Wall clock time and date at job start Tue Mar 31 2020 13:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48500 * 109.47081 * 274.98660 * 3 2 1 5 5 H 1.48507 * 109.47026 * 34.98364 * 3 2 1 6 6 H 1.48499 * 109.47342 * 154.98271 * 3 2 1 7 7 C 1.38810 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 186.71035 * 7 2 1 9 9 N 1.36944 * 119.99764 * 6.71914 * 7 2 1 10 10 C 1.47428 * 126.05649 * 353.95728 * 9 7 2 11 11 C 1.54504 * 107.15001 * 181.61902 * 10 9 7 12 12 C 1.56020 * 102.61943 * 22.82507 * 11 10 9 13 13 H 1.09001 * 112.89299 * 202.90903 * 12 11 10 14 14 C 1.52727 * 106.47153 * 78.39876 * 12 11 10 15 15 N 1.46530 * 110.47021 * 203.09807 * 14 12 11 16 16 C 1.34781 * 121.01373 * 235.56163 * 15 14 12 17 17 O 1.21283 * 119.99771 * 359.97438 * 16 15 14 18 18 C 1.50691 * 119.99863 * 179.71604 * 16 15 14 19 19 C 1.53008 * 109.47170 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47276 * 180.02562 * 19 18 16 21 21 C 1.54264 * 110.03277 * 292.16569 * 20 19 18 22 22 C 1.54887 * 104.19694 * 217.10472 * 21 20 19 23 23 C 1.54891 * 102.74414 * 37.94359 * 22 21 20 24 24 C 1.53877 * 110.02836 * 174.99891 * 20 19 18 25 25 C 1.47144 * 117.97126 * 55.28408 * 15 14 12 26 26 C 1.53042 * 107.68948 * 302.83486 * 25 15 14 27 27 C 1.46471 * 126.05148 * 173.98159 * 9 7 2 28 28 H 1.08998 * 108.34005 * 269.12883 * 27 9 7 29 29 H 0.97005 * 119.99836 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.90219 * 300.99373 * 10 9 7 31 31 H 1.08998 * 109.90619 * 62.05675 * 10 9 7 32 32 H 1.08992 * 110.78128 * 141.11247 * 11 10 9 33 33 H 1.09001 * 110.77706 * 264.35450 * 11 10 9 34 34 H 1.08999 * 109.25321 * 82.76802 * 14 12 11 35 35 H 1.08995 * 109.17983 * 323.37778 * 14 12 11 36 36 H 1.08998 * 109.47773 * 299.99667 * 18 16 15 37 37 H 1.08997 * 109.47088 * 60.00571 * 18 16 15 38 38 H 1.09003 * 109.46888 * 300.00575 * 19 18 16 39 39 H 1.09001 * 109.47136 * 60.00108 * 19 18 16 40 40 H 1.09003 * 110.01332 * 53.60697 * 20 19 18 41 41 H 1.09006 * 110.48405 * 335.78797 * 21 20 19 42 42 H 1.08996 * 110.48307 * 98.42411 * 21 20 19 43 43 H 1.08994 * 110.75895 * 279.62752 * 22 21 20 44 44 H 1.09005 * 110.75511 * 156.25059 * 22 21 20 45 45 H 1.09003 * 110.48246 * 203.37801 * 23 22 21 46 46 H 1.08998 * 110.60160 * 80.79492 * 23 22 21 47 47 H 1.09001 * 110.02740 * 238.56598 * 24 20 19 48 48 H 1.08992 * 110.03740 * 359.95131 * 24 20 19 49 49 H 1.09006 * 109.81312 * 62.38460 * 25 15 14 50 50 H 1.09003 * 109.81378 * 183.28664 * 25 15 14 51 51 H 1.09000 * 109.14614 * 174.82112 * 26 25 15 52 52 H 1.09005 * 109.14930 * 294.03429 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0847 -1.2054 0.1098 9 7 1.3325 -2.3841 -0.1377 10 6 -0.1325 -2.5455 -0.1703 11 6 -0.4214 -4.0578 -0.2994 12 6 0.8855 -4.7033 0.2569 13 1 1.0437 -5.7194 -0.1044 14 6 0.7960 -4.6192 1.7792 15 7 2.1335 -4.6756 2.3751 16 6 2.4422 -5.6039 3.3022 17 8 1.6068 -6.4091 3.6555 18 6 3.8268 -5.6451 3.8953 19 6 3.9118 -6.7841 4.9135 20 6 5.3175 -6.8255 5.5162 21 6 6.3402 -7.2526 4.4431 22 6 7.3503 -8.1394 5.2126 23 6 6.4416 -8.9177 6.1963 24 6 5.3820 -7.8843 6.6310 25 6 3.1312 -3.6917 1.9259 26 6 3.2750 -3.8346 0.4090 27 6 1.9348 -3.7117 -0.2789 28 1 2.0722 -3.9148 -1.3409 29 1 -0.4850 0.8401 0.0004 30 1 -0.5687 -2.1620 0.7521 31 1 -0.5458 -2.0117 -1.0260 32 1 -1.2812 -4.3405 0.3079 33 1 -0.5790 -4.3337 -1.3421 34 1 0.1997 -5.4525 2.1508 35 1 0.3156 -3.6815 2.0584 36 1 4.5567 -5.8114 3.1031 37 1 4.0381 -4.6977 4.3910 38 1 3.1819 -6.6183 5.7058 39 1 3.7007 -7.7314 4.4174 40 1 5.5812 -5.8462 5.9156 41 1 5.8504 -7.8266 3.6564 42 1 6.8407 -6.3796 4.0243 43 1 8.0692 -7.5250 5.7546 44 1 7.8594 -8.8234 4.5336 45 1 7.0163 -9.2599 7.0570 46 1 5.9681 -9.7618 5.6950 47 1 5.6779 -7.4188 7.5711 48 1 4.4117 -8.3679 6.7432 49 1 2.7939 -2.6848 2.1720 50 1 4.0885 -3.8897 2.4082 51 1 3.9403 -3.0549 0.0380 52 1 3.7050 -4.8099 0.1808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036634159.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:31 Heat of formation + Delta-G solvation = -36.052976 kcal Electronic energy + Delta-G solvation = -28410.491509 eV Core-core repulsion = 24795.104119 eV Total energy + Delta-G solvation = -3615.387389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.15157 -38.80099 -37.99768 -34.95116 -33.31908 -32.68882 -31.60925 -29.51216 -28.95709 -28.38738 -27.32153 -25.25924 -24.18413 -22.80892 -22.48311 -20.89996 -20.06107 -19.72584 -19.39022 -18.07583 -16.86846 -16.34925 -16.12396 -15.58296 -15.41534 -15.21729 -14.91259 -14.40688 -14.04159 -13.88470 -13.60707 -13.53171 -13.15916 -12.92806 -12.64573 -12.40305 -12.13567 -12.10532 -11.56715 -11.44181 -11.40289 -11.31915 -11.21568 -11.13278 -11.09983 -10.88518 -10.79135 -10.77719 -10.67176 -10.64835 -10.46273 -10.17177 -10.02054 -9.92103 -9.64374 -9.61098 -9.38598 -8.60990 -8.14433 -6.83469 -5.75618 -3.07414 2.92843 3.36530 3.37162 3.41597 3.44426 4.37009 4.42971 4.45852 4.50274 4.79566 4.97238 5.06778 5.17651 5.20337 5.24671 5.33153 5.37709 5.40670 5.45183 5.48583 5.52011 5.53453 5.55508 5.60583 5.66318 5.68386 5.75495 5.79292 5.89033 5.90228 5.97494 6.03765 6.07731 6.11348 6.14889 6.20500 6.28009 6.31508 6.34257 6.36687 6.44406 6.54897 6.71885 6.78118 6.90012 6.97267 7.53013 7.61202 7.79102 7.83966 8.22298 8.49591 9.17561 9.80234 10.48555 11.36922 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.003039 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.479414 B = 9212.668218 C =10075.056002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.126 3.874 15 N -0.601 5.601 16 C 0.511 3.489 17 O -0.558 6.558 18 C -0.139 4.139 19 C -0.094 4.094 20 C -0.094 4.094 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.122 4.122 25 C 0.113 3.887 26 C -0.129 4.129 27 C 0.171 3.829 28 H 0.017 0.983 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.075 0.925 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.003 -14.070 8.335 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.094 0.906 14 C 0.004 3.996 15 N -0.333 5.333 16 C 0.299 3.701 17 O -0.437 6.437 18 C -0.179 4.179 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.010 4.010 26 C -0.168 4.168 27 C 0.063 3.937 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.107 0.893 50 H 0.091 0.909 51 H 0.094 0.906 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.495 -14.227 8.543 19.635 hybrid contribution 0.418 1.130 -0.215 1.224 sum 10.914 -13.097 8.328 18.974 Atomic orbital electron populations 1.69971 1.04909 1.25009 1.56599 1.24796 0.95616 0.97551 1.02292 0.86191 0.78665 0.83959 0.77485 1.21724 1.21894 1.20658 1.18953 0.90959 0.82312 1.43154 0.90324 1.44319 1.01442 1.00342 1.85809 1.21250 0.84417 0.88374 1.00833 1.23129 0.95942 0.99338 0.99704 1.22655 0.97810 0.98251 0.94946 0.90613 1.21400 0.83175 1.02754 0.92279 1.48113 1.13752 1.31638 1.39793 1.20650 0.90091 0.80151 0.79175 1.90643 1.51015 1.40232 1.61806 1.21709 0.94854 1.01255 1.00062 1.21461 0.95724 0.98135 0.97885 1.21829 0.94984 0.99015 0.95392 1.22495 0.96362 0.99403 0.97738 1.22497 0.97535 0.98358 0.97956 1.22356 0.97009 0.98052 0.98860 1.22208 0.99351 0.96350 0.98007 1.21786 0.90764 0.93424 0.94980 1.21592 0.99214 1.00951 0.95051 1.20227 0.90758 0.86802 0.95923 0.96567 0.93783 0.93918 0.93674 0.92056 0.92354 0.90419 0.90553 0.89107 0.89188 0.91367 0.91261 0.91024 0.91372 0.91663 0.91677 0.91826 0.92052 0.91737 0.92027 0.91547 0.89324 0.90935 0.90610 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.06 10.42 55.49 0.58 -25.49 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 21.27 29.56 -169.99 -5.02 16.24 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.23 -5.77 9.03 -15.06 -0.14 -5.90 16 8 H 0.08 1.91 6.66 -52.49 -0.35 1.57 16 9 N -0.59 -13.92 3.12 -164.50 -0.51 -14.44 16 10 C 0.18 4.09 4.65 -2.75 -0.01 4.08 16 11 C -0.14 -2.62 6.28 -24.33 -0.15 -2.77 16 12 C -0.12 -2.05 3.84 -88.63 -0.34 -2.39 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C 0.13 2.27 5.44 -4.17 -0.02 2.25 16 15 N -0.60 -9.97 2.94 -173.29 -0.51 -10.48 16 16 C 0.51 8.15 7.71 -10.99 -0.08 8.06 16 17 O -0.56 -10.62 15.41 5.55 0.09 -10.54 16 18 C -0.14 -1.62 3.91 -27.88 -0.11 -1.73 16 19 C -0.09 -1.03 3.63 -26.73 -0.10 -1.13 16 20 C -0.09 -0.83 2.93 -89.50 -0.26 -1.09 16 21 C -0.12 -1.01 5.53 -25.07 -0.14 -1.15 16 22 C -0.13 -0.94 6.91 -24.74 -0.17 -1.11 16 23 C -0.13 -0.95 6.83 -25.07 -0.17 -1.12 16 24 C -0.12 -1.01 6.46 -25.61 -0.17 -1.17 16 25 C 0.11 1.77 6.27 -3.67 -0.02 1.75 16 26 C -0.13 -2.12 5.16 -27.65 -0.14 -2.26 16 27 C 0.17 3.31 2.85 -68.37 -0.19 3.11 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.04 1.10 7.16 -51.93 -0.37 0.73 16 31 H 0.05 1.18 7.42 -51.93 -0.39 0.79 16 32 H 0.06 1.04 7.97 -51.93 -0.41 0.62 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 35 H 0.08 1.55 6.79 -51.93 -0.35 1.20 16 36 H 0.09 0.93 7.15 -51.93 -0.37 0.56 16 37 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 38 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.60 7.76 -51.93 -0.40 0.19 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 49 H 0.09 1.65 7.48 -51.93 -0.39 1.26 16 50 H 0.07 0.90 5.99 -51.93 -0.31 0.59 16 51 H 0.08 1.28 7.02 -51.93 -0.36 0.91 16 52 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -29.52 383.58 -11.43 -40.95 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -9.50 Total: 0.78 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.32 Total: -2.82 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.45 Total: -50.40 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.52 -11.43 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036634159.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.896 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds