Wall clock time and date at job start Tue Mar 31 2020 12:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00136 * 2 1 4 4 H 1.48500 * 109.47388 * 85.00873 * 3 2 1 5 5 H 1.48500 * 109.47209 * 205.01347 * 3 2 1 6 6 H 1.48503 * 109.47260 * 325.00978 * 3 2 1 7 7 C 1.38814 * 119.99678 * 180.26971 * 2 1 3 8 8 H 1.08001 * 119.99510 * 186.98708 * 7 2 1 9 9 N 1.36933 * 120.00430 * 6.99355 * 7 2 1 10 10 C 1.47026 * 125.64286 * 5.86301 * 9 7 2 11 11 C 1.54333 * 107.26909 * 181.02346 * 10 9 7 12 12 C 1.55160 * 102.93931 * 22.18897 * 11 10 9 13 13 H 1.08996 * 111.00349 * 82.61514 * 12 11 10 14 14 N 1.46507 * 110.99895 * 206.42530 * 12 11 10 15 15 C 1.34781 * 119.99437 * 205.00001 * 14 12 11 16 16 O 1.21280 * 120.00131 * 0.02562 * 15 14 12 17 17 C 1.50695 * 119.99758 * 180.02562 * 15 14 12 18 18 H 1.09008 * 109.47090 * 300.00358 * 17 15 14 19 19 C 1.53002 * 109.47246 * 59.99858 * 17 15 14 20 20 C 1.53000 * 109.47061 * 180.02562 * 19 17 15 21 21 C 1.53002 * 109.47218 * 300.00078 * 20 19 17 22 22 H 1.09006 * 109.46743 * 300.00143 * 21 20 19 23 23 C 1.53001 * 109.47379 * 180.02562 * 21 20 19 24 24 C 1.53780 * 113.61298 * 159.13674 * 23 21 20 25 25 C 1.53953 * 87.01787 * 220.04679 * 24 23 21 26 26 C 1.53777 * 87.11416 * 25.36311 * 25 24 23 27 27 C 1.53002 * 109.47168 * 59.99987 * 21 20 19 28 28 C 1.53000 * 109.47061 * 300.00108 * 27 21 20 29 29 C 1.47425 * 125.65135 * 185.55008 * 9 7 2 30 30 H 0.96998 * 119.99721 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.88450 * 300.43364 * 10 9 7 32 32 H 1.09000 * 109.88704 * 61.45294 * 10 9 7 33 33 H 1.08997 * 110.71837 * 140.55571 * 11 10 9 34 34 H 1.09000 * 110.71774 * 263.65302 * 11 10 9 35 35 H 0.96998 * 120.00097 * 25.00650 * 14 12 11 36 36 H 1.08999 * 109.46892 * 299.99689 * 19 17 15 37 37 H 1.08993 * 109.47090 * 60.00380 * 19 17 15 38 38 H 1.08998 * 109.47463 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.47627 * 59.99872 * 20 19 17 40 40 H 1.08996 * 112.84471 * 290.33096 * 23 21 20 41 41 H 1.09001 * 113.61358 * 334.56550 * 24 23 21 42 42 H 1.09002 * 113.61776 * 105.47112 * 24 23 21 43 43 H 1.08999 * 113.53670 * 270.80968 * 25 24 23 44 44 H 1.08997 * 113.74233 * 139.94387 * 25 24 23 45 45 H 1.08999 * 113.62016 * 220.09219 * 26 25 24 46 46 H 1.09002 * 113.69400 * 89.19360 * 26 25 24 47 47 H 1.08999 * 109.46892 * 180.02562 * 27 21 20 48 48 H 1.08993 * 109.47090 * 60.00122 * 27 21 20 49 49 H 1.08997 * 109.47627 * 300.00128 * 28 27 21 50 50 H 1.08998 * 109.47463 * 179.97438 * 28 27 21 51 51 H 1.09002 * 110.36657 * 274.74646 * 29 9 7 52 52 H 1.08997 * 110.36285 * 37.06909 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 1.3947 5 1 3.5965 1.4120 -0.5920 6 1 1.5044 2.6199 -0.8029 7 6 2.0102 -1.2022 -0.0057 8 1 3.0842 -1.2062 0.1081 9 7 1.3332 -2.3830 -0.1556 10 6 -0.1030 -2.5170 -0.4401 11 6 -0.4199 -4.0263 -0.4970 12 6 0.7405 -4.6560 0.3180 13 1 0.5354 -4.6123 1.3876 14 7 0.9948 -6.0341 -0.1093 15 6 1.5652 -6.9092 0.7424 16 8 1.8675 -6.5560 1.8626 17 6 1.8274 -8.3266 0.3028 18 1 0.8856 -8.8019 0.0282 19 6 2.7666 -8.3205 -0.9050 20 6 3.0322 -9.7596 -1.3517 21 6 3.6807 -10.5380 -0.2052 22 1 4.6226 -10.0630 0.0694 23 6 3.9469 -11.9769 -0.6521 24 6 5.0192 -12.6936 0.1854 25 6 5.5280 -13.3023 -1.1340 26 6 4.9145 -12.0832 -1.8426 27 6 2.7414 -10.5441 1.0026 28 6 2.4758 -9.1051 1.4493 29 6 1.9249 -3.7302 -0.0650 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6836 -2.0461 0.3531 32 1 -0.3365 -2.0505 -1.3972 33 1 -1.3803 -4.2367 -0.0264 34 1 -0.4100 -4.3839 -1.5267 35 1 0.7528 -6.3166 -1.0051 36 1 2.3044 -7.7664 -1.7219 37 1 3.7083 -7.8453 -0.6305 38 1 3.7017 -9.7553 -2.2118 39 1 2.0904 -10.2346 -1.6262 40 1 3.0326 -12.5565 -0.7793 41 1 5.7307 -12.0155 0.6565 42 1 4.6120 -13.4298 0.8786 43 1 5.0466 -14.2455 -1.3924 44 1 6.6146 -13.3480 -1.2059 45 1 4.4229 -12.3271 -2.7844 46 1 5.5964 -11.2371 -1.9279 47 1 3.2037 -11.0983 1.8195 48 1 1.7996 -11.0190 0.7280 49 1 3.4177 -8.6301 1.7239 50 1 1.8064 -9.1093 2.3094 51 1 2.3448 -4.0256 -1.0265 52 1 2.6919 -3.7563 0.7090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014786607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:37 Heat of formation + Delta-G solvation = -42.719334 kcal Electronic energy + Delta-G solvation = -27405.567224 eV Core-core repulsion = 23789.890759 eV Total energy + Delta-G solvation = -3615.676464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39067 -40.24495 -39.02419 -37.63896 -35.62921 -33.83744 -32.25760 -31.65076 -30.92871 -28.87921 -26.81950 -26.44413 -26.02335 -23.42988 -23.30705 -22.14216 -21.83315 -21.23297 -20.65125 -20.04346 -19.02798 -18.07043 -17.39765 -16.74479 -16.60762 -16.08907 -15.95537 -15.84942 -15.53316 -15.03029 -14.81796 -14.68483 -14.20729 -14.03376 -13.97274 -13.78247 -13.68167 -13.25765 -13.23177 -13.05956 -12.94701 -12.77193 -12.61093 -12.44107 -12.33305 -12.09592 -12.04936 -11.95453 -11.92360 -11.83801 -11.61360 -11.34510 -11.31906 -11.23059 -10.85349 -10.75955 -10.65750 -10.46335 -10.06795 -8.93059 -7.86619 -5.26089 1.44117 1.45979 1.55557 1.66998 2.17384 2.49200 3.29115 3.57315 3.64034 3.66937 3.75568 3.81997 3.88961 3.93940 4.01078 4.04839 4.10296 4.19279 4.34239 4.37239 4.46756 4.52961 4.57690 4.60839 4.65870 4.70827 4.72801 4.84756 4.90023 4.95009 4.96449 4.96826 5.01494 5.08866 5.12023 5.17468 5.20032 5.21285 5.25273 5.30643 5.32733 5.38222 5.49288 5.52931 5.55938 5.58358 5.61603 5.74839 5.78455 6.18311 6.63129 7.06354 7.32806 7.72336 8.36075 9.20938 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.026391 B = 0.002194 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.700635 B =12760.064914 C =13104.477651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.625 5.625 10 C 0.176 3.824 11 C -0.126 4.126 12 C 0.145 3.855 13 H 0.069 0.931 14 N -0.702 5.702 15 C 0.509 3.491 16 O -0.591 6.591 17 C -0.093 4.093 18 H 0.124 0.876 19 C -0.109 4.109 20 C -0.103 4.103 21 C -0.076 4.076 22 H 0.057 0.943 23 C -0.099 4.099 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.103 4.103 28 C -0.098 4.098 29 C 0.129 3.871 30 H 0.249 0.751 31 H 0.028 0.972 32 H 0.007 0.993 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.045 0.955 50 H 0.055 0.945 51 H 0.035 0.965 52 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -29.663 -5.858 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.194 1.194 6 H -0.215 1.215 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.352 5.352 10 C 0.051 3.949 11 C -0.164 4.164 12 C 0.038 3.962 13 H 0.087 0.913 14 N -0.353 5.353 15 C 0.298 3.702 16 O -0.470 6.470 17 C -0.114 4.114 18 H 0.141 0.859 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.095 4.095 22 H 0.075 0.925 23 C -0.117 4.117 24 C -0.179 4.179 25 C -0.182 4.182 26 C -0.174 4.174 27 C -0.140 4.140 28 C -0.136 4.136 29 C 0.002 3.998 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.254 0.746 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.699 -29.208 -5.069 30.014 hybrid contribution 0.355 1.511 0.082 1.555 sum 5.054 -27.696 -4.987 28.592 Atomic orbital electron populations 1.70161 1.06204 1.25452 1.57684 1.25690 0.96703 1.01064 1.02312 0.85040 0.77786 0.78998 0.77354 1.21404 1.19444 1.21492 1.19407 0.91264 0.84038 1.42961 0.90598 1.44689 1.06011 1.00757 1.83710 1.21041 0.84336 0.91839 0.97704 1.22958 0.97641 0.95011 1.00831 1.21812 0.95121 0.80736 0.98543 0.91260 1.45818 1.62324 1.09612 1.17586 1.21530 0.75532 0.88802 0.84357 1.90692 1.53100 1.80521 1.22733 1.21371 1.02459 0.89541 0.97983 0.85859 1.21545 0.98427 0.98949 0.95719 1.21506 1.01795 0.93101 0.97675 1.21162 0.98296 0.95029 0.95013 0.92490 1.22548 0.97616 0.95158 0.96368 1.23000 0.98528 0.99735 0.96654 1.22866 1.00552 0.98138 0.96678 1.22919 0.98631 0.98208 0.97680 1.21511 1.00229 0.94483 0.97809 1.21307 1.00040 0.95866 0.96407 1.21984 0.95030 0.85277 0.97502 0.94181 0.95368 0.97505 0.89456 0.88818 0.74589 0.90002 0.93209 0.90901 0.90174 0.88591 0.90883 0.91452 0.89743 0.91809 0.91057 0.90633 0.91672 0.90480 0.93622 0.92669 0.94679 0.96205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 10.45 21.65 0.23 -57.47 16 2 C -0.06 -3.76 5.45 84.86 0.46 -3.30 16 3 Si 0.98 46.89 29.56 68.60 2.03 48.92 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.25 -14.53 10.26 84.03 0.86 -13.66 16 8 H 0.08 4.33 7.84 -2.91 -0.02 4.31 16 9 N -0.62 -33.52 3.39 -691.53 -2.35 -35.87 16 10 C 0.18 8.70 5.45 86.73 0.47 9.17 16 11 C -0.13 -4.36 6.59 31.79 0.21 -4.15 16 12 C 0.14 5.27 3.44 46.46 0.16 5.43 16 13 H 0.07 2.94 7.54 -2.39 -0.02 2.93 16 14 N -0.70 -18.68 5.09 -435.59 -2.22 -20.89 16 15 C 0.51 14.53 7.15 87.65 0.63 15.16 16 16 O -0.59 -23.18 15.62 -3.03 -0.05 -23.23 16 17 C -0.09 -1.71 2.52 -11.54 -0.03 -1.74 16 18 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 19 C -0.11 -1.66 5.10 30.59 0.16 -1.50 16 20 C -0.10 -1.16 5.02 30.59 0.15 -1.00 16 21 C -0.08 -0.95 1.91 -10.79 -0.02 -0.97 16 22 H 0.06 0.88 7.98 -2.38 -0.02 0.86 16 23 C -0.10 -1.01 3.11 -10.27 -0.03 -1.04 16 24 C -0.14 -1.57 7.63 31.18 0.24 -1.33 16 25 C -0.14 -1.45 8.09 31.18 0.25 -1.20 16 26 C -0.14 -1.39 6.75 31.12 0.21 -1.18 16 27 C -0.10 -1.40 5.19 30.59 0.16 -1.24 16 28 C -0.10 -1.96 4.49 30.59 0.14 -1.83 16 29 C 0.13 5.69 6.93 86.93 0.60 6.29 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.03 1.59 6.89 -2.39 -0.02 1.57 16 32 H 0.01 0.36 7.96 -2.39 -0.02 0.34 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 35 H 0.42 7.81 7.99 -92.71 -0.74 7.07 16 36 H 0.08 1.05 7.56 -2.39 -0.02 1.03 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.77 7.49 -2.39 -0.02 0.75 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.91 7.99 -2.39 -0.02 0.89 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 47 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 50 H 0.05 1.24 8.10 -2.39 -0.02 1.23 16 51 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.55 396.23 2.39 -71.16 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.13 Total: 15.49 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 4.62 Total: 1.89 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -4.34 Total: -114.23 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -73.55 2.39 -71.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014786607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.439 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds