Wall clock time and date at job start Tue Mar 31 2020 12:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00136 * 2 1 4 4 H 1.48500 * 109.47388 * 85.00873 * 3 2 1 5 5 H 1.48500 * 109.47209 * 205.01347 * 3 2 1 6 6 H 1.48503 * 109.47260 * 325.00978 * 3 2 1 7 7 C 1.38814 * 119.99678 * 180.26971 * 2 1 3 8 8 H 1.08001 * 119.99510 * 186.98708 * 7 2 1 9 9 N 1.36933 * 120.00430 * 6.99355 * 7 2 1 10 10 C 1.47026 * 125.64286 * 5.86301 * 9 7 2 11 11 C 1.54333 * 107.26909 * 181.02346 * 10 9 7 12 12 C 1.55160 * 102.93931 * 22.18897 * 11 10 9 13 13 H 1.08996 * 111.00349 * 82.61514 * 12 11 10 14 14 N 1.46507 * 110.99895 * 206.42530 * 12 11 10 15 15 C 1.34781 * 119.99437 * 205.00001 * 14 12 11 16 16 O 1.21280 * 120.00131 * 0.02562 * 15 14 12 17 17 C 1.50695 * 119.99758 * 180.02562 * 15 14 12 18 18 H 1.09008 * 109.47090 * 300.00358 * 17 15 14 19 19 C 1.53002 * 109.47246 * 59.99858 * 17 15 14 20 20 C 1.53000 * 109.47061 * 180.02562 * 19 17 15 21 21 C 1.53002 * 109.47218 * 300.00078 * 20 19 17 22 22 H 1.09006 * 109.46743 * 300.00143 * 21 20 19 23 23 C 1.53001 * 109.47379 * 180.02562 * 21 20 19 24 24 C 1.53780 * 113.61298 * 159.13674 * 23 21 20 25 25 C 1.53953 * 87.01787 * 220.04679 * 24 23 21 26 26 C 1.53777 * 87.11416 * 25.36311 * 25 24 23 27 27 C 1.53002 * 109.47168 * 59.99987 * 21 20 19 28 28 C 1.53000 * 109.47061 * 300.00108 * 27 21 20 29 29 C 1.47425 * 125.65135 * 185.55008 * 9 7 2 30 30 H 0.96998 * 119.99721 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.88450 * 300.43364 * 10 9 7 32 32 H 1.09000 * 109.88704 * 61.45294 * 10 9 7 33 33 H 1.08997 * 110.71837 * 140.55571 * 11 10 9 34 34 H 1.09000 * 110.71774 * 263.65302 * 11 10 9 35 35 H 0.96998 * 120.00097 * 25.00650 * 14 12 11 36 36 H 1.08999 * 109.46892 * 299.99689 * 19 17 15 37 37 H 1.08993 * 109.47090 * 60.00380 * 19 17 15 38 38 H 1.08998 * 109.47463 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.47627 * 59.99872 * 20 19 17 40 40 H 1.08996 * 112.84471 * 290.33096 * 23 21 20 41 41 H 1.09001 * 113.61358 * 334.56550 * 24 23 21 42 42 H 1.09002 * 113.61776 * 105.47112 * 24 23 21 43 43 H 1.08999 * 113.53670 * 270.80968 * 25 24 23 44 44 H 1.08997 * 113.74233 * 139.94387 * 25 24 23 45 45 H 1.08999 * 113.62016 * 220.09219 * 26 25 24 46 46 H 1.09002 * 113.69400 * 89.19360 * 26 25 24 47 47 H 1.08999 * 109.46892 * 180.02562 * 27 21 20 48 48 H 1.08993 * 109.47090 * 60.00122 * 27 21 20 49 49 H 1.08997 * 109.47627 * 300.00128 * 28 27 21 50 50 H 1.08998 * 109.47463 * 179.97438 * 28 27 21 51 51 H 1.09002 * 110.36657 * 274.74646 * 29 9 7 52 52 H 1.08997 * 110.36285 * 37.06909 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 1.3947 5 1 3.5965 1.4120 -0.5920 6 1 1.5044 2.6199 -0.8029 7 6 2.0102 -1.2022 -0.0057 8 1 3.0842 -1.2062 0.1081 9 7 1.3332 -2.3830 -0.1556 10 6 -0.1030 -2.5170 -0.4401 11 6 -0.4199 -4.0263 -0.4970 12 6 0.7405 -4.6560 0.3180 13 1 0.5354 -4.6123 1.3876 14 7 0.9948 -6.0341 -0.1093 15 6 1.5652 -6.9092 0.7424 16 8 1.8675 -6.5560 1.8626 17 6 1.8274 -8.3266 0.3028 18 1 0.8856 -8.8019 0.0282 19 6 2.7666 -8.3205 -0.9050 20 6 3.0322 -9.7596 -1.3517 21 6 3.6807 -10.5380 -0.2052 22 1 4.6226 -10.0630 0.0694 23 6 3.9469 -11.9769 -0.6521 24 6 5.0192 -12.6936 0.1854 25 6 5.5280 -13.3023 -1.1340 26 6 4.9145 -12.0832 -1.8426 27 6 2.7414 -10.5441 1.0026 28 6 2.4758 -9.1051 1.4493 29 6 1.9249 -3.7302 -0.0650 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6836 -2.0461 0.3531 32 1 -0.3365 -2.0505 -1.3972 33 1 -1.3803 -4.2367 -0.0264 34 1 -0.4100 -4.3839 -1.5267 35 1 0.7528 -6.3166 -1.0051 36 1 2.3044 -7.7664 -1.7219 37 1 3.7083 -7.8453 -0.6305 38 1 3.7017 -9.7553 -2.2118 39 1 2.0904 -10.2346 -1.6262 40 1 3.0326 -12.5565 -0.7793 41 1 5.7307 -12.0155 0.6565 42 1 4.6120 -13.4298 0.8786 43 1 5.0466 -14.2455 -1.3924 44 1 6.6146 -13.3480 -1.2059 45 1 4.4229 -12.3271 -2.7844 46 1 5.5964 -11.2371 -1.9279 47 1 3.2037 -11.0983 1.8195 48 1 1.7996 -11.0190 0.7280 49 1 3.4177 -8.6301 1.7239 50 1 1.8064 -9.1093 2.3094 51 1 2.3448 -4.0256 -1.0265 52 1 2.6919 -3.7563 0.7090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014786607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:38 Heat of formation + Delta-G solvation = -24.625572 kcal Electronic energy + Delta-G solvation = -27404.782619 eV Core-core repulsion = 23789.890759 eV Total energy + Delta-G solvation = -3614.891860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.42011 -39.39481 -37.55685 -36.66330 -33.99788 -32.11546 -31.26709 -30.91909 -29.11567 -27.21542 -25.97216 -25.71533 -24.37423 -22.63588 -22.51190 -20.57298 -20.32223 -20.08193 -19.81489 -19.38668 -17.24378 -16.68056 -16.21062 -15.78185 -15.34320 -15.06369 -14.67390 -14.50506 -14.30121 -14.05688 -13.68753 -13.45193 -13.07027 -12.96419 -12.75867 -12.54973 -12.42808 -12.37771 -12.18017 -11.85114 -11.80409 -11.75683 -11.27856 -11.26151 -11.00887 -10.83681 -10.78888 -10.76001 -10.70952 -10.66509 -10.30425 -10.12078 -10.09018 -10.04563 -9.89264 -9.71951 -9.38359 -8.67685 -8.59188 -6.81185 -5.68474 -3.04729 2.86274 3.40184 3.42686 3.47539 3.49988 4.19378 4.27362 4.35159 4.48713 4.52476 4.57523 4.65838 4.70775 4.98745 5.07349 5.13604 5.21975 5.24829 5.31790 5.33850 5.36410 5.41288 5.44393 5.44535 5.46707 5.57507 5.61388 5.63983 5.66221 5.77044 5.79876 5.81792 5.85536 5.90279 5.93561 6.02788 6.09229 6.17920 6.19893 6.22572 6.33586 6.36341 6.44228 6.63510 6.72941 7.02373 7.45197 7.65513 7.77382 7.84302 8.27755 8.49752 9.22471 9.83282 10.48570 11.41109 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.026391 B = 0.002194 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.700635 B =12760.064914 C =13104.477651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.172 3.828 11 C -0.148 4.148 12 C 0.127 3.873 13 H 0.096 0.904 14 N -0.717 5.717 15 C 0.513 3.487 16 O -0.541 6.541 17 C -0.105 4.105 18 H 0.093 0.907 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.079 4.079 22 H 0.071 0.929 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.111 4.111 28 C -0.099 4.099 29 C 0.130 3.870 30 H 0.252 0.748 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.396 0.604 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.019 0.981 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -27.368 -4.072 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.021 3.979 13 H 0.114 0.886 14 N -0.368 5.368 15 C 0.299 3.701 16 O -0.417 6.417 17 C -0.126 4.126 18 H 0.111 0.889 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.097 4.097 22 H 0.090 0.910 23 C -0.122 4.122 24 C -0.175 4.175 25 C -0.183 4.183 26 C -0.175 4.175 27 C -0.149 4.149 28 C -0.137 4.137 29 C 0.002 3.998 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.037 0.963 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.912 -26.860 -3.247 27.498 hybrid contribution 0.233 0.813 -0.525 0.995 sum 5.144 -26.047 -3.772 26.817 Atomic orbital electron populations 1.69946 1.04915 1.25010 1.56988 1.24824 0.95712 0.97754 1.02293 0.86085 0.78648 0.83447 0.77508 1.21607 1.20652 1.21655 1.19066 0.90885 0.82551 1.42968 0.90451 1.44399 1.05003 0.99836 1.83692 1.21224 0.85617 0.87871 1.00548 1.23141 0.97089 0.99834 0.98644 1.22350 0.96652 0.78980 0.99869 0.88595 1.46058 1.62582 1.11582 1.16529 1.20652 0.77019 0.87248 0.85228 1.90704 1.51228 1.79408 1.20400 1.21348 1.00707 0.92942 0.97601 0.88884 1.21534 0.99695 0.97451 0.96209 1.21533 1.00843 0.94547 0.97771 1.21204 0.99066 0.94328 0.95133 0.91046 1.22583 0.97304 0.95934 0.96421 1.22984 0.98487 0.99678 0.96349 1.22846 1.00485 0.97865 0.97074 1.22925 0.98744 0.98327 0.97454 1.21569 0.99310 0.96499 0.97496 1.21332 1.01570 0.94187 0.96587 1.21874 0.94272 0.86099 0.97550 0.93775 0.91643 0.95010 0.91664 0.92215 0.77038 0.91383 0.91259 0.91591 0.91864 0.89474 0.90121 0.91754 0.90479 0.91701 0.91725 0.90088 0.91767 0.92070 0.91187 0.91299 0.96305 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 10.45 55.49 0.58 -26.75 16 2 C -0.01 -0.28 5.45 -17.43 -0.10 -0.37 16 3 Si 0.91 22.48 29.56 -169.99 -5.02 17.46 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.23 -6.49 10.26 -15.06 -0.15 -6.64 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -15.82 3.39 -169.93 -0.58 -16.40 16 10 C 0.17 4.19 5.45 -3.06 -0.02 4.17 16 11 C -0.15 -2.69 6.59 -24.89 -0.16 -2.86 16 12 C 0.13 2.35 3.44 -65.66 -0.23 2.12 16 13 H 0.10 2.01 7.54 -51.93 -0.39 1.61 16 14 N -0.72 -10.28 5.09 -51.61 -0.26 -10.55 16 15 C 0.51 7.57 7.15 -10.99 -0.08 7.49 16 16 O -0.54 -10.41 15.62 5.56 0.09 -10.32 16 17 C -0.10 -1.08 2.52 -91.77 -0.23 -1.31 16 18 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 19 C -0.11 -0.99 5.10 -26.73 -0.14 -1.12 16 20 C -0.11 -0.79 5.02 -26.73 -0.13 -0.92 16 21 C -0.08 -0.57 1.91 -90.62 -0.17 -0.74 16 22 H 0.07 0.58 7.98 -51.93 -0.41 0.17 16 23 C -0.10 -0.66 3.11 -89.81 -0.28 -0.94 16 24 C -0.14 -0.87 7.63 -25.83 -0.20 -1.06 16 25 C -0.15 -0.86 8.09 -25.83 -0.21 -1.07 16 26 C -0.14 -0.85 6.75 -25.92 -0.17 -1.02 16 27 C -0.11 -0.87 5.19 -26.73 -0.14 -1.01 16 28 C -0.10 -1.03 4.49 -26.73 -0.12 -1.15 16 29 C 0.13 2.84 6.93 -2.41 -0.02 2.82 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.07 1.78 6.89 -51.93 -0.36 1.42 16 32 H 0.03 0.83 7.96 -51.93 -0.41 0.42 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.95 8.01 -51.93 -0.42 0.54 16 35 H 0.40 4.47 7.99 -40.82 -0.33 4.14 16 36 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.45 7.49 -51.93 -0.39 0.06 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.53 7.99 -51.93 -0.41 0.12 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 50 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -32.31 396.23 -11.59 -43.90 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -9.82 Total: 0.29 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.55 Total: -3.61 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.26 Total: -53.69 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.31 -11.59 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014786607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.276 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds