Wall clock time and date at job start Tue Mar 31 2020 12:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47028 * 2 1 4 4 N 1.39929 * 125.76014 * 90.02591 * 3 2 1 5 5 C 1.30444 * 108.90050 * 180.02562 * 4 3 2 6 6 C 1.41289 * 108.02348 * 359.97438 * 5 4 3 7 7 C 1.47424 * 126.41486 * 179.97438 * 6 5 4 8 8 O 1.21601 * 120.00106 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00327 * 0.02724 * 7 6 5 10 10 C 1.46493 * 120.00272 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.01683 * 33.60800 * 10 9 7 12 12 C 1.54261 * 110.07453 * 272.19066 * 10 9 7 13 13 C 1.54895 * 104.19834 * 264.30541 * 12 10 9 14 14 C 1.54890 * 102.74327 * 322.05332 * 13 12 10 15 15 H 1.08996 * 110.60412 * 279.20629 * 14 13 12 16 16 C 1.53006 * 110.48342 * 156.61881 * 14 13 12 17 17 N 1.46498 * 109.46687 * 70.22607 * 16 14 13 18 18 C 1.36943 * 119.99784 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00153 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00041 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00000 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99952 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46966 * 89.99783 * 22 20 18 24 24 H 1.48500 * 109.46844 * 209.99966 * 22 20 18 25 25 H 1.48500 * 109.46950 * 329.99391 * 22 20 18 26 26 C 1.53875 * 110.03317 * 154.99971 * 10 9 7 27 27 C 1.34265 * 125.74874 * 270.31253 * 3 2 1 28 28 C 1.50700 * 126.29503 * 359.97438 * 27 3 2 29 29 H 1.09006 * 109.47190 * 299.99878 * 1 2 3 30 30 H 1.09001 * 109.47352 * 60.00258 * 1 2 3 31 31 H 1.08996 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47168 * 239.99360 * 2 1 3 33 33 H 1.09007 * 109.46803 * 119.99339 * 2 1 3 34 34 H 1.08001 * 125.98901 * 179.97438 * 5 4 3 35 35 H 0.97003 * 119.99630 * 359.97438 * 9 7 6 36 36 H 1.08999 * 110.48799 * 22.97948 * 12 10 9 37 37 H 1.09002 * 110.48926 * 145.49217 * 12 10 9 38 38 H 1.08997 * 110.75359 * 203.74582 * 13 12 10 39 39 H 1.08992 * 110.75480 * 80.36833 * 13 12 10 40 40 H 1.08992 * 109.47046 * 190.22526 * 16 14 13 41 41 H 1.08997 * 109.47395 * 310.23066 * 16 14 13 42 42 H 0.97004 * 120.00552 * 359.97438 * 17 16 14 43 43 H 0.97002 * 120.00121 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.03284 * 0.05029 * 26 10 9 45 45 H 1.09001 * 110.07432 * 238.64266 * 26 10 9 46 46 H 1.08997 * 109.46909 * 270.20271 * 28 27 3 47 47 H 1.08999 * 109.47090 * 30.20152 * 28 27 3 48 48 H 1.08997 * 109.46921 * 150.20325 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2914 2.1520 1.1355 5 6 2.7068 3.3292 0.7572 6 6 2.7160 3.3564 -0.6554 7 6 3.1160 4.4920 -1.5063 8 8 3.0782 4.3873 -2.7172 9 7 3.5235 5.6462 -0.9421 10 6 3.9215 6.7743 -1.7876 11 1 3.3243 6.7862 -2.6994 12 6 5.4200 6.6700 -2.1388 13 6 6.1203 7.5637 -1.0852 14 6 5.1355 8.7496 -0.9343 15 1 5.2723 9.4671 -1.7434 16 6 5.3231 9.4321 0.4222 17 7 6.6031 10.1445 0.4374 18 6 6.9890 10.8351 1.5552 19 1 6.3500 10.8542 2.4256 20 6 8.2021 11.5097 1.5699 21 7 8.5733 12.1730 2.6444 22 14 9.3079 11.4760 0.0647 23 1 8.9681 12.6157 -0.8247 24 1 10.7264 11.5858 0.4900 25 1 9.1082 10.1998 -0.6677 26 6 3.7406 8.0966 -1.0218 27 6 2.2742 2.1228 -1.0897 28 6 2.1125 1.6872 -2.5232 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.9935 4.1409 1.4094 35 1 3.5533 5.7298 0.0238 36 1 5.7614 5.6385 -2.0516 37 1 5.6033 7.0477 -3.1448 38 1 7.0869 7.9086 -1.4523 39 1 6.2320 7.0317 -0.1405 40 1 4.5112 10.1402 0.5880 41 1 5.3164 8.6802 1.2113 42 1 7.1773 10.1271 -0.3442 43 1 9.4208 12.6447 2.6546 44 1 3.3575 7.8989 -0.0206 45 1 3.0553 8.7506 -1.5611 46 1 3.0413 1.2367 -2.8730 47 1 1.3060 0.9571 -2.5924 48 1 1.8731 2.5526 -3.1411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755747713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:42 Heat of formation + Delta-G solvation = 34.149786 kcal Electronic energy + Delta-G solvation = -26615.025542 eV Core-core repulsion = 22899.142029 eV Total energy + Delta-G solvation = -3715.883513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79080 -39.71489 -37.88992 -35.12414 -34.87512 -33.27896 -32.45837 -31.31858 -30.10563 -28.99983 -28.27082 -27.21898 -24.66117 -24.18745 -22.86893 -21.82817 -20.94420 -20.24940 -19.75423 -19.50383 -17.80379 -17.47199 -16.32258 -16.25189 -15.85314 -15.38278 -15.21431 -14.56384 -14.42120 -14.27790 -14.19105 -13.85762 -13.46009 -13.39006 -13.31645 -13.14543 -12.90425 -12.67485 -12.63784 -12.40049 -12.15277 -11.92668 -11.81435 -11.59263 -11.28309 -11.08579 -10.89005 -10.84302 -10.48255 -10.31549 -10.31065 -10.02586 -9.85039 -9.74691 -9.55714 -9.13379 -8.85740 -8.77948 -7.18678 -5.73946 -3.08700 1.23844 1.93266 1.95725 3.23554 3.36243 3.39882 3.42820 3.47601 4.00811 4.19668 4.39452 4.47808 4.61858 4.62115 4.65676 4.69301 4.71936 4.92122 5.00223 5.03037 5.14419 5.18267 5.25249 5.39203 5.44800 5.53517 5.56511 5.58462 5.61592 5.69378 5.73862 5.81128 5.89707 5.96630 6.05459 6.10908 6.13816 6.26977 6.42594 6.49047 6.51843 6.63086 6.74370 6.85712 7.24592 7.54744 8.03023 8.26109 8.45465 9.25268 9.97847 10.18164 11.44615 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002270 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.938318 B =12330.286687 C =12880.799264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.361 5.361 4 N -0.297 5.297 5 C 0.084 3.916 6 C -0.298 4.298 7 C 0.596 3.404 8 O -0.553 6.553 9 N -0.717 5.717 10 C 0.144 3.856 11 H 0.089 0.911 12 C -0.133 4.133 13 C -0.115 4.115 14 C -0.102 4.102 15 H 0.076 0.924 16 C 0.165 3.835 17 N -0.755 5.755 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.122 4.122 27 C 0.157 3.843 28 C -0.100 4.100 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.190 0.810 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.026 0.974 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 -25.936 -9.934 32.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.141 5.141 4 N -0.115 5.115 5 C -0.104 4.104 6 C -0.313 4.313 7 C 0.384 3.616 8 O -0.432 6.432 9 N -0.367 5.367 10 C 0.040 3.960 11 H 0.107 0.893 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.121 4.121 15 H 0.094 0.906 16 C 0.038 3.962 17 N -0.401 5.401 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.584 5.584 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.160 4.160 27 C 0.025 3.975 28 C -0.158 4.158 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.207 0.793 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.428 -26.812 -9.539 33.370 hybrid contribution 1.162 0.653 -0.965 1.646 sum -16.266 -26.158 -10.504 32.545 Atomic orbital electron populations 1.22202 0.93886 1.03381 1.03493 1.21785 0.95550 0.77528 1.04868 1.48592 1.49993 1.12180 1.03377 1.77191 1.22427 1.04463 1.07463 1.24065 0.96784 0.95645 0.93879 1.20028 1.21227 0.96521 0.93538 1.17183 0.76022 0.81505 0.86879 1.90713 1.55578 1.82785 1.14149 1.45971 1.67502 1.13040 1.10236 1.21601 0.95711 0.84695 0.93985 0.89340 1.22786 0.94536 1.00340 0.99484 1.22534 0.98338 0.95597 0.98751 1.22232 0.93563 0.96926 0.99426 0.90586 1.20669 0.88726 0.93805 0.92996 1.42709 1.19646 1.61845 1.15882 1.19070 1.02506 1.22770 0.92844 0.89295 1.24680 0.97756 0.99910 0.97001 1.69703 1.23186 1.37767 1.27717 0.86539 0.80714 0.77722 0.83528 1.21123 1.21806 1.20277 1.22440 0.98005 0.94884 1.00708 1.21523 0.94292 0.90606 0.91097 1.20694 1.02795 1.03811 0.88493 0.91376 0.91855 0.90179 0.88607 0.88207 0.79301 0.76639 0.91572 0.91072 0.91568 0.91203 0.95671 0.95608 0.80669 0.93122 0.90728 0.90780 0.89582 0.91240 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.24 37.16 0.38 -0.34 16 2 C 0.12 0.63 6.75 -4.04 -0.03 0.60 16 3 N -0.36 -3.24 3.58 -56.60 -0.20 -3.44 16 4 N -0.30 -3.23 12.50 30.86 0.39 -2.84 16 5 C 0.08 0.84 11.50 -16.98 -0.20 0.65 16 6 C -0.30 -3.27 6.13 -105.07 -0.64 -3.92 16 7 C 0.60 7.30 7.81 -12.52 -0.10 7.20 16 8 O -0.55 -8.14 14.49 5.28 0.08 -8.06 16 9 N -0.72 -7.69 5.02 -53.80 -0.27 -7.97 16 10 C 0.14 1.67 3.24 -66.82 -0.22 1.45 16 11 H 0.09 1.09 7.56 -51.93 -0.39 0.70 16 12 C -0.13 -1.65 6.54 -25.07 -0.16 -1.81 16 13 C -0.11 -1.63 6.19 -24.73 -0.15 -1.78 16 14 C -0.10 -1.49 2.89 -88.96 -0.26 -1.75 16 15 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 16 C 0.17 3.09 5.54 -4.04 -0.02 3.07 16 17 N -0.76 -17.89 5.30 -59.91 -0.32 -18.21 16 18 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 21 N -0.94 -29.64 13.97 55.49 0.78 -28.87 16 22 Si 0.88 22.32 27.74 -169.99 -4.71 17.61 16 23 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 26 C -0.12 -1.40 6.14 -25.61 -0.16 -1.56 16 27 C 0.16 1.52 7.01 -81.60 -0.57 0.95 16 28 C -0.10 -0.73 9.34 36.01 0.34 -0.39 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.28 7.64 -51.93 -0.40 -0.12 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.19 1.35 7.50 -52.49 -0.39 0.96 16 35 H 0.40 3.55 7.27 -40.82 -0.30 3.25 16 36 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.03 0.49 8.02 -51.93 -0.42 0.07 16 42 H 0.36 8.37 5.50 -40.82 -0.22 8.14 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.33 7.71 -51.93 -0.40 -0.08 16 48 H 0.11 0.98 6.50 -51.93 -0.34 0.65 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -35.55 387.43 -8.36 -43.91 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.89 Total: 6.75 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.04 Total: -4.71 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.37 Total: -61.33 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.55 -8.36 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755747713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.057 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds