Wall clock time and date at job start Tue Mar 31 2020 13:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48498 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47095 * 299.99778 * 3 2 1 6 6 H 1.48493 * 109.47562 * 59.99787 * 3 2 1 7 7 C 1.38808 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00116 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00292 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00183 * 180.02562 * 9 7 2 11 11 C 1.53045 * 109.46059 * 205.00559 * 10 9 7 12 12 C 1.53190 * 109.31191 * 178.61619 * 11 10 9 13 13 N 1.46928 * 108.77661 * 54.63421 * 12 11 10 14 14 C 1.34781 * 120.63225 * 126.36582 * 13 12 11 15 15 O 1.21281 * 119.99905 * 4.98925 * 14 13 12 16 16 C 1.50692 * 120.00118 * 184.98526 * 14 13 12 17 17 C 1.53003 * 115.56077 * 268.44567 * 16 14 13 18 18 C 1.53004 * 109.47144 * 90.06232 * 17 16 14 19 19 C 1.53003 * 109.47144 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47122 * 59.99473 * 19 18 17 21 21 C 1.52995 * 109.47420 * 300.00197 * 20 19 18 22 22 C 1.52992 * 109.47336 * 330.05923 * 17 16 14 23 23 C 1.52997 * 117.50147 * 54.13394 * 16 14 13 24 24 C 1.52991 * 59.99897 * 107.49053 * 23 16 14 25 25 C 1.46924 * 118.73957 * 306.64056 * 13 12 11 26 26 C 1.52761 * 109.00514 * 53.30905 * 25 13 12 27 27 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99904 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.45152 * 324.96737 * 10 9 7 30 30 H 1.08992 * 109.49959 * 58.65936 * 11 10 9 31 31 H 1.08999 * 109.49303 * 298.56508 * 11 10 9 32 32 H 1.08998 * 109.58812 * 294.84326 * 12 11 10 33 33 H 1.09005 * 109.58444 * 174.41673 * 12 11 10 34 34 H 1.09004 * 109.46867 * 210.06076 * 17 16 14 35 35 H 1.08994 * 109.47109 * 299.99624 * 18 17 16 36 36 H 1.08998 * 109.47073 * 59.99885 * 18 17 16 37 37 H 1.09004 * 109.46867 * 299.99843 * 19 18 17 38 38 H 1.08998 * 109.47185 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47088 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46947 * 60.00420 * 20 19 18 41 41 H 1.08994 * 109.47241 * 300.00112 * 21 20 19 42 42 H 1.09004 * 109.47352 * 179.97438 * 21 20 19 43 43 H 1.08998 * 109.47390 * 300.00372 * 22 17 16 44 44 H 1.09004 * 109.47018 * 60.00245 * 22 17 16 45 45 H 1.09003 * 117.49803 * 359.97438 * 23 16 14 46 46 H 1.09003 * 117.50458 * 214.98357 * 23 16 14 47 47 H 1.08998 * 117.49982 * 107.49774 * 24 23 16 48 48 H 1.09006 * 117.49998 * 252.51015 * 24 23 16 49 49 H 1.08997 * 109.58972 * 173.14209 * 25 13 12 50 50 H 1.09000 * 109.58565 * 293.57260 * 25 13 12 51 51 H 1.09007 * 109.56567 * 185.54953 * 26 25 13 52 52 H 1.08996 * 109.36102 * 65.50456 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 6 1.1806 -4.7528 -0.6063 12 6 1.9621 -6.0700 -0.6351 13 7 2.4415 -6.3652 0.7220 14 6 2.1727 -7.5517 1.3023 15 8 1.6086 -8.4210 0.6722 16 6 2.5732 -7.7981 2.7340 17 6 3.9546 -8.4248 2.9346 18 6 5.0027 -7.3178 3.0651 19 6 6.3841 -7.9445 3.2650 20 6 6.7223 -8.8279 2.0625 21 6 5.6742 -9.9348 1.9321 22 6 4.2931 -9.3086 1.7325 23 6 2.0935 -6.7947 3.7846 24 6 1.4699 -8.1902 3.7187 25 6 3.2142 -5.3403 1.4369 26 6 2.4234 -4.0334 1.4404 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0016 29 1 2.9684 -3.5508 -0.5873 30 1 0.9015 -4.4729 -1.6220 31 1 0.2815 -4.8763 -0.0025 32 1 2.8124 -5.9757 -1.3106 33 1 1.3100 -6.8744 -0.9753 34 1 3.9507 -9.0302 3.8410 35 1 5.0066 -6.7125 2.1587 36 1 4.7615 -6.6882 3.9215 37 1 6.3806 -8.5501 4.1713 38 1 7.1308 -7.1559 3.3584 39 1 7.7066 -9.2740 2.2048 40 1 6.7258 -8.2223 1.1563 41 1 5.6706 -10.5405 2.8383 42 1 5.9148 -10.5640 1.0751 43 1 3.5464 -10.0972 1.6395 44 1 4.2970 -8.7032 0.8261 45 1 1.4885 -5.9559 3.4401 46 1 2.7619 -6.5808 4.6186 47 1 1.7280 -8.8946 4.5095 48 1 0.4543 -8.2699 3.3310 49 1 3.3880 -5.6633 2.4633 50 1 4.1687 -5.1852 0.9339 51 1 3.0289 -3.2414 1.8813 52 1 1.5127 -4.1637 2.0249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997209313.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:14 Heat of formation + Delta-G solvation = -23.097349 kcal Electronic energy + Delta-G solvation = -29038.826217 eV Core-core repulsion = 25424.000626 eV Total energy + Delta-G solvation = -3614.825591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94570 -38.58981 -37.33581 -36.30308 -34.43930 -31.99611 -31.05912 -30.85642 -30.58013 -29.24754 -25.53798 -24.01584 -23.56937 -22.89384 -22.68038 -22.10106 -21.45959 -20.11832 -19.85835 -18.16711 -17.07449 -16.87938 -16.15449 -15.66792 -15.14581 -14.86224 -14.52432 -14.36225 -14.29939 -14.09950 -13.71983 -13.68585 -13.45571 -13.33059 -12.99800 -12.77798 -12.46714 -12.24226 -12.21161 -11.96312 -11.67558 -11.55586 -11.40336 -11.21970 -11.00201 -10.96208 -10.90310 -10.83396 -10.67323 -10.55043 -10.43001 -10.21746 -10.12290 -9.93702 -9.83064 -9.69522 -9.41989 -8.92396 -8.44798 -6.99709 -5.79931 -3.09130 2.71255 3.05765 3.40392 3.46014 3.48382 3.55158 4.24272 4.45321 4.53898 4.55490 4.56918 4.74012 4.75888 4.98077 5.12199 5.14771 5.18702 5.30735 5.31487 5.33590 5.35104 5.39162 5.41218 5.44862 5.49688 5.53437 5.55351 5.67825 5.72190 5.74933 5.82165 5.85575 5.94765 5.94932 5.96294 5.99809 6.00011 6.04091 6.09374 6.18973 6.22944 6.29277 6.38733 6.39445 6.50711 6.64048 6.89431 7.02903 7.57668 7.66667 8.30997 8.38325 9.49629 10.07239 10.41892 11.42688 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.003283 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.649557 B = 8526.858550 C = 9047.537821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.115 3.885 13 N -0.600 5.600 14 C 0.556 3.444 15 O -0.546 6.546 16 C -0.148 4.148 17 C -0.037 4.037 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.167 4.167 24 C -0.146 4.146 25 C 0.098 3.902 26 C -0.151 4.151 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.661 -19.147 7.718 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.007 4.007 13 N -0.332 5.332 14 C 0.343 3.657 15 O -0.424 6.424 16 C -0.151 4.151 17 C -0.055 4.055 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.204 4.204 24 C -0.183 4.183 25 C -0.025 4.025 26 C -0.192 4.192 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.116 0.884 49 H 0.110 0.890 50 H 0.081 0.919 51 H 0.093 0.907 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.487 -19.434 7.342 23.271 hybrid contribution 0.081 1.159 0.050 1.163 sum 10.567 -18.275 7.392 22.367 Atomic orbital electron populations 1.69673 1.05125 1.25558 1.57675 1.24747 0.95492 0.97696 1.02998 0.86145 0.78784 0.84220 0.77202 1.20548 1.21887 1.21886 1.19274 0.90984 0.84085 1.42659 0.91132 1.42445 1.05799 0.99721 1.88499 1.20160 0.94398 0.86045 0.92497 1.22204 0.99158 0.94189 1.02196 1.21618 0.98675 0.97952 0.82488 1.48105 1.53843 1.14772 1.16490 1.19412 0.77895 0.81480 0.86869 1.90658 1.43196 1.43881 1.64685 1.21471 0.97378 1.06236 0.90058 1.20611 0.89813 0.95949 0.99154 1.21851 0.94039 0.97633 1.02654 1.21519 0.96800 0.99025 0.98168 1.21553 0.98284 0.97315 0.98714 1.21515 0.94810 0.97627 1.01544 1.21578 0.96695 0.99255 0.97557 1.23231 1.03498 0.93617 1.00092 1.23061 0.97371 0.98186 0.99703 1.22085 0.94252 0.88575 0.97547 1.22605 1.00038 0.94930 1.01638 0.93549 0.78292 0.93488 0.90588 0.91944 0.91669 0.89523 0.90419 0.90988 0.91498 0.92150 0.91877 0.92251 0.91976 0.92130 0.92101 0.91350 0.91996 0.87778 0.87762 0.88034 0.88427 0.88991 0.91871 0.90693 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.59 5.12 -53.39 -0.27 -17.86 16 10 C 0.18 3.38 2.73 -67.89 -0.19 3.20 16 11 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 12 C 0.12 1.68 6.42 -3.71 -0.02 1.66 16 13 N -0.60 -8.42 2.98 -173.03 -0.52 -8.94 16 14 C 0.56 8.05 5.08 -10.99 -0.06 7.99 16 15 O -0.55 -9.64 16.27 5.56 0.09 -9.55 16 16 C -0.15 -1.67 1.13 -155.67 -0.18 -1.85 16 17 C -0.04 -0.35 2.31 -90.62 -0.21 -0.56 16 18 C -0.12 -1.08 3.87 -26.73 -0.10 -1.19 16 19 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.12 -1.00 5.92 -26.76 -0.16 -1.16 16 22 C -0.11 -1.19 4.30 -26.76 -0.12 -1.31 16 23 C -0.17 -1.70 7.20 -26.74 -0.19 -1.89 16 24 C -0.15 -1.51 9.88 -26.74 -0.26 -1.77 16 25 C 0.10 1.28 4.28 -3.93 -0.02 1.26 16 26 C -0.15 -2.47 5.64 -26.83 -0.15 -2.62 16 27 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 29 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.31 7.04 -51.93 -0.37 0.95 16 34 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 35 H 0.07 0.71 5.76 -51.93 -0.30 0.41 16 36 H 0.07 0.54 6.94 -51.93 -0.36 0.18 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.77 7.17 -51.93 -0.37 0.40 16 45 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 46 H 0.10 0.87 7.33 -51.93 -0.38 0.49 16 47 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 48 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.09 1.04 3.06 -51.93 -0.16 0.88 16 50 H 0.06 0.79 7.80 -51.93 -0.40 0.38 16 51 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 52 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -30.65 385.66 -10.85 -41.51 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -9.31 Total: 9.05 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.36 Total: -9.90 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.06 Total: -53.87 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.65 -10.85 -41.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997209313.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.411 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds