Wall clock time and date at job start Tue Mar 31 2020 12:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99686 * 2 1 4 4 H 1.48502 * 109.47048 * 269.99506 * 3 2 1 5 5 H 1.48488 * 109.47503 * 29.99716 * 3 2 1 6 6 H 1.48501 * 109.46856 * 150.00010 * 3 2 1 7 7 C 1.38815 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00124 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00227 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47631 * 154.99859 * 10 9 7 12 12 C 1.52997 * 109.47060 * 59.99933 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00072 * 275.00191 * 14 13 12 16 16 O 1.21273 * 120.00144 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.47030 * 300.00189 * 17 15 14 19 19 C 1.53003 * 109.46962 * 59.99962 * 17 15 14 20 20 C 1.53003 * 109.46841 * 120.00466 * 19 17 15 21 21 C 1.53000 * 109.47490 * 59.99607 * 20 19 17 22 22 C 1.53001 * 109.47051 * 300.00180 * 21 20 19 23 23 C 1.52997 * 109.47250 * 180.02562 * 17 15 14 24 24 C 1.53002 * 109.47248 * 300.00022 * 23 17 15 25 25 C 1.53003 * 109.47007 * 300.00165 * 24 23 17 26 26 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 27 27 C 1.52997 * 109.47452 * 59.99536 * 26 13 12 28 28 H 0.97001 * 120.00482 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00378 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47374 * 34.99882 * 10 9 7 31 31 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.47194 * 300.00282 * 11 10 9 33 33 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 35 35 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 36 36 H 0.97007 * 119.99693 * 95.00333 * 14 13 12 37 37 H 1.09000 * 109.46964 * 240.00010 * 19 17 15 38 38 H 1.08997 * 109.47128 * 359.97438 * 19 17 15 39 39 H 1.08995 * 109.46852 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.46572 * 59.99828 * 21 20 19 41 41 H 1.09000 * 109.46920 * 180.02562 * 21 20 19 42 42 H 1.08991 * 109.46859 * 239.99798 * 22 21 20 43 43 H 1.08999 * 109.46994 * 119.99856 * 22 21 20 44 44 H 1.09005 * 109.47168 * 59.99837 * 23 17 15 45 45 H 1.08993 * 109.47126 * 179.97438 * 24 23 17 46 46 H 1.09000 * 109.46953 * 59.99779 * 24 23 17 47 47 H 1.09000 * 109.46948 * 240.00370 * 25 24 23 48 48 H 1.08997 * 109.47128 * 119.99634 * 25 24 23 49 49 H 1.09002 * 109.46935 * 299.99411 * 26 13 12 50 50 H 1.09001 * 109.46812 * 179.97438 * 26 13 12 51 51 H 1.08993 * 109.47194 * 179.97438 * 27 26 13 52 52 H 1.09002 * 109.46695 * 59.99734 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.1805 -4.7519 0.6111 12 6 -0.0972 -4.9014 -0.2171 13 6 0.2677 -5.2808 -1.6537 14 7 -0.9557 -5.4246 -2.4466 15 6 -1.6261 -6.5938 -2.4453 16 8 -1.2164 -7.5270 -1.7880 17 6 -2.8849 -6.7415 -3.2605 18 1 -3.6234 -6.0140 -2.9236 19 6 -2.5673 -6.4992 -4.7375 20 6 -2.9147 -7.7510 -5.5458 21 6 -4.4044 -8.0625 -5.3888 22 6 -4.7219 -8.3047 -3.9118 23 6 -3.4442 -8.1546 -3.0837 24 6 -2.4078 -9.1761 -3.5562 25 6 -2.0901 -8.9344 -5.0333 26 6 1.1454 -4.1857 -2.2632 27 6 2.4231 -4.0361 -1.4349 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9684 -3.5503 0.5918 31 1 1.7257 -5.6957 0.6124 32 1 0.9205 -4.4816 1.6346 33 1 -0.7227 -5.6812 0.2172 34 1 -0.6422 -3.9574 -0.2180 35 1 0.8128 -6.2248 -1.6529 36 1 -1.2832 -4.6782 -2.9727 37 1 -3.1551 -5.6567 -5.1020 38 1 -1.5062 -6.2769 -4.8492 39 1 -2.6889 -7.5782 -6.5980 40 1 -4.9920 -7.2199 -5.7533 41 1 -4.6516 -8.9545 -5.9643 42 1 -5.1200 -9.3115 -3.7863 43 1 -5.4604 -7.5773 -3.5749 44 1 -3.6705 -8.3267 -2.0314 45 1 -2.8060 -10.1828 -3.4298 46 1 -1.4973 -9.0693 -2.9666 47 1 -2.3377 -9.8263 -5.6088 48 1 -1.0288 -8.7128 -5.1451 49 1 0.6004 -3.2417 -2.2640 50 1 1.4058 -4.4562 -3.2865 51 1 3.0485 -3.2563 -1.8693 52 1 2.9681 -4.9802 -1.4341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026610321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:51 Heat of formation + Delta-G solvation = -62.963284 kcal Electronic energy + Delta-G solvation = -28580.145541 eV Core-core repulsion = 24963.591233 eV Total energy + Delta-G solvation = -3616.554308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19882 -39.16699 -37.69881 -34.63039 -32.93872 -31.66992 -31.43613 -30.91431 -30.24420 -30.00003 -27.52934 -24.04821 -23.47145 -22.67705 -22.27094 -22.16194 -21.33661 -20.13309 -18.58626 -17.34248 -17.18277 -16.68745 -16.67338 -16.13503 -15.57445 -15.24102 -14.58514 -14.36124 -14.29000 -13.79499 -13.48651 -13.27465 -12.87509 -12.71098 -12.41073 -12.34004 -12.31247 -12.21626 -12.16081 -12.12237 -11.97366 -11.71211 -11.65481 -11.59752 -10.89470 -10.89276 -10.77016 -10.60989 -10.41564 -10.26068 -10.16446 -10.07658 -10.02671 -9.99067 -9.65962 -9.49586 -9.25110 -8.87892 -8.66614 -6.93049 -5.76344 -3.03600 2.79346 3.33916 3.42629 3.48581 3.49717 4.28854 4.42294 4.46885 4.60162 4.89977 5.00770 5.07673 5.09760 5.12316 5.17209 5.19717 5.23553 5.28164 5.30912 5.38768 5.49369 5.51042 5.58695 5.61189 5.73220 5.79519 5.80579 5.85045 5.88543 5.90160 6.01552 6.02635 6.08723 6.09015 6.15384 6.16482 6.20665 6.25362 6.32279 6.43482 6.46509 6.50800 6.68829 6.73473 6.77548 6.94787 7.01250 7.09553 7.71400 7.72333 8.41715 8.43278 9.54440 10.13800 10.48872 11.46482 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.002828 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.089526 B = 9897.943953 C =10371.698413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.172 3.828 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.150 3.850 14 N -0.723 5.723 15 C 0.518 3.482 16 O -0.540 6.540 17 C -0.104 4.104 18 H 0.095 0.905 19 C -0.107 4.107 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.063 4.063 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.129 4.129 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.050 0.950 51 H 0.064 0.936 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 -17.232 -10.958 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.062 3.938 11 C -0.158 4.158 12 C -0.162 4.162 13 C 0.046 3.954 14 N -0.372 5.372 15 C 0.305 3.695 16 O -0.418 6.418 17 C -0.125 4.125 18 H 0.113 0.887 19 C -0.145 4.145 20 C -0.104 4.104 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.081 4.081 24 C -0.163 4.163 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.170 4.170 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.177 -17.755 -10.457 21.819 hybrid contribution -0.061 1.481 -0.308 1.514 sum -7.238 -16.273 -10.765 20.811 Atomic orbital electron populations 1.69650 1.05035 1.25499 1.58155 1.24702 0.95480 0.97534 1.03361 0.86230 0.78680 0.84109 0.77427 1.21872 1.21901 1.20862 1.19262 0.90992 0.84248 1.42039 0.91295 1.42490 1.05751 0.99603 1.88446 1.20245 0.94337 0.86517 0.92739 1.21735 0.96155 0.98586 0.99287 1.21807 0.98330 1.01607 0.94441 1.21024 0.84339 0.99383 0.90646 1.46214 1.27378 1.14326 1.49307 1.20575 0.85146 0.82368 0.81430 1.90599 1.68739 1.39074 1.43409 1.21352 0.95701 0.99631 0.95842 0.88701 1.21583 1.02051 0.98061 0.92828 1.21032 0.95369 0.94988 0.98974 1.21549 0.95658 1.01279 0.96585 1.21569 0.96951 1.01643 0.95058 1.20752 0.94702 0.92880 0.99803 1.21777 1.00914 0.97751 0.95862 1.21568 0.99403 0.97489 0.96680 1.21659 0.97249 0.98765 0.97803 1.22081 0.96027 0.99725 0.99124 0.93639 0.78132 0.93444 0.92482 0.91822 0.92623 0.90998 0.90300 0.76706 0.91036 0.91293 0.91133 0.92026 0.92120 0.91836 0.92018 0.90684 0.92653 0.88971 0.92371 0.92348 0.90020 0.93139 0.91767 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 2 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.25 4.28 -53.43 -0.23 -17.48 16 10 C 0.17 3.33 3.10 -67.93 -0.21 3.12 16 11 C -0.12 -2.03 5.61 -26.73 -0.15 -2.18 16 12 C -0.12 -2.06 5.32 -26.73 -0.14 -2.20 16 13 C 0.15 2.28 2.45 -67.93 -0.17 2.12 16 14 N -0.72 -9.58 4.82 -53.81 -0.26 -9.84 16 15 C 0.52 6.99 6.57 -10.98 -0.07 6.92 16 16 O -0.54 -8.94 13.32 5.56 0.07 -8.86 16 17 C -0.10 -1.08 2.56 -91.77 -0.24 -1.32 16 18 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.11 -0.96 5.21 -26.73 -0.14 -1.10 16 20 C -0.09 -0.71 3.20 -90.58 -0.29 -1.00 16 21 C -0.11 -0.86 5.71 -26.73 -0.15 -1.01 16 22 C -0.11 -0.94 5.71 -26.73 -0.15 -1.10 16 23 C -0.06 -0.64 2.36 -90.62 -0.21 -0.86 16 24 C -0.13 -1.36 5.39 -26.73 -0.14 -1.50 16 25 C -0.11 -1.07 5.71 -26.69 -0.15 -1.22 16 26 C -0.12 -1.87 5.23 -26.73 -0.14 -2.01 16 27 C -0.13 -2.22 5.61 -26.73 -0.15 -2.37 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.38 9.74 6.06 -40.82 -0.25 9.49 16 30 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.35 6.51 -51.93 -0.34 1.01 16 35 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 36 H 0.40 4.66 8.50 -40.82 -0.35 4.31 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.67 7.44 -51.93 -0.39 0.28 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.25 5.51 -51.93 -0.29 0.96 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 1.53 7.60 -51.93 -0.39 1.13 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -29.85 383.31 -11.24 -41.09 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -9.54 Total: 11.71 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.76 Total: -12.69 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.24 Total: -54.10 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.85 -11.24 -41.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026610321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.877 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds