Wall clock time and date at job start Tue Mar 31 2020 13:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47300 * 240.00429 * 3 2 1 5 5 H 1.48498 * 109.47301 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46795 * 120.00703 * 3 2 1 7 7 C 1.38812 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00408 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.47075 * 125.63323 * 0.03098 * 9 7 2 11 11 C 1.54459 * 107.30280 * 178.97233 * 10 9 7 12 12 C 1.54397 * 102.86852 * 338.50056 * 11 10 9 13 13 C 1.47576 * 125.62501 * 179.97438 * 9 7 2 14 14 C 1.52105 * 110.51290 * 276.65252 * 12 11 10 15 15 C 1.53338 * 109.44870 * 295.89068 * 14 12 11 16 16 N 1.46926 * 108.69364 * 306.70914 * 15 14 12 17 17 C 1.34774 * 120.55743 * 234.37514 * 16 15 14 18 18 O 1.21282 * 120.00143 * 174.55552 * 17 16 15 19 19 C 1.50702 * 120.00030 * 354.54343 * 17 16 15 20 20 C 1.52994 * 109.47413 * 214.68411 * 19 17 16 21 21 C 1.53004 * 109.47287 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.46969 * 59.99657 * 21 20 19 23 23 C 1.52994 * 109.47396 * 300.00276 * 22 21 20 24 24 C 1.53001 * 109.46859 * 94.68059 * 19 17 16 25 25 C 1.46938 * 118.89069 * 54.35008 * 16 15 14 26 26 C 1.52104 * 110.50426 * 152.62421 * 12 11 10 27 27 H 0.96999 * 120.00146 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.87934 * 59.54443 * 10 9 7 29 29 H 1.08999 * 109.88039 * 298.39690 * 10 9 7 30 30 H 1.09002 * 110.73776 * 220.15472 * 11 10 9 31 31 H 1.08998 * 110.73671 * 96.84348 * 11 10 9 32 32 H 1.09006 * 110.37623 * 84.52979 * 13 9 7 33 33 H 1.09003 * 110.38005 * 322.18699 * 13 9 7 34 34 H 1.09004 * 109.47231 * 55.88687 * 14 12 11 35 35 H 1.09001 * 109.47304 * 175.89598 * 14 12 11 36 36 H 1.09005 * 109.59482 * 186.95102 * 15 14 12 37 37 H 1.08994 * 109.59914 * 66.47528 * 15 14 12 38 38 H 1.09009 * 109.47074 * 334.68010 * 19 17 16 39 39 H 1.09002 * 109.46789 * 300.00221 * 20 19 17 40 40 H 1.08997 * 109.47502 * 59.99825 * 20 19 17 41 41 H 1.08995 * 109.46980 * 299.99667 * 21 20 19 42 42 H 1.08997 * 109.46953 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.47127 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.46953 * 59.99931 * 22 21 20 45 45 H 1.09011 * 109.47184 * 300.00177 * 23 22 21 46 46 H 1.08997 * 109.47502 * 180.02562 * 23 22 21 47 47 H 1.08997 * 109.46896 * 299.99787 * 24 19 17 48 48 H 1.08995 * 109.47262 * 60.00269 * 24 19 17 49 49 H 1.08997 * 109.60401 * 185.88178 * 25 16 15 50 50 H 1.09000 * 109.60185 * 65.39784 * 25 16 15 51 51 H 1.09003 * 109.47536 * 184.09330 * 26 12 11 52 52 H 1.09004 * 109.47843 * 304.10710 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1381 -2.5323 -0.0006 11 6 -0.4506 -4.0447 -0.0271 12 6 0.8504 -4.6549 -0.5918 13 6 1.9345 -3.7322 -0.0016 14 6 0.8555 -4.5863 -2.1113 15 6 -0.2812 -5.4536 -2.6653 16 7 -0.1631 -6.8036 -2.0976 17 6 -0.1072 -7.8831 -2.9026 18 8 0.0893 -8.9826 -2.4299 19 6 -0.2890 -7.7239 -4.3901 20 6 -1.0201 -8.9465 -4.9483 21 6 -1.2042 -8.7851 -6.4586 22 6 0.1656 -8.6600 -7.1288 23 6 0.8967 -7.4375 -6.5706 24 6 1.0805 -7.5984 -5.0607 25 6 -0.1065 -6.9571 -0.6373 26 6 1.0294 -6.0813 -0.0950 27 1 -0.4850 0.8400 0.0004 28 1 -0.5579 -2.0516 -0.8844 29 1 -0.5549 -2.0835 0.9010 30 1 -1.2928 -4.2534 -0.6868 31 1 -0.6459 -4.4161 0.9789 32 1 2.1807 -4.0382 1.0153 33 1 2.8260 -3.7446 -0.6288 34 1 0.7125 -3.5534 -2.4289 35 1 1.8099 -4.9537 -2.4885 36 1 -0.2052 -5.5058 -3.7515 37 1 -1.2414 -5.0213 -2.3840 38 1 -0.8754 -6.8271 -4.5906 39 1 -0.4339 -9.8432 -4.7477 40 1 -1.9957 -9.0359 -4.4705 41 1 -1.7902 -7.8884 -6.6595 42 1 -1.7246 -9.6564 -6.8563 43 1 0.0345 -8.5455 -8.2048 44 1 0.7516 -9.5568 -6.9278 45 1 0.3106 -6.5405 -6.7714 46 1 1.8723 -7.3480 -7.0483 47 1 1.6012 -6.7274 -4.6631 48 1 1.6667 -8.4951 -4.8603 49 1 0.0845 -8.0005 -0.3864 50 1 -1.0531 -6.6407 -0.1994 51 1 1.9862 -6.4701 -0.4436 52 1 1.0080 -6.0920 0.9948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035155342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:26 Heat of formation + Delta-G solvation = -35.944115 kcal Electronic energy + Delta-G solvation = -28835.541783 eV Core-core repulsion = 25220.159114 eV Total energy + Delta-G solvation = -3615.382669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70833 -39.07824 -37.57999 -35.72714 -33.14425 -31.86178 -30.98902 -30.59162 -30.50489 -28.72061 -26.77839 -24.51601 -23.64436 -23.20173 -22.83685 -22.10337 -20.29161 -20.07881 -19.35013 -17.88955 -17.15912 -16.51671 -16.18350 -15.21229 -15.11322 -15.03186 -14.57036 -14.38425 -14.29584 -14.06664 -13.81446 -13.59925 -13.29352 -12.90109 -12.79281 -12.67730 -12.44476 -12.25453 -12.12671 -11.88307 -11.69502 -11.45381 -11.32667 -11.08869 -11.04602 -10.92749 -10.85881 -10.73692 -10.60303 -10.53685 -10.33917 -10.19397 -10.04603 -9.78587 -9.67130 -9.55108 -9.49007 -8.58981 -8.47292 -6.80684 -5.70364 -3.03146 2.64382 3.04417 3.40054 3.44705 3.45588 4.33110 4.45014 4.50194 4.51805 4.80279 4.90222 4.93700 4.98402 5.04812 5.11934 5.19295 5.23022 5.26557 5.29398 5.37274 5.40407 5.49755 5.51710 5.56326 5.62471 5.73829 5.79117 5.81082 5.83731 5.87499 5.95540 5.96682 5.99845 6.02076 6.05343 6.12338 6.19490 6.21774 6.23128 6.32876 6.46786 6.56852 6.63908 6.67065 6.84441 6.96111 7.48025 7.57155 7.64337 7.83582 8.22070 8.27150 9.23684 9.84006 10.50900 11.41107 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.003097 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.810391 B = 9037.868357 C = 9808.653758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.137 4.137 12 C -0.071 4.071 13 C 0.146 3.854 14 C -0.110 4.110 15 C 0.103 3.897 16 N -0.606 5.606 17 C 0.519 3.481 18 O -0.550 6.550 19 C -0.107 4.107 20 C -0.102 4.102 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.108 4.108 25 C 0.113 3.887 26 C -0.115 4.115 27 H 0.252 0.748 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 -16.322 -11.300 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.355 4.355 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.056 3.944 11 C -0.175 4.175 12 C -0.072 4.072 13 C 0.020 3.980 14 C -0.148 4.148 15 C -0.019 4.019 16 N -0.339 5.339 17 C 0.307 3.693 18 O -0.428 6.428 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.009 4.009 26 C -0.154 4.154 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.571 -16.649 -11.033 20.138 hybrid contribution 0.450 1.152 0.164 1.248 sum -2.121 -15.497 -10.870 19.047 Atomic orbital electron populations 1.69953 1.04822 1.25017 1.57225 1.24770 0.95688 0.97544 1.02424 0.86230 0.78464 0.83374 0.77872 1.21224 1.21647 1.21267 1.19006 0.90360 0.82517 1.43625 0.90663 1.44498 1.01642 0.99761 1.87144 1.21134 0.84280 0.88258 1.00764 1.22934 0.95748 0.99522 0.99305 1.21018 0.97922 0.93568 0.94682 1.21472 0.93959 0.85969 0.96597 1.21619 0.97385 1.00631 0.95131 1.21970 1.00131 0.81539 0.98258 1.48184 1.72157 1.06631 1.06878 1.20655 0.75842 0.83889 0.88868 1.90648 1.49585 1.25664 1.76945 1.21383 0.99078 1.01018 0.91354 1.21388 1.00217 0.97299 0.95044 1.21542 0.97212 1.01892 0.94960 1.21559 0.96337 0.98514 0.99455 1.21517 1.00694 0.98424 0.94864 1.21458 0.94950 1.02821 0.95328 1.21632 0.99047 1.01085 0.79138 1.21720 0.98199 0.94831 1.00634 0.93799 0.93760 0.94310 0.92280 0.92600 0.96485 0.94588 0.89350 0.92224 0.89881 0.90880 0.89017 0.90765 0.91897 0.91876 0.91774 0.92014 0.91916 0.91667 0.91598 0.91319 0.91225 0.89497 0.91423 0.91994 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.22 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -14.95 3.39 -170.32 -0.58 -15.53 16 10 C 0.18 4.21 5.00 -2.96 -0.01 4.19 16 11 C -0.14 -2.40 4.92 -25.23 -0.12 -2.53 16 12 C -0.07 -1.15 0.55 -154.11 -0.08 -1.23 16 13 C 0.15 2.94 6.15 -2.87 -0.02 2.92 16 14 C -0.11 -1.63 4.85 -27.01 -0.13 -1.76 16 15 C 0.10 1.26 5.85 -3.63 -0.02 1.24 16 16 N -0.61 -7.89 2.96 -172.58 -0.51 -8.40 16 17 C 0.52 7.00 6.69 -10.99 -0.07 6.93 16 18 O -0.55 -9.18 15.68 5.56 0.09 -9.10 16 19 C -0.11 -1.11 1.72 -91.77 -0.16 -1.26 16 20 C -0.10 -0.98 4.86 -26.73 -0.13 -1.11 16 21 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 22 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 23 C -0.12 -0.92 5.92 -26.76 -0.16 -1.07 16 24 C -0.11 -1.03 5.10 -26.75 -0.14 -1.17 16 25 C 0.11 1.50 6.17 -3.63 -0.02 1.48 16 26 C -0.12 -1.61 4.84 -27.01 -0.13 -1.74 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.04 1.14 7.38 -51.92 -0.38 0.75 16 29 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 30 H 0.06 0.94 6.18 -51.93 -0.32 0.62 16 31 H 0.06 0.95 7.98 -51.93 -0.41 0.53 16 32 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 33 H 0.04 0.72 8.02 -51.93 -0.42 0.30 16 34 H 0.09 1.53 7.82 -51.93 -0.41 1.13 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.85 5.41 -51.93 -0.28 0.57 16 37 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 38 H 0.09 0.85 6.18 -51.92 -0.32 0.53 16 39 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.09 1.21 6.99 -51.93 -0.36 0.84 16 50 H 0.07 0.86 7.62 -51.93 -0.40 0.46 16 51 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 52 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -30.81 380.58 -10.95 -41.76 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -9.46 Total: -1.36 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.77 Total: -3.91 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.52 Total: -50.02 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.81 -10.95 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035155342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.819 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds