Wall clock time and date at job start Tue Mar 31 2020 12:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99917 * 2 1 4 4 H 1.08991 * 109.47096 * 36.22822 * 3 2 1 5 5 C 1.50700 * 109.46911 * 156.22682 * 3 2 1 6 6 O 1.21283 * 120.00326 * 25.97015 * 5 3 2 7 7 N 1.34777 * 120.00235 * 205.97350 * 5 3 2 8 8 C 1.46934 * 120.62604 * 359.71788 * 7 5 3 9 9 C 1.52759 * 109.00554 * 233.58216 * 8 7 5 10 10 C 1.53033 * 109.38767 * 305.59072 * 9 8 7 11 11 C 1.52996 * 109.46184 * 181.26079 * 10 9 8 12 12 C 1.50700 * 109.47136 * 64.93246 * 11 10 9 13 13 H 1.07999 * 120.00048 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00343 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00041 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99657 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47595 * 90.00045 * 16 14 12 18 18 H 1.48504 * 109.46913 * 210.00443 * 16 14 12 19 19 H 1.48501 * 109.47277 * 329.99894 * 16 14 12 20 20 C 1.53043 * 109.53817 * 61.23782 * 10 9 8 21 21 C 1.46921 * 120.63552 * 179.97438 * 7 5 3 22 22 C 1.50698 * 109.47245 * 276.22606 * 3 2 1 23 23 C 1.39865 * 126.03994 * 314.03119 * 22 3 2 24 24 N 1.30837 * 108.20487 * 179.97438 * 23 22 3 25 25 N 1.40083 * 108.20153 * 0.02562 * 24 23 22 26 26 C 1.46505 * 126.03400 * 179.74136 * 25 24 23 27 27 C 1.34943 * 107.92743 * 359.97438 * 25 24 23 28 28 H 1.09005 * 109.46588 * 295.33321 * 1 2 3 29 29 H 1.09000 * 109.47143 * 55.33497 * 1 2 3 30 30 H 1.08997 * 109.46752 * 175.33462 * 1 2 3 31 31 H 1.00899 * 111.00451 * 123.95544 * 2 1 3 32 32 H 1.08998 * 109.58694 * 353.42452 * 8 7 5 33 33 H 1.08999 * 109.58066 * 113.84293 * 8 7 5 34 34 H 1.09007 * 109.55846 * 185.55094 * 9 8 7 35 35 H 1.08997 * 109.35780 * 65.50675 * 9 8 7 36 36 H 1.09005 * 109.46131 * 301.22335 * 10 9 8 37 37 H 1.08998 * 109.47097 * 184.92720 * 11 10 9 38 38 H 1.08993 * 109.47217 * 304.93415 * 11 10 9 39 39 H 0.96997 * 120.00133 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.49619 * 178.68166 * 20 10 9 41 41 H 1.09002 * 109.49173 * 58.59106 * 20 10 9 42 42 H 1.08996 * 109.59180 * 246.15500 * 21 7 5 43 43 H 1.09005 * 109.58554 * 6.44590 * 21 7 5 44 44 H 1.07999 * 125.89974 * 359.95866 * 23 22 3 45 45 H 1.09005 * 109.47149 * 90.02398 * 26 25 24 46 46 H 1.09004 * 109.46611 * 210.02006 * 26 25 24 47 47 H 1.08994 * 109.47339 * 330.01796 * 26 25 24 48 48 H 1.08007 * 126.12848 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3518 2.0077 0.6073 5 6 3.3894 1.3744 0.5728 6 8 4.0733 0.3748 0.5092 7 7 3.8761 2.4879 1.1557 8 6 3.0618 3.7084 1.2349 9 6 3.8524 4.8732 0.6418 10 6 5.2089 4.9756 1.3428 11 6 5.9896 6.1611 0.7718 12 6 5.2700 7.4430 1.1034 13 1 4.3478 7.4149 1.6649 14 6 5.7883 8.6517 0.6892 15 7 5.1600 9.7702 0.9781 16 14 7.3828 8.7002 -0.2825 17 1 7.0810 8.6146 -1.7340 18 1 8.0965 9.9714 0.0005 19 1 8.2390 7.5533 0.1135 20 6 6.0013 3.6862 1.1152 21 6 5.2328 2.5061 1.7191 22 6 2.0316 1.8957 -1.4124 23 6 2.5139 1.2106 -2.5323 24 7 2.3794 1.9878 -3.5762 25 7 1.8069 3.1941 -3.1527 26 6 1.4906 4.3437 -4.0041 27 6 1.6031 3.1123 -1.8213 28 1 -0.3633 0.4398 0.9289 29 1 -0.3633 0.5845 -0.8452 30 1 -0.3633 -1.0243 -0.0836 31 1 1.8307 -0.5261 0.7813 32 1 2.1396 3.5696 0.6708 33 1 2.8262 3.9234 2.2771 34 1 3.2981 5.8008 0.7847 35 1 4.0055 4.7008 -0.4235 36 1 5.0551 5.1233 2.4118 37 1 6.9885 6.1821 1.2075 38 1 6.0673 6.0576 -0.3104 39 1 5.5248 10.6206 0.6870 40 1 6.9765 3.7690 1.5950 41 1 6.1342 3.5250 0.0454 42 1 5.1776 2.6213 2.8016 43 1 5.7418 1.5732 1.4764 44 1 2.9263 0.2124 -2.5350 45 1 0.4745 4.2443 -4.3861 46 1 1.5713 5.2609 -3.4206 47 1 2.1906 4.3813 -4.8387 48 1 1.1745 3.8802 -1.1943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572485521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:58 Heat of formation + Delta-G solvation = 45.938368 kcal Electronic energy + Delta-G solvation = -28312.609840 eV Core-core repulsion = 24597.237518 eV Total energy + Delta-G solvation = -3715.372321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40593 -39.99661 -37.63500 -35.87974 -34.11254 -33.15396 -32.26141 -31.31457 -30.40189 -28.82744 -27.95655 -26.16351 -24.81803 -23.70355 -22.86312 -21.68787 -21.09845 -20.55119 -19.64483 -18.73031 -17.39664 -16.80645 -16.74324 -16.31880 -15.45637 -15.25152 -14.82964 -14.44045 -14.40717 -14.28461 -14.00415 -13.79997 -13.36814 -13.28574 -13.23374 -12.98763 -12.84133 -12.66657 -12.45487 -12.35271 -12.28482 -12.00185 -11.76416 -11.49186 -11.19911 -10.92259 -10.70068 -10.66425 -10.38222 -9.91809 -9.90614 -9.67142 -9.52235 -9.40405 -9.11596 -8.65548 -8.59095 -8.44815 -8.36802 -6.10368 -4.07692 1.82267 2.45887 2.60274 2.89845 3.06790 3.26022 3.34511 3.38604 4.06324 4.40418 4.52027 4.60134 4.71270 4.91602 5.04515 5.05537 5.07217 5.21084 5.23140 5.26610 5.29996 5.33350 5.39132 5.40139 5.44173 5.59448 5.63800 5.72627 5.79723 5.88028 5.91635 5.99202 6.25075 6.25473 6.38599 6.54673 6.63779 6.71339 6.76495 6.80987 6.90240 6.93961 7.17361 7.22578 7.38148 7.53559 7.70644 7.74423 8.25700 8.47337 8.93747 9.53280 11.02714 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.004046 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.378504 B = 6919.108777 C = 8053.665416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.670 5.670 3 C 0.154 3.846 4 H 0.068 0.932 5 C 0.517 3.483 6 O -0.536 6.536 7 N -0.602 5.602 8 C 0.103 3.897 9 C -0.119 4.119 10 C -0.071 4.071 11 C -0.009 4.009 12 C -0.516 4.516 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.876 3.124 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.132 4.132 21 C 0.113 3.887 22 C -0.228 4.228 23 C 0.088 3.912 24 N -0.305 5.305 25 N -0.373 5.373 26 C 0.100 3.900 27 C 0.068 3.932 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.350 0.650 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.184 0.816 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 -14.986 -2.782 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.303 5.303 3 C 0.040 3.960 4 H 0.086 0.914 5 C 0.304 3.696 6 O -0.413 6.413 7 N -0.335 5.335 8 C -0.020 4.020 9 C -0.157 4.157 10 C -0.090 4.090 11 C -0.046 4.046 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.170 4.170 21 C -0.009 4.009 22 C -0.241 4.241 23 C -0.099 4.099 24 N -0.125 5.125 25 N -0.154 5.154 26 C -0.041 4.041 27 C -0.080 4.080 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.201 0.799 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.013 -15.144 -4.878 18.799 hybrid contribution 0.496 0.714 1.222 1.500 sum -9.517 -14.430 -3.656 17.668 Atomic orbital electron populations 1.22222 0.87182 1.02226 1.00150 1.60075 1.07578 1.11670 1.50973 1.19555 0.92974 0.90987 0.92477 0.91442 1.20479 0.88869 0.82954 0.77296 1.90671 1.59772 1.33094 1.57746 1.48132 1.16033 1.11778 1.57572 1.21901 0.93960 0.84772 1.01373 1.21807 0.97174 0.97082 0.99591 1.20989 0.94247 0.93862 0.99861 1.19612 0.95761 0.93722 0.95543 1.21121 1.09719 0.89086 1.35417 0.90866 1.25008 0.96962 0.95709 0.95706 1.69902 1.39649 0.97758 1.47003 0.86837 0.84605 0.77532 0.80654 1.20444 1.21441 1.19048 1.22059 0.98917 0.94925 1.01106 1.21642 0.81923 1.00113 0.97221 1.19405 1.14067 0.95493 0.95134 1.23678 0.97557 0.99542 0.89118 1.77413 1.19238 0.92331 1.23568 1.48429 1.47853 1.13176 1.05913 1.21897 1.01988 0.84813 0.95392 1.22294 1.01272 0.98649 0.85796 0.96049 0.91576 0.91140 0.82972 0.90670 0.91375 0.89267 0.92454 0.91705 0.96597 0.97232 0.92784 0.91150 0.92150 0.91697 0.89566 0.79926 0.90833 0.89037 0.89267 0.80998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.49 60.07 0.63 0.90 16 2 N -0.67 -7.27 6.26 -116.49 -0.73 -8.00 16 3 C 0.15 1.79 2.02 -70.02 -0.14 1.65 16 4 H 0.07 0.68 6.16 -51.93 -0.32 0.36 16 5 C 0.52 7.40 6.69 -10.98 -0.07 7.33 16 6 O -0.54 -9.19 15.69 5.55 0.09 -9.10 16 7 N -0.60 -8.34 2.98 -173.01 -0.52 -8.85 16 8 C 0.10 1.30 6.18 -3.93 -0.02 1.27 16 9 C -0.12 -1.90 5.17 -26.84 -0.14 -2.03 16 10 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 11 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 12 C -0.52 -13.68 8.94 -34.44 -0.31 -13.99 16 13 H 0.07 2.05 7.30 -52.49 -0.38 1.67 16 14 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 15 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 16 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 C -0.13 -2.08 5.36 -26.59 -0.14 -2.23 16 21 C 0.11 1.60 6.44 -3.69 -0.02 1.58 16 22 C -0.23 -2.86 4.58 -105.06 -0.48 -3.34 16 23 C 0.09 1.23 11.76 -17.37 -0.20 1.02 16 24 N -0.30 -4.45 12.58 30.62 0.39 -4.07 16 25 N -0.37 -4.57 4.01 -68.16 -0.27 -4.85 16 26 C 0.10 0.86 11.47 59.85 0.69 1.55 16 27 C 0.07 0.77 10.62 -17.23 -0.18 0.59 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.35 3.80 8.08 -39.29 -0.32 3.49 16 32 H 0.08 0.79 3.99 -51.93 -0.21 0.58 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 44 H 0.18 2.48 8.06 -52.49 -0.42 2.06 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.17 1.49 7.38 -52.48 -0.39 1.10 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -33.07 379.91 -7.76 -40.83 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.75 Total: 3.42 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.79 Total: -5.69 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.36 Total: -51.79 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.07 -7.76 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572485521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.772 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds