Wall clock time and date at job start Tue Mar 31 2020 13:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47034 * 270.00489 * 3 2 1 5 5 H 1.48504 * 109.46975 * 30.00310 * 3 2 1 6 6 H 1.48498 * 109.46923 * 149.99816 * 3 2 1 7 7 C 1.38807 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99762 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47711 * 324.99682 * 10 9 7 12 12 C 1.53001 * 109.47428 * 85.00373 * 10 9 7 13 13 C 1.52992 * 109.47507 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46894 * 299.99501 * 13 12 10 15 15 H 1.09005 * 109.47245 * 300.00221 * 14 13 12 16 16 N 1.46506 * 109.47097 * 180.02562 * 14 13 12 17 17 C 1.34773 * 119.99907 * 85.00195 * 16 14 13 18 18 O 1.21289 * 120.00180 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00099 * 180.02562 * 17 16 14 20 20 H 1.08996 * 115.54980 * 51.93833 * 19 17 16 21 21 C 1.53002 * 117.49746 * 197.64544 * 19 17 16 22 22 C 1.53001 * 117.49533 * 266.26799 * 19 17 16 23 23 H 1.09008 * 117.49828 * 145.02201 * 22 19 17 24 24 C 1.52999 * 117.50048 * 0.02562 * 22 19 17 25 25 C 1.54275 * 110.02938 * 183.27390 * 24 22 19 26 26 C 1.54887 * 104.19025 * 217.10224 * 25 24 22 27 27 C 1.54885 * 102.75208 * 37.94254 * 26 25 24 28 28 C 1.53869 * 110.03423 * 66.10332 * 24 22 19 29 29 C 1.52995 * 109.47031 * 60.00249 * 14 13 12 30 30 C 1.53002 * 109.47455 * 300.00052 * 29 14 13 31 31 H 0.97002 * 119.99403 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99969 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46947 * 299.99965 * 12 10 9 34 34 H 1.09001 * 109.47239 * 59.99020 * 12 10 9 35 35 H 1.09000 * 109.47248 * 180.02562 * 13 12 10 36 36 H 1.08992 * 109.47663 * 59.99528 * 13 12 10 37 37 H 0.97000 * 120.00016 * 265.00547 * 16 14 13 38 38 H 1.09000 * 117.49695 * 214.97542 * 21 19 17 39 39 H 1.08994 * 117.49791 * 0.02562 * 21 19 17 40 40 H 1.09006 * 110.01450 * 304.70778 * 24 22 19 41 41 H 1.09001 * 110.48755 * 335.77885 * 25 24 22 42 42 H 1.09001 * 110.48480 * 98.42709 * 25 24 22 43 43 H 1.09007 * 110.75570 * 279.62720 * 26 25 24 44 44 H 1.09001 * 110.75381 * 156.26106 * 26 25 24 45 45 H 1.09006 * 110.48714 * 203.37919 * 27 26 25 46 46 H 1.08997 * 110.59952 * 80.78912 * 27 26 25 47 47 H 1.09001 * 110.03226 * 238.56778 * 28 24 22 48 48 H 1.08995 * 110.03314 * 359.95243 * 28 24 22 49 49 H 1.09005 * 109.47342 * 179.97438 * 29 14 13 50 50 H 1.09005 * 109.47129 * 59.99900 * 29 14 13 51 51 H 1.09005 * 109.46828 * 300.00032 * 30 29 14 52 52 H 1.08994 * 109.47648 * 180.02562 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0017 11 1 2.9683 -3.5503 -0.5918 12 6 2.4230 -4.0363 1.4349 13 6 3.1885 -5.3609 1.4337 14 6 2.3114 -6.4563 0.8240 15 1 1.4010 -6.5632 1.4140 16 7 3.0442 -7.7249 0.8234 17 6 3.0359 -8.5084 1.9199 18 8 2.4222 -8.1631 2.9075 19 6 3.7902 -9.8131 1.9195 20 1 4.8349 -9.7520 1.6146 21 6 3.4262 -10.8398 2.9939 22 6 3.0158 -11.0766 1.5391 23 1 3.5512 -11.8471 0.9841 24 6 1.5351 -10.9187 1.1875 25 6 0.9070 -12.3008 0.9130 26 6 -0.0873 -12.0424 -0.2462 27 6 0.6709 -11.0168 -1.1248 28 6 1.3851 -10.1023 -0.1081 29 6 1.9464 -6.0769 -0.6125 30 6 1.1809 -4.7521 -0.6114 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 3.0483 -3.2561 1.8691 34 1 1.5127 -4.1427 2.0250 35 1 3.4481 -5.6315 2.4571 36 1 4.0987 -5.2540 0.8437 37 1 3.5353 -8.0009 0.0338 38 1 4.2316 -11.4545 3.3960 39 1 2.6410 -10.5718 3.7007 40 1 1.0086 -10.4240 2.0038 41 1 1.6726 -13.0138 0.6071 42 1 0.3787 -12.6618 1.7954 43 1 -1.0171 -11.6158 0.1303 44 1 -0.2794 -12.9601 -0.8021 45 1 -0.0296 -10.4408 -1.7296 46 1 1.3983 -11.5206 -1.7613 47 1 0.7850 -9.2119 0.0791 48 1 2.3670 -9.8179 -0.4860 49 1 1.3219 -6.8574 -1.0470 50 1 2.8567 -5.9699 -1.2025 51 1 0.2706 -4.8591 -0.0214 52 1 0.9205 -4.4820 -1.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034766713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:04 Heat of formation + Delta-G solvation = -37.021344 kcal Electronic energy + Delta-G solvation = -27883.464420 eV Core-core repulsion = 24268.035039 eV Total energy + Delta-G solvation = -3615.429381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.57629 -38.81429 -37.78553 -35.92585 -34.77306 -32.97559 -30.64175 -30.38185 -29.05261 -28.87992 -27.52722 -24.59591 -23.23354 -22.34889 -22.25055 -20.95483 -20.88252 -20.53012 -19.75263 -19.08094 -17.26630 -16.91409 -16.37910 -16.12372 -15.57012 -15.15267 -14.89576 -14.38074 -14.26759 -13.81867 -13.70112 -13.59714 -13.51497 -13.05267 -12.91586 -12.53044 -12.28500 -12.06957 -11.98663 -11.78986 -11.57728 -11.41025 -11.33846 -11.29362 -11.01413 -10.96142 -10.80112 -10.74707 -10.68891 -10.65189 -10.42032 -10.26337 -10.16342 -10.06967 -9.77357 -9.72653 -9.54082 -8.90650 -8.81597 -6.91695 -5.73517 -3.01840 2.52153 3.08920 3.45068 3.49776 3.50336 3.52010 4.19297 4.30740 4.37644 4.57290 4.61430 4.67663 4.72076 4.89321 5.00936 5.09528 5.11000 5.19631 5.25946 5.31660 5.34008 5.42699 5.46280 5.50508 5.54612 5.56996 5.64232 5.66938 5.71196 5.75607 5.76437 5.83924 5.88078 5.90827 5.93673 5.99336 6.06011 6.10253 6.16783 6.27342 6.31213 6.34174 6.51897 6.59995 6.69859 6.75721 7.01889 7.17978 7.52792 7.72964 8.25851 8.45549 9.56336 10.15261 10.49714 11.49325 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.002524 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.722199 B =11090.103491 C =11856.517627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.178 3.822 11 H 0.045 0.955 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.147 3.853 15 H 0.086 0.914 16 N -0.720 5.720 17 C 0.546 3.454 18 O -0.539 6.539 19 C -0.191 4.191 20 H 0.124 0.876 21 C -0.146 4.146 22 C -0.118 4.118 23 H 0.111 0.889 24 C -0.069 4.069 25 C -0.114 4.114 26 C -0.127 4.127 27 C -0.124 4.124 28 C -0.117 4.117 29 C -0.118 4.118 30 C -0.120 4.120 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.061 0.939 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -28.239 -1.009 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.063 0.937 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.043 3.957 15 H 0.104 0.896 16 N -0.370 5.370 17 C 0.332 3.668 18 O -0.415 6.415 19 C -0.212 4.212 20 H 0.142 0.858 21 C -0.183 4.183 22 C -0.137 4.137 23 H 0.129 0.871 24 C -0.088 4.088 25 C -0.152 4.152 26 C -0.164 4.164 27 C -0.162 4.162 28 C -0.155 4.155 29 C -0.156 4.156 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.230 0.770 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.080 0.920 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.474 -27.805 -0.300 28.340 hybrid contribution 0.610 0.939 -0.294 1.157 sum 6.084 -26.866 -0.594 27.553 Atomic orbital electron populations 1.69668 1.05083 1.25564 1.57919 1.24739 0.95509 0.97648 1.03214 0.86212 0.78667 0.84005 0.77460 1.21784 1.21813 1.20813 1.19239 0.90952 0.84175 1.42341 0.91259 1.42433 1.05789 0.99812 1.88558 1.20228 0.94246 0.85955 0.92774 0.93672 1.22218 0.99740 0.94540 1.00789 1.21893 0.98571 0.95417 1.00398 1.21082 0.95400 0.81875 0.97345 0.89622 1.46135 1.53257 1.21701 1.15938 1.19514 0.80266 0.84149 0.82855 1.90713 1.43737 1.73743 1.33334 1.22338 1.00551 0.89809 1.08536 0.85827 1.23069 1.03711 0.99580 0.91947 1.22539 0.95658 0.96825 0.98634 0.87055 1.21457 0.92564 0.96388 0.98353 1.22383 0.98229 0.96235 0.98350 1.22508 0.98376 0.98935 0.96606 1.22359 0.99044 0.97234 0.97563 1.22236 1.00708 0.98238 0.94283 1.21741 1.00763 0.98189 0.94938 1.21749 0.98927 0.93532 1.01702 0.93569 0.78318 0.91883 0.92547 0.92454 0.92389 0.76952 0.88133 0.87578 0.90544 0.91475 0.91736 0.91518 0.91722 0.91732 0.91797 0.91575 0.91622 0.91909 0.91654 0.92037 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.26 5.12 -53.43 -0.27 -18.53 16 10 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.44 5.50 -26.73 -0.15 -2.59 16 13 C -0.12 -1.86 5.49 -26.73 -0.15 -2.01 16 14 C 0.15 1.93 2.45 -67.93 -0.17 1.76 16 15 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 16 N -0.72 -7.61 4.09 -53.80 -0.22 -7.83 16 17 C 0.55 6.60 5.66 -10.99 -0.06 6.53 16 18 O -0.54 -8.89 16.07 5.55 0.09 -8.80 16 19 C -0.19 -1.67 5.99 -91.77 -0.55 -2.22 16 20 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.15 -1.21 9.69 -26.73 -0.26 -1.47 16 22 C -0.12 -0.87 4.84 -90.62 -0.44 -1.31 16 23 H 0.11 0.64 7.91 -51.92 -0.41 0.23 16 24 C -0.07 -0.58 2.44 -89.50 -0.22 -0.79 16 25 C -0.11 -0.80 6.36 -25.07 -0.16 -0.96 16 26 C -0.13 -0.88 6.91 -24.74 -0.17 -1.06 16 27 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16 28 C -0.12 -0.97 4.88 -25.61 -0.13 -1.09 16 29 C -0.12 -1.44 5.39 -26.73 -0.14 -1.58 16 30 C -0.12 -1.92 5.39 -26.73 -0.14 -2.07 16 31 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.38 10.27 7.80 -40.82 -0.32 9.96 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 3.15 8.11 -40.82 -0.33 2.82 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 1.09 7.73 -51.93 -0.40 0.68 16 40 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 41 H 0.07 0.41 7.70 -51.93 -0.40 0.01 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.49 6.50 -51.93 -0.34 0.16 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -32.07 400.94 -11.73 -43.80 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -9.73 Total: 9.39 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.34 Total: -13.89 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.23 Total: -54.12 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.07 -11.73 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034766713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.774 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds