1.8364 -2.5428 0.0047 8 6 1.8137 -3.0662 1.4422 9 6 1.3722 -4.5071 1.4453 10 8 1.1028 -5.0610 0.4006 11 7 1.2778 -5.1805 2.6090 12 6 0.8429 -6.5794 2.6125 13 6 0.9316 -7.1375 4.0344 14 7 2.2925 -6.9762 4.5523 15 6 3.3487 -7.5431 3.8903 16 1 3.1717 -8.1807 3.0368 17 6 4.6470 -7.2981 4.3162 18 7 4.8627 -6.5213 5.3565 19 14 6.0878 -8.0707 3.4127 20 1 6.5367 -7.1616 2.3277 21 1 7.2055 -8.2957 4.3641 22 1 5.6666 -9.3691 2.8279 23 6 0.5351 -8.6283 4.0426 24 6 -0.2404 -8.8077 5.3713 25 6 -1.0403 -7.4859 5.4814 26 6 -0.0701 -6.4111 4.9491 27 1 -0.3633 0.0020 1.0277 28 1 -0.3634 0.8888 -0.5156 29 1 -0.3633 -0.8911 -0.5120 30 1 1.9334 2.1144 0.0004 31 1 4.4369 -1.2610 -0.0082 32 1 2.5325 -3.1370 -0.5873 33 1 0.8376 -2.6182 -0.4252 34 1 1.1175 -2.4720 2.0343 35 1 2.8125 -2.9908 1.8721 36 1 1.4936 -4.7375 3.4445 37 1 -0.1873 -6.6404 2.2619 38 1 1.4863 -7.1616 1.9529 39 1 2.4453 -6.4680 5.3642 40 1 5.7699 -6.3504 5.6544 41 1 -0.1072 -8.8569 3.1922 42 1 1.4237 -9.2594 4.0313 43 1 0.4484 -8.9133 6.2094 44 1 -0.9137 -9.6629 5.3131 45 1 -1.3014 -7.2834 6.5201 46 1 -1.9370 -7.5300 4.8632 47 1 0.4562 -5.9394 5.7789 48 1 -0.6198 -5.6613 4.3801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753678287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:48 Heat of formation + Delta-G solvation = 0.412289 kcal Electronic energy + Delta-G solvation = -27333.271382 eV Core-core repulsion = 23615.924902 eV Total energy + Delta-G solvation = -3717.346480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.02169 -40.86279 -39.56059 -35.56386 -35.21405 -35.05603 -34.48367 -32.41623 -30.30157 -29.54353 -29.05543 -27.75954 -26.45516 -25.36204 -24.29048 -22.35983 -21.78694 -20.98734 -20.69581 -20.03726 -18.92037 -18.28956 -17.69591 -17.20389 -16.77800 -16.62603 -16.32835 -16.11599 -15.76373 -15.44731 -15.17674 -14.96679 -14.54420 -14.41241 -14.04557 -13.91911 -13.85963 -13.70085 -13.37654 -13.35357 -13.20619 -12.96422 -12.93032 -12.44115 -12.34192 -12.16169 -12.14889 -11.87068 -11.71770 -11.57789 -11.36392 -11.31444 -10.98307 -10.91966 -10.76900 -10.47307 -9.86951 -9.31584 -8.93805 -7.91014 -5.15869 1.06062 1.43419 1.46691 1.51490 1.73206 1.93330 2.17791 2.44743 2.57588 3.40735 3.62808 3.78381 3.87184 3.89976 3.95790 3.96097 3.99536 4.03988 4.16567 4.23375 4.43666 4.46697 4.49247 4.56968 4.60625 4.67890 4.71477 4.73407 4.79279 4.88654 4.94002 4.99770 5.05961 5.07235 5.15411 5.19973 5.28379 5.41829 5.44161 5.51128 5.59707 5.63331 5.70606 5.77048 6.33112 6.34186 6.70434 7.12781 7.35705 7.40740 8.14962 8.38721 9.31348 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.003544 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.984130 B = 7897.845659 C = 9574.191407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.457 5.457 3 C 0.182 3.818 4 N -0.538 5.538 5 C -0.053 4.053 6 C -0.020 4.020 7 C -0.015 4.015 8 C -0.122 4.122 9 C 0.507 3.493 10 O -0.592 6.592 11 N -0.699 5.699 12 C 0.127 3.873 13 C 0.184 3.816 14 N -0.714 5.714 15 C -0.212 4.212 16 H 0.062 0.938 17 C -0.062 4.062 18 N -0.960 5.960 19 Si 0.946 3.054 20 H -0.296 1.296 21 H -0.297 1.297 22 H -0.277 1.277 23 C -0.133 4.133 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.119 4.119 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.242 0.758 31 H 0.162 0.838 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.406 0.594 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.376 0.624 40 H 0.247 0.753 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.932 11.178 -5.318 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.140 5.140 3 C -0.100 4.100 4 N -0.257 5.257 5 C -0.201 4.201 6 C -0.136 4.136 7 C -0.054 4.054 8 C -0.162 4.162 9 C 0.295 3.705 10 O -0.474 6.474 11 N -0.347 5.347 12 C 0.000 4.000 13 C 0.093 3.907 14 N -0.354 5.354 15 C -0.345 4.345 16 H 0.080 0.920 17 C -0.255 4.255 18 N -0.611 5.611 19 Si 0.778 3.222 20 H -0.224 1.224 21 H -0.224 1.224 22 H -0.202 1.202 23 C -0.173 4.173 24 C -0.151 4.151 25 C -0.149 4.149 26 C -0.157 4.157 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.107 0.893 30 H 0.258 0.742 31 H 0.180 0.820 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.209 0.791 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.509 11.201 -6.160 20.879 hybrid contribution 1.224 -0.842 0.205 1.500 sum -15.284 10.358 -5.955 19.400 Atomic orbital electron populations 1.22392 0.74137 1.06259 1.05115 1.45530 1.09048 1.05771 1.53611 1.25645 0.84950 0.94894 1.04517 1.70225 1.21724 1.12306 1.21408 1.22239 0.96737 0.91426 1.09648 1.21173 0.91170 0.90209 1.11037 1.19569 1.02971 0.87153 0.95666 1.21554 1.04268 0.91258 0.99136 1.21037 0.76639 0.89673 0.83151 1.90635 1.52570 1.71491 1.32679 1.45774 1.66960 1.12753 1.09257 1.21736 0.97765 0.81721 0.98758 1.20728 0.85196 0.93962 0.90777 1.42625 1.00728 1.62951 1.29141 1.19209 0.86158 1.20721 1.08388 0.92041 1.25176 0.99063 1.01695 0.99576 1.69744 1.19686 1.43277 1.28381 0.85543 0.80775 0.78287 0.77622 1.22427 1.22377 1.20240 1.22792 0.99305 0.96921 0.98310 1.22355 0.98026 0.98333 0.96411 1.22294 0.97628 0.93563 1.01459 1.22377 0.96397 0.98420 0.98529 0.89072 0.86604 0.89330 0.74201 0.82046 0.90431 0.89787 0.86940 0.88881 0.75849 0.91438 0.95163 0.79096 0.94360 0.91203 0.93643 0.93370 0.90444 0.90786 0.90086 0.92037 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 11.00 127.77 1.41 1.93 16 2 N -0.46 -8.13 3.15 -537.90 -1.70 -9.83 16 3 C 0.18 3.51 12.56 180.26 2.26 5.78 16 4 N -0.54 -15.02 11.25 -200.31 -2.25 -17.28 16 5 C -0.05 -1.49 11.79 83.52 0.98 -0.51 16 6 C -0.02 -0.48 6.21 40.95 0.25 -0.22 16 7 C -0.01 -0.34 4.84 29.85 0.14 -0.20 16 8 C -0.12 -3.02 5.68 29.85 0.17 -2.85 16 9 C 0.51 16.48 7.83 87.66 0.69 17.17 16 10 O -0.59 -23.08 15.98 -3.02 -0.05 -23.13 16 11 N -0.70 -22.91 5.10 -463.05 -2.36 -25.27 16 12 C 0.13 4.42 3.99 86.38 0.34 4.77 16 13 C 0.18 6.29 0.68 4.33 0.00 6.30 16 14 N -0.71 -31.65 4.76 -300.07 -1.43 -33.07 16 15 C -0.21 -11.02 8.39 84.04 0.70 -10.31 16 16 H 0.06 3.25 7.23 -2.91 -0.02 3.23 16 17 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 18 N -0.96 -55.76 13.06 21.65 0.28 -55.48 16 19 Si 0.95 46.34 29.55 68.60 2.03 48.37 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 21 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 C -0.13 -4.36 5.94 31.67 0.19 -4.17 16 24 C -0.11 -3.07 6.91 31.88 0.22 -2.85 16 25 C -0.11 -2.53 6.83 31.67 0.22 -2.31 16 26 C -0.12 -3.20 5.80 31.32 0.18 -3.02 16 27 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.76 7.11 -2.38 -0.02 0.74 16 30 H 0.24 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 33 H 0.08 1.83 7.04 -2.39 -0.02 1.81 16 34 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 36 H 0.41 12.78 7.99 -92.71 -0.74 12.04 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 1.27 7.49 -2.39 -0.02 1.26 16 39 H 0.38 17.94 7.28 -92.71 -0.67 17.27 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.07 2.02 7.85 -2.39 -0.02 2.01 16 42 H 0.04 1.78 7.12 -2.39 -0.02 1.76 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.06 1.77 7.44 -2.39 -0.02 1.75 16 48 H 0.08 1.84 7.55 -2.39 -0.02 1.82 16 Total: -1.00 -72.07 388.04 2.31 -69.77 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.45 Total: 39.39 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 8.24 Total: 6.52 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -7.46 Total: -140.92 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.07 2.31 -69.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.178 kcal (2) G-P(sol) polarization free energy of solvation -72.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds