Wall clock time and date at job start Tue Mar 31 2020 13:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00623 * 2 1 4 4 H 1.48502 * 109.47571 * 274.80659 * 3 2 1 5 5 H 1.48502 * 109.46883 * 34.80223 * 3 2 1 6 6 H 1.48500 * 109.47200 * 154.79840 * 3 2 1 7 7 C 1.38816 * 119.99488 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00009 * 188.10521 * 7 2 1 9 9 N 1.36938 * 120.00197 * 8.09914 * 7 2 1 10 10 C 1.48157 * 126.40086 * 7.57641 * 9 7 2 11 11 C 1.55298 * 107.03817 * 175.03099 * 10 9 7 12 12 C 1.53736 * 101.84371 * 337.52270 * 11 10 9 13 13 H 1.09002 * 111.30732 * 281.04388 * 12 11 10 14 14 C 1.52236 * 114.75126 * 153.65114 * 12 11 10 15 15 N 1.48102 * 106.16796 * 191.10686 * 14 12 11 16 16 C 1.34778 * 119.01452 * 231.25944 * 15 14 12 17 17 O 1.21277 * 120.00578 * 359.45323 * 16 15 14 18 18 C 1.50706 * 119.99442 * 179.46111 * 16 15 14 19 19 C 1.53006 * 109.46857 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.46966 * 179.97438 * 19 18 16 21 21 C 1.54263 * 110.03523 * 292.16770 * 20 19 18 22 22 C 1.54887 * 104.19482 * 217.10718 * 21 20 19 23 23 C 1.54889 * 102.75181 * 37.93857 * 22 21 20 24 24 C 1.53877 * 110.03091 * 174.99700 * 20 19 18 25 25 C 1.46587 * 121.29658 * 50.70371 * 15 14 12 26 26 C 1.53959 * 110.58378 * 312.74220 * 25 15 14 27 27 C 1.45474 * 126.40569 * 187.52063 * 9 7 2 28 28 H 1.08998 * 109.27080 * 93.83173 * 27 9 7 29 29 H 0.97009 * 119.99621 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.91968 * 55.68635 * 10 9 7 31 31 H 1.08990 * 109.92274 * 294.37976 * 10 9 7 32 32 H 1.09001 * 110.95320 * 219.38346 * 11 10 9 33 33 H 1.08996 * 110.95158 * 95.66593 * 11 10 9 34 34 H 1.09000 * 110.06883 * 308.66737 * 14 12 11 35 35 H 1.08997 * 110.07346 * 70.24120 * 14 12 11 36 36 H 1.08997 * 109.46891 * 299.99212 * 18 16 15 37 37 H 1.08994 * 109.47383 * 59.99804 * 18 16 15 38 38 H 1.08997 * 109.46968 * 299.99460 * 19 18 16 39 39 H 1.08997 * 109.47424 * 59.99537 * 19 18 16 40 40 H 1.09001 * 110.01384 * 53.61065 * 20 19 18 41 41 H 1.09000 * 110.48039 * 335.78056 * 21 20 19 42 42 H 1.08996 * 110.48806 * 98.42369 * 21 20 19 43 43 H 1.09000 * 110.75911 * 279.62329 * 22 21 20 44 44 H 1.09005 * 110.75364 * 156.25302 * 22 21 20 45 45 H 1.08998 * 110.49045 * 203.37732 * 23 22 21 46 46 H 1.09004 * 110.59813 * 80.78806 * 23 22 21 47 47 H 1.09000 * 110.03018 * 238.56934 * 24 20 19 48 48 H 1.09002 * 110.03396 * 359.95371 * 24 20 19 49 49 H 1.08999 * 109.25826 * 192.45606 * 25 15 14 50 50 H 1.09000 * 109.22487 * 73.00331 * 25 15 14 51 51 H 1.08998 * 109.88243 * 291.58865 * 26 25 15 52 52 H 1.09005 * 109.88092 * 170.50588 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3963 2.1050 -1.3951 5 1 1.5022 2.6211 0.7991 6 1 3.5949 1.4127 0.5962 7 6 2.0101 -1.2022 -0.0005 8 1 3.0820 -1.2071 0.1313 9 7 1.3356 -2.3821 -0.1681 10 6 -0.0968 -2.5345 -0.5144 11 6 -0.3574 -4.0521 -0.7158 12 6 1.0535 -4.5755 -1.0302 13 1 1.3292 -4.3738 -2.0654 14 6 1.2853 -6.0372 -0.6735 15 7 2.7440 -6.2643 -0.7918 16 6 3.1864 -7.3016 -1.5298 17 8 2.3936 -8.0385 -2.0769 18 6 4.6664 -7.5460 -1.6751 19 6 4.8962 -8.7760 -2.5555 20 6 6.3987 -9.0237 -2.7035 21 6 7.0424 -7.8905 -3.5289 22 6 8.1184 -8.6064 -4.3825 23 6 7.4277 -9.9423 -4.7532 24 6 6.6437 -10.3283 -3.4820 25 6 3.7084 -5.3781 -0.1336 26 6 3.3537 -3.9028 -0.3947 27 6 1.8918 -3.7203 -0.0406 28 1 1.7280 -4.0827 0.9742 29 1 -0.4850 0.8402 0.0004 30 1 -0.3156 -1.9946 -1.4357 31 1 -0.7175 -2.1556 0.2975 32 1 -1.0327 -4.2238 -1.5541 33 1 -0.7471 -4.5050 0.1958 34 1 0.9837 -6.2230 0.3573 35 1 0.7238 -6.6811 -1.3504 36 1 5.1347 -6.6763 -2.1359 37 1 5.1048 -7.7164 -0.6918 38 1 4.4280 -9.6456 -2.0943 39 1 4.4577 -8.6061 -3.5388 40 1 6.8658 -9.0823 -1.7204 41 1 6.2995 -7.4167 -4.1705 42 1 7.5047 -7.1546 -2.8710 43 1 9.0194 -8.7871 -3.7963 44 1 8.3482 -8.0289 -5.2780 45 1 8.1712 -10.7037 -4.9889 46 1 6.7472 -9.8020 -5.5931 47 1 7.2304 -11.0195 -2.8769 48 1 5.6921 -10.7853 -3.7536 49 1 4.7066 -5.5818 -0.5212 50 1 3.6944 -5.5664 0.9399 51 1 3.5131 -3.6638 -1.4461 52 1 3.9701 -3.2570 0.2308 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036634161.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:37 Heat of formation + Delta-G solvation = -35.359164 kcal Electronic energy + Delta-G solvation = -27904.011353 eV Core-core repulsion = 24288.654049 eV Total energy + Delta-G solvation = -3615.357303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.28303 -38.82303 -38.06156 -35.34034 -33.42471 -32.60637 -31.55504 -29.87112 -29.00874 -28.54536 -27.62428 -24.96305 -24.02273 -22.70600 -22.31993 -20.93848 -20.11261 -19.79282 -19.70082 -18.69066 -17.09743 -16.27724 -16.18356 -15.68696 -15.52105 -15.21405 -14.93954 -14.37092 -14.22180 -13.86590 -13.71889 -13.58152 -13.22274 -13.03834 -12.76975 -12.60162 -12.42047 -12.16693 -11.75061 -11.53404 -11.49080 -11.36704 -11.33403 -11.25415 -11.01029 -10.88064 -10.85989 -10.80841 -10.73373 -10.69966 -10.52909 -10.17086 -10.10670 -9.93285 -9.64503 -9.55258 -9.45286 -8.64746 -8.46483 -6.83656 -5.74066 -3.07877 2.74860 3.10981 3.37951 3.42949 3.45345 4.30406 4.37007 4.41630 4.47286 4.66104 4.85890 4.96936 5.01614 5.07231 5.19827 5.20537 5.28514 5.32597 5.35270 5.40539 5.43008 5.43840 5.51506 5.54344 5.60145 5.62934 5.63422 5.70229 5.79880 5.85318 5.89482 5.90627 5.99991 6.03351 6.07456 6.11373 6.15176 6.17463 6.22799 6.27546 6.36546 6.50718 6.59173 6.62450 6.83387 7.05522 7.47083 7.54105 7.63920 7.77469 8.22438 8.29721 9.16338 9.80992 10.49840 11.38445 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002715 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.403957 B =10308.715300 C =11422.871628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.135 4.135 12 C -0.124 4.124 13 H 0.077 0.923 14 C 0.127 3.873 15 N -0.610 5.610 16 C 0.509 3.491 17 O -0.551 6.551 18 C -0.141 4.141 19 C -0.095 4.095 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.121 4.121 25 C 0.113 3.887 26 C -0.131 4.131 27 C 0.168 3.832 28 H 0.019 0.981 29 H 0.252 0.748 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.808 -18.079 -4.303 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.096 0.904 14 C 0.006 3.994 15 N -0.343 5.343 16 C 0.297 3.703 17 O -0.430 6.430 18 C -0.181 4.181 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.010 4.010 26 C -0.170 4.170 27 C 0.059 3.941 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.329 -18.198 -4.527 22.443 hybrid contribution 0.451 1.143 0.084 1.232 sum 12.781 -17.055 -4.443 21.770 Atomic orbital electron populations 1.69954 1.04955 1.25081 1.56508 1.24807 0.95618 0.97719 1.02278 0.86149 0.78678 0.83760 0.77474 1.21707 1.21789 1.20614 1.18983 0.90906 0.82623 1.43047 0.90440 1.44178 1.06407 0.99462 1.81719 1.21524 0.85290 0.88512 0.99645 1.22696 0.94969 0.99499 1.00243 1.22613 0.97927 0.93370 1.00529 0.90428 1.21651 0.79515 0.96778 1.01496 1.48486 1.07501 1.28126 1.50151 1.20769 0.91278 0.80348 0.77890 1.90659 1.57688 1.47013 1.47601 1.21759 0.93291 1.00776 1.02277 1.21471 0.94692 0.96883 1.00256 1.21825 0.95502 0.94784 0.99070 1.22502 0.97899 0.97364 0.98308 1.22496 0.98047 0.96245 0.99567 1.22359 0.98948 0.97165 0.97842 1.22208 1.00318 0.97065 0.96311 1.21786 0.91535 0.90509 0.97202 1.21901 0.99106 0.93572 1.02418 1.20583 0.91199 0.87240 0.95027 0.96347 0.93758 0.94641 0.92696 0.92122 0.92181 0.91696 0.89056 0.88879 0.89178 0.91349 0.91168 0.91064 0.91309 0.91647 0.91677 0.91758 0.92019 0.91696 0.92030 0.91549 0.90158 0.91688 0.91485 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.66 55.49 0.59 -26.18 16 2 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 3 Si 0.91 21.78 29.56 -169.99 -5.03 16.75 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.12 9.88 -15.06 -0.15 -6.27 16 8 H 0.08 1.99 7.18 -52.49 -0.38 1.62 16 9 N -0.59 -14.66 3.35 -163.09 -0.55 -15.21 16 10 C 0.17 4.18 5.46 -1.91 -0.01 4.17 16 11 C -0.14 -2.51 6.53 -25.13 -0.16 -2.68 16 12 C -0.12 -2.20 2.81 -89.38 -0.25 -2.45 16 13 H 0.08 1.49 8.12 -51.93 -0.42 1.06 16 14 C 0.13 1.97 5.96 -3.55 -0.02 1.95 16 15 N -0.61 -8.65 3.02 -172.18 -0.52 -9.17 16 16 C 0.51 7.18 7.66 -10.98 -0.08 7.10 16 17 O -0.55 -9.60 15.33 5.56 0.09 -9.52 16 18 C -0.14 -1.42 3.88 -27.88 -0.11 -1.53 16 19 C -0.10 -0.94 3.63 -26.73 -0.10 -1.03 16 20 C -0.09 -0.74 2.93 -89.50 -0.26 -1.00 16 21 C -0.12 -0.95 5.53 -25.07 -0.14 -1.09 16 22 C -0.13 -0.89 6.91 -24.74 -0.17 -1.06 16 23 C -0.13 -0.90 6.83 -25.07 -0.17 -1.07 16 24 C -0.12 -0.92 6.46 -25.61 -0.17 -1.08 16 25 C 0.11 1.42 6.22 -3.49 -0.02 1.40 16 26 C -0.13 -2.13 5.45 -26.98 -0.15 -2.28 16 27 C 0.17 3.30 2.58 -67.98 -0.18 3.13 16 28 H 0.02 0.39 7.96 -51.93 -0.41 -0.02 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 31 H 0.05 1.46 7.25 -51.93 -0.38 1.08 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.09 1.46 7.06 -51.93 -0.37 1.09 16 36 H 0.09 0.85 6.91 -51.93 -0.36 0.49 16 37 H 0.09 0.75 7.99 -51.93 -0.41 0.34 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.58 7.76 -51.93 -0.40 0.18 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 49 H 0.08 0.79 5.83 -51.93 -0.30 0.49 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 52 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -31.05 388.63 -11.47 -42.52 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -9.68 Total: -0.95 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.23 Total: -4.11 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.47 Total: -50.56 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.05 -11.47 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036634161.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.159 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds