Wall clock time and date at job start Tue Mar 31 2020 12:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99686 * 2 1 4 4 H 1.48502 * 109.47048 * 269.99506 * 3 2 1 5 5 H 1.48488 * 109.47503 * 29.99716 * 3 2 1 6 6 H 1.48501 * 109.46856 * 150.00010 * 3 2 1 7 7 C 1.38815 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00124 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00227 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47631 * 154.99859 * 10 9 7 12 12 C 1.52997 * 109.47060 * 59.99933 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00072 * 275.00191 * 14 13 12 16 16 O 1.21273 * 120.00144 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.47030 * 300.00189 * 17 15 14 19 19 C 1.53003 * 109.46962 * 59.99962 * 17 15 14 20 20 C 1.53003 * 109.46841 * 120.00466 * 19 17 15 21 21 C 1.53000 * 109.47490 * 59.99607 * 20 19 17 22 22 C 1.53001 * 109.47051 * 300.00180 * 21 20 19 23 23 C 1.52997 * 109.47250 * 180.02562 * 17 15 14 24 24 C 1.53002 * 109.47248 * 300.00022 * 23 17 15 25 25 C 1.53003 * 109.47007 * 300.00165 * 24 23 17 26 26 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 27 27 C 1.52997 * 109.47452 * 59.99536 * 26 13 12 28 28 H 0.97001 * 120.00482 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00378 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47374 * 34.99882 * 10 9 7 31 31 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.47194 * 300.00282 * 11 10 9 33 33 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 35 35 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 36 36 H 0.97007 * 119.99693 * 95.00333 * 14 13 12 37 37 H 1.09000 * 109.46964 * 240.00010 * 19 17 15 38 38 H 1.08997 * 109.47128 * 359.97438 * 19 17 15 39 39 H 1.08995 * 109.46852 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.46572 * 59.99828 * 21 20 19 41 41 H 1.09000 * 109.46920 * 180.02562 * 21 20 19 42 42 H 1.08991 * 109.46859 * 239.99798 * 22 21 20 43 43 H 1.08999 * 109.46994 * 119.99856 * 22 21 20 44 44 H 1.09005 * 109.47168 * 59.99837 * 23 17 15 45 45 H 1.08993 * 109.47126 * 179.97438 * 24 23 17 46 46 H 1.09000 * 109.46953 * 59.99779 * 24 23 17 47 47 H 1.09000 * 109.46948 * 240.00370 * 25 24 23 48 48 H 1.08997 * 109.47128 * 119.99634 * 25 24 23 49 49 H 1.09002 * 109.46935 * 299.99411 * 26 13 12 50 50 H 1.09001 * 109.46812 * 179.97438 * 26 13 12 51 51 H 1.08993 * 109.47194 * 179.97438 * 27 26 13 52 52 H 1.09002 * 109.46695 * 59.99734 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.1805 -4.7519 0.6111 12 6 -0.0972 -4.9014 -0.2171 13 6 0.2677 -5.2808 -1.6537 14 7 -0.9557 -5.4246 -2.4466 15 6 -1.6261 -6.5938 -2.4453 16 8 -1.2164 -7.5270 -1.7880 17 6 -2.8849 -6.7415 -3.2605 18 1 -3.6234 -6.0140 -2.9236 19 6 -2.5673 -6.4992 -4.7375 20 6 -2.9147 -7.7510 -5.5458 21 6 -4.4044 -8.0625 -5.3888 22 6 -4.7219 -8.3047 -3.9118 23 6 -3.4442 -8.1546 -3.0837 24 6 -2.4078 -9.1761 -3.5562 25 6 -2.0901 -8.9344 -5.0333 26 6 1.1454 -4.1857 -2.2632 27 6 2.4231 -4.0361 -1.4349 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9684 -3.5503 0.5918 31 1 1.7257 -5.6957 0.6124 32 1 0.9205 -4.4816 1.6346 33 1 -0.7227 -5.6812 0.2172 34 1 -0.6422 -3.9574 -0.2180 35 1 0.8128 -6.2248 -1.6529 36 1 -1.2832 -4.6782 -2.9727 37 1 -3.1551 -5.6567 -5.1020 38 1 -1.5062 -6.2769 -4.8492 39 1 -2.6889 -7.5782 -6.5980 40 1 -4.9920 -7.2199 -5.7533 41 1 -4.6516 -8.9545 -5.9643 42 1 -5.1200 -9.3115 -3.7863 43 1 -5.4604 -7.5773 -3.5749 44 1 -3.6705 -8.3267 -2.0314 45 1 -2.8060 -10.1828 -3.4298 46 1 -1.4973 -9.0693 -2.9666 47 1 -2.3377 -9.8263 -5.6088 48 1 -1.0288 -8.7128 -5.1451 49 1 0.6004 -3.2417 -2.2640 50 1 1.4058 -4.4562 -3.2865 51 1 3.0485 -3.2563 -1.8693 52 1 2.9681 -4.9802 -1.4341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026610321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:51 Heat of formation + Delta-G solvation = -78.880178 kcal Electronic energy + Delta-G solvation = -28580.835749 eV Core-core repulsion = 24963.591233 eV Total energy + Delta-G solvation = -3617.244516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08447 -40.35611 -38.96770 -36.10723 -34.60451 -32.76744 -32.25670 -31.66191 -31.61763 -31.51642 -29.06011 -25.67286 -24.76463 -23.56842 -23.37464 -23.15053 -22.48899 -21.23977 -20.04907 -19.21932 -18.32396 -17.57011 -17.39336 -17.16487 -16.65823 -16.39966 -16.29463 -15.72908 -15.46905 -15.34744 -15.11442 -14.39449 -14.21608 -13.75108 -13.62320 -13.55240 -13.36275 -13.05969 -13.03472 -12.92102 -12.91021 -12.85363 -12.83352 -12.82925 -12.59730 -12.54835 -12.21238 -12.03228 -11.81799 -11.70043 -11.58471 -11.37023 -11.17786 -11.00716 -10.84349 -10.75970 -10.68642 -10.30991 -9.86487 -8.92548 -7.89164 -5.15136 1.48964 1.49401 1.57547 1.72124 2.26182 2.59579 3.44004 3.51866 3.66206 3.72560 3.81240 3.91134 4.03658 4.12259 4.16659 4.27122 4.34405 4.36639 4.38671 4.42848 4.45164 4.46159 4.53336 4.58783 4.61183 4.65047 4.66646 4.72976 4.75735 4.84860 4.91900 5.00116 5.11539 5.14641 5.18082 5.20548 5.26906 5.30354 5.32545 5.34670 5.39607 5.46383 5.48780 5.51186 5.57053 5.58799 5.60387 5.64493 5.70295 6.33803 6.64768 7.34145 7.40486 8.18608 8.42583 9.34290 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.002828 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.089526 B = 9897.943953 C =10371.698413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.965 3.035 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.231 4.231 8 H 0.073 0.927 9 N -0.729 5.729 10 C 0.165 3.835 11 C -0.112 4.112 12 C -0.114 4.114 13 C 0.161 3.839 14 N -0.718 5.718 15 C 0.515 3.485 16 O -0.573 6.573 17 C -0.100 4.100 18 H 0.107 0.893 19 C -0.105 4.105 20 C -0.084 4.084 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.064 4.064 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.106 4.106 27 C -0.123 4.123 28 H 0.248 0.752 29 H 0.374 0.626 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.408 0.592 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.071 0.929 51 H 0.049 0.951 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 -17.972 -12.663 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.363 4.363 8 H 0.090 0.910 9 N -0.370 5.370 10 C 0.057 3.943 11 C -0.150 4.150 12 C -0.153 4.153 13 C 0.056 3.944 14 N -0.368 5.368 15 C 0.304 3.696 16 O -0.452 6.452 17 C -0.121 4.121 18 H 0.125 0.875 19 C -0.143 4.143 20 C -0.102 4.102 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.083 4.083 24 C -0.162 4.162 25 C -0.150 4.150 26 C -0.144 4.144 27 C -0.163 4.163 28 H 0.057 0.943 29 H 0.208 0.792 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.068 0.932 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.295 -18.519 -12.177 23.334 hybrid contribution 0.038 1.605 0.276 1.629 sum -7.257 -16.914 -11.901 21.918 Atomic orbital electron populations 1.69800 1.06361 1.25663 1.60155 1.25420 0.96271 1.00584 1.04474 0.85249 0.77678 0.80243 0.77264 1.21603 1.22647 1.19833 1.19604 0.91321 0.85374 1.39984 0.90951 1.42635 1.05456 1.00511 1.88419 1.20465 0.94063 0.85420 0.94345 1.21660 0.96109 0.98766 0.98513 1.21698 0.97850 1.00161 0.95623 1.20775 0.85052 0.98712 0.89859 1.46142 1.26831 1.14801 1.49054 1.21172 0.85756 0.81633 0.81075 1.90594 1.69740 1.40089 1.44824 1.21394 0.94112 1.00084 0.96482 0.87502 1.21610 1.01932 0.99204 0.91575 1.21058 0.95778 0.93941 0.99468 1.21549 0.95015 1.02263 0.95924 1.21550 0.95715 1.02268 0.95308 1.20751 0.95691 0.92620 0.99204 1.21709 0.99710 0.98247 0.96575 1.21555 0.99015 0.98713 0.95685 1.21523 0.96449 0.97581 0.98855 1.21963 0.96594 1.00561 0.97228 0.94295 0.79224 0.93936 0.90026 0.92815 0.92911 0.93343 0.90493 0.75664 0.89145 0.92102 0.89748 0.90797 0.91194 0.91347 0.91256 0.92598 0.92279 0.92047 0.91164 0.93481 0.92817 0.91053 0.93198 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.23 -12.47 9.93 84.04 0.83 -11.63 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.73 -35.31 4.28 -322.95 -1.38 -36.69 16 10 C 0.17 6.34 3.10 44.99 0.14 6.48 16 11 C -0.11 -3.76 5.61 30.59 0.17 -3.58 16 12 C -0.11 -3.84 5.32 30.59 0.16 -3.67 16 13 C 0.16 4.79 2.45 44.99 0.11 4.90 16 14 N -0.72 -18.63 4.82 -442.54 -2.13 -20.76 16 15 C 0.52 13.72 6.57 87.66 0.58 14.29 16 16 O -0.57 -19.13 13.32 -3.01 -0.04 -19.17 16 17 C -0.10 -1.95 2.56 -11.54 -0.03 -1.98 16 18 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 19 C -0.11 -1.66 5.21 30.60 0.16 -1.50 16 20 C -0.08 -1.19 3.20 -10.77 -0.03 -1.22 16 21 C -0.11 -1.33 5.71 30.59 0.17 -1.15 16 22 C -0.11 -1.59 5.71 30.59 0.17 -1.41 16 23 C -0.06 -1.26 2.36 -10.79 -0.03 -1.29 16 24 C -0.12 -2.66 5.39 30.60 0.16 -2.49 16 25 C -0.11 -1.94 5.71 30.62 0.17 -1.77 16 26 C -0.11 -3.30 5.23 30.60 0.16 -3.14 16 27 C -0.12 -4.08 5.61 30.59 0.17 -3.91 16 28 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.37 19.49 6.06 -92.71 -0.56 18.93 16 30 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.86 6.51 -2.39 -0.02 1.84 16 35 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 36 H 0.41 9.20 8.50 -92.70 -0.79 8.41 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.07 7.44 -2.39 -0.02 1.05 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.70 5.51 -2.39 -0.01 1.69 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.05 2.00 7.60 -2.39 -0.02 1.99 16 50 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.75 383.31 1.85 -62.90 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.46 Total: 40.60 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 3.55 Total: -16.87 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -3.23 Total: -115.23 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.04 Total: -19.17 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -64.75 1.85 -62.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026610321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.979 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds