Wall clock time and date at job start Tue Mar 31 2020 13:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99652 * 2 1 4 4 H 1.48503 * 109.47213 * 269.99996 * 3 2 1 5 5 H 1.48498 * 109.47224 * 29.99854 * 3 2 1 6 6 H 1.48498 * 109.46927 * 150.00376 * 3 2 1 7 7 C 1.38806 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00129 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.48166 * 126.40174 * 359.97438 * 9 7 2 11 11 C 1.55284 * 107.03948 * 184.95246 * 10 9 7 12 12 C 1.53743 * 101.84522 * 22.48462 * 11 10 9 13 13 H 1.09006 * 111.29615 * 78.94326 * 12 11 10 14 14 C 1.52228 * 114.75616 * 207.21848 * 12 11 10 15 15 N 1.47724 * 106.36008 * 169.60388 * 14 12 11 16 16 C 1.34777 * 119.68851 * 127.96315 * 15 14 12 17 17 O 1.21283 * 119.99679 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00136 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46960 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47068 * 180.02562 * 19 18 16 21 21 C 1.54265 * 110.02991 * 292.90528 * 20 19 18 22 22 C 1.54969 * 104.16133 * 217.13745 * 21 20 19 23 23 C 1.54887 * 102.77474 * 37.88549 * 22 21 20 24 24 C 1.53872 * 110.03556 * 175.68866 * 20 19 18 25 25 C 1.46603 * 120.62585 * 307.94294 * 15 14 12 26 26 C 1.53953 * 110.58129 * 47.82199 * 25 15 14 27 27 C 1.45473 * 126.40714 * 180.02562 * 9 7 2 28 28 H 1.09001 * 109.27069 * 266.18150 * 27 9 7 29 29 H 0.97001 * 120.00322 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.91364 * 304.30043 * 10 9 7 31 31 H 1.08999 * 109.92214 * 65.60183 * 10 9 7 32 32 H 1.09004 * 110.95605 * 140.62428 * 11 10 9 33 33 H 1.09000 * 110.95343 * 264.34498 * 11 10 9 34 34 H 1.08999 * 110.07633 * 288.81531 * 14 12 11 35 35 H 1.08998 * 110.07013 * 50.29120 * 14 12 11 36 36 H 1.09006 * 109.46868 * 299.99681 * 18 16 15 37 37 H 1.08996 * 109.46996 * 59.99668 * 18 16 15 38 38 H 1.09006 * 109.46835 * 299.99414 * 19 18 16 39 39 H 1.08989 * 109.47433 * 59.99700 * 19 18 16 40 40 H 1.09005 * 110.01860 * 54.29013 * 20 19 18 41 41 H 1.09000 * 110.48843 * 335.78237 * 21 20 19 42 42 H 1.09001 * 110.49226 * 98.42402 * 21 20 19 43 43 H 1.09004 * 110.71580 * 279.57158 * 22 21 20 44 44 H 1.08993 * 110.76664 * 156.22437 * 22 21 20 45 45 H 1.08999 * 110.48504 * 203.40930 * 23 22 21 46 46 H 1.08997 * 110.48320 * 80.76481 * 23 22 21 47 47 H 1.09004 * 110.03166 * 238.56968 * 24 20 19 48 48 H 1.09005 * 110.02821 * 359.94385 * 24 20 19 49 49 H 1.08992 * 109.25293 * 168.10061 * 25 15 14 50 50 H 1.08997 * 109.25323 * 287.53920 * 25 15 14 51 51 H 1.08998 * 109.87842 * 189.48751 * 26 25 15 52 52 H 1.09000 * 109.88547 * 68.40645 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1467 -2.5534 0.0005 11 6 -0.4338 -4.0740 0.1287 12 6 0.8685 -4.5887 0.7632 13 1 0.8918 -4.3911 1.8350 14 6 1.2011 -6.0403 0.4477 15 7 2.5825 -6.2632 0.9214 16 6 2.8487 -7.3017 1.7382 17 8 1.9562 -8.0482 2.0805 18 6 4.2552 -7.5352 2.2261 19 6 4.2830 -8.7690 3.1305 20 6 5.7109 -9.0058 3.6264 21 6 6.6198 -9.4088 2.4470 22 6 7.5798 -10.4645 3.0516 23 6 6.6580 -11.2545 4.0135 24 6 5.7354 -10.1785 4.6223 25 6 3.6666 -5.3657 0.5111 26 6 3.2477 -3.8948 0.6877 27 6 1.9080 -3.7211 0.0016 28 1 1.9901 -4.0787 -1.0248 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5801 -2.0209 0.8471 31 1 -0.5630 -2.1741 -0.9327 32 1 -1.2854 -4.2561 0.7844 33 1 -0.5947 -4.5243 -0.8508 34 1 0.5141 -6.7042 0.9724 35 1 1.1401 -6.2130 -0.6268 36 1 4.9139 -7.6960 1.3726 37 1 4.5942 -6.6648 2.7878 38 1 3.6243 -8.6087 3.9841 39 1 3.9442 -9.6392 2.5685 40 1 6.0950 -8.1035 4.1024 41 1 6.0292 -9.8470 1.6425 42 1 7.1794 -8.5465 2.0844 43 1 8.3879 -9.9812 3.6008 44 1 7.9763 -11.1168 2.2737 45 1 7.2458 -11.7386 4.7934 46 1 6.0733 -11.9910 3.4624 47 1 6.1321 -9.8456 5.5815 48 1 4.7298 -10.5783 4.7531 49 1 4.5477 -5.5641 1.1212 50 1 3.9069 -5.5477 -0.5364 51 1 3.9878 -3.2407 0.2268 52 1 3.1539 -3.6608 1.7481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036634160.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:34 Heat of formation + Delta-G solvation = -34.765861 kcal Electronic energy + Delta-G solvation = -27852.749136 eV Core-core repulsion = 24237.417560 eV Total energy + Delta-G solvation = -3615.331576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.29519 -38.83327 -38.06391 -35.35135 -33.42758 -32.60113 -31.54819 -29.86078 -29.01938 -28.55094 -27.62146 -24.95433 -24.03456 -22.70956 -22.30263 -20.95723 -20.09420 -19.81203 -19.67990 -18.70127 -17.10146 -16.30190 -16.14443 -15.79596 -15.47934 -15.13917 -14.97977 -14.43664 -14.17523 -13.91095 -13.61297 -13.55228 -13.28614 -13.04383 -12.86017 -12.47277 -12.42784 -12.18438 -11.66847 -11.57467 -11.43865 -11.41102 -11.37505 -11.27707 -11.01473 -10.89945 -10.83695 -10.80763 -10.74711 -10.68622 -10.53721 -10.16209 -10.08998 -9.89423 -9.64356 -9.57329 -9.44289 -8.63838 -8.47004 -6.85031 -5.72909 -3.06224 2.74798 3.11641 3.38090 3.42817 3.45121 4.29543 4.35817 4.41060 4.47532 4.65633 4.86636 4.94485 5.03707 5.06865 5.18443 5.22401 5.25664 5.33400 5.35518 5.38907 5.42414 5.43923 5.51375 5.55414 5.60499 5.61353 5.63413 5.69220 5.80564 5.83546 5.89430 5.90331 5.99439 6.04059 6.05526 6.12378 6.15830 6.18417 6.23721 6.26986 6.36723 6.50930 6.61846 6.63829 6.84908 7.06312 7.53341 7.54917 7.60965 7.79776 8.23075 8.29888 9.17871 9.81593 10.49904 11.39598 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002570 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.687018 B =10893.653480 C =11793.553872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.126 3.874 15 N -0.609 5.609 16 C 0.510 3.490 17 O -0.551 6.551 18 C -0.141 4.141 19 C -0.095 4.095 20 C -0.094 4.094 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.122 4.122 25 C 0.111 3.889 26 C -0.130 4.130 27 C 0.167 3.833 28 H 0.019 0.981 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.076 0.924 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.063 -19.055 4.793 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.097 0.903 14 C 0.004 3.996 15 N -0.341 5.341 16 C 0.299 3.701 17 O -0.429 6.429 18 C -0.181 4.181 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.012 4.012 26 C -0.169 4.169 27 C 0.059 3.941 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.536 -19.172 4.956 22.917 hybrid contribution 0.472 1.167 -0.088 1.262 sum 12.008 -18.005 4.868 22.183 Atomic orbital electron populations 1.69940 1.04893 1.25041 1.56986 1.24798 0.95683 0.97646 1.02356 0.86153 0.78577 0.83683 0.77542 1.21646 1.21721 1.20729 1.18985 0.90331 0.82318 1.43749 0.90400 1.44213 1.01669 0.99466 1.86592 1.21533 0.83926 0.88329 1.00949 1.22716 0.95838 0.99655 0.99307 1.22620 0.97777 0.93386 1.00600 0.90287 1.21577 0.81936 0.96999 0.99065 1.48358 1.09764 1.27812 1.48216 1.20753 0.91135 0.80259 0.78002 1.90661 1.48052 1.46476 1.57733 1.21754 0.94434 1.00615 1.01247 1.21467 0.95658 0.96955 0.99216 1.21829 0.95243 0.98400 0.95768 1.22510 0.97233 0.98601 0.97653 1.22513 0.97735 0.97591 0.98540 1.22357 0.97593 0.97741 0.98600 1.22208 1.00055 0.95403 0.98263 1.21798 0.88888 0.90416 1.00143 1.21898 0.99484 0.93555 1.02011 1.20625 0.91142 0.87224 0.95127 0.96372 0.93750 0.92730 0.94367 0.92078 0.92360 0.89352 0.91493 0.89057 0.88956 0.91276 0.91223 0.90985 0.91407 0.91665 0.91654 0.91814 0.91988 0.91731 0.91973 0.91529 0.90193 0.91732 0.90551 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.44 55.49 0.58 -26.27 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.08 9.88 -15.06 -0.15 -6.22 16 8 H 0.08 2.00 7.21 -52.48 -0.38 1.62 16 9 N -0.59 -14.72 3.35 -163.10 -0.55 -15.26 16 10 C 0.18 4.25 5.45 -1.91 -0.01 4.24 16 11 C -0.14 -2.54 6.54 -25.13 -0.16 -2.71 16 12 C -0.12 -2.21 2.86 -89.38 -0.26 -2.46 16 13 H 0.08 1.54 8.12 -51.93 -0.42 1.12 16 14 C 0.13 1.96 5.96 -3.77 -0.02 1.93 16 15 N -0.61 -8.67 3.00 -172.49 -0.52 -9.19 16 16 C 0.51 7.23 7.67 -10.99 -0.08 7.15 16 17 O -0.55 -9.64 15.34 5.56 0.09 -9.56 16 18 C -0.14 -1.42 3.88 -27.88 -0.11 -1.53 16 19 C -0.10 -0.94 3.63 -26.73 -0.10 -1.04 16 20 C -0.09 -0.75 2.93 -89.50 -0.26 -1.01 16 21 C -0.12 -0.89 5.50 -25.03 -0.14 -1.03 16 22 C -0.13 -0.85 6.91 -24.70 -0.17 -1.02 16 23 C -0.13 -0.87 6.83 -25.08 -0.17 -1.04 16 24 C -0.12 -0.93 6.46 -25.62 -0.17 -1.09 16 25 C 0.11 1.40 6.21 -3.49 -0.02 1.38 16 26 C -0.13 -2.14 5.48 -26.99 -0.15 -2.28 16 27 C 0.17 3.29 2.57 -67.99 -0.17 3.12 16 28 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 31 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 34 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.09 0.77 7.33 -51.93 -0.38 0.39 16 37 H 0.09 0.84 7.55 -51.93 -0.39 0.45 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.07 0.76 7.98 -51.94 -0.41 0.34 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.52 7.77 -51.93 -0.40 0.12 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 49 H 0.08 0.79 5.84 -51.93 -0.30 0.49 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 52 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -31.04 388.23 -11.47 -42.52 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -9.66 Total: -0.91 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.24 Total: -3.94 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.48 Total: -50.72 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.04 -11.47 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036634160.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.751 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds