Wall clock time and date at job start Tue Mar 31 2020 13:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48504 * 109.46932 * 274.41784 * 3 2 1 5 5 H 1.48498 * 109.47275 * 34.41252 * 3 2 1 6 6 H 1.48502 * 109.47471 * 154.41712 * 3 2 1 7 7 C 1.38819 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00413 * 188.79048 * 7 2 1 9 9 N 1.36940 * 119.99501 * 8.78310 * 7 2 1 10 10 C 1.46881 * 125.45623 * 9.39664 * 9 7 2 11 11 C 1.54228 * 106.55710 * 161.34526 * 10 9 7 12 12 C 1.54120 * 103.29040 * 27.30488 * 11 10 9 13 13 H 1.09007 * 106.39790 * 87.91767 * 12 11 10 14 14 C 1.48953 * 112.13820 * 204.36862 * 12 11 10 15 15 N 1.44365 * 117.19957 * 132.48623 * 14 12 11 16 16 C 1.34778 * 118.26037 * 175.20736 * 15 14 12 17 17 O 1.21275 * 120.00118 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00211 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47262 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46949 * 179.97438 * 19 18 16 21 21 C 1.54266 * 110.03472 * 292.90702 * 20 19 18 22 22 C 1.54969 * 104.15944 * 217.13943 * 21 20 19 23 23 C 1.54891 * 102.77919 * 37.88546 * 22 21 20 24 24 C 1.53881 * 110.03189 * 175.68906 * 20 19 18 25 25 C 1.45941 * 123.48237 * 355.18193 * 15 14 12 26 26 C 1.53142 * 108.19922 * 328.98568 * 25 15 14 27 27 C 1.47285 * 125.45328 * 189.37003 * 9 7 2 28 28 H 1.08999 * 109.62989 * 62.72098 * 27 9 7 29 29 H 0.96995 * 119.99370 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.04654 * 280.63313 * 10 9 7 31 31 H 1.09000 * 110.04984 * 42.06246 * 10 9 7 32 32 H 1.09002 * 110.63872 * 145.78532 * 11 10 9 33 33 H 1.08996 * 110.64472 * 268.84773 * 11 10 9 34 34 H 1.09000 * 107.63264 * 10.76926 * 14 12 11 35 35 H 1.08997 * 108.18254 * 254.64437 * 14 12 11 36 36 H 1.09004 * 109.46943 * 300.00334 * 18 16 15 37 37 H 1.09003 * 109.47098 * 59.99310 * 18 16 15 38 38 H 1.08998 * 109.47093 * 299.99605 * 19 18 16 39 39 H 1.09002 * 109.47053 * 59.99893 * 19 18 16 40 40 H 1.08996 * 110.01945 * 54.29704 * 20 19 18 41 41 H 1.08999 * 110.48424 * 335.78433 * 21 20 19 42 42 H 1.08994 * 110.48999 * 98.42577 * 21 20 19 43 43 H 1.08993 * 110.71833 * 279.56833 * 22 21 20 44 44 H 1.08997 * 110.75987 * 156.22031 * 22 21 20 45 45 H 1.08994 * 110.48640 * 203.40721 * 23 22 21 46 46 H 1.08998 * 110.48529 * 80.75920 * 23 22 21 47 47 H 1.09001 * 110.03217 * 238.57198 * 24 20 19 48 48 H 1.09004 * 110.02913 * 359.94929 * 24 20 19 49 49 H 1.09000 * 109.72038 * 209.30629 * 25 15 14 50 50 H 1.09009 * 109.71730 * 88.65928 * 25 15 14 51 51 H 1.09003 * 109.61739 * 302.19192 * 26 25 15 52 52 H 1.09008 * 109.76464 * 181.75717 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4043 2.1003 -1.3960 5 1 1.4975 2.6239 0.7912 6 1 3.5914 1.4150 0.6046 7 6 2.0103 -1.2022 0.0005 8 1 3.0808 -1.2076 0.1435 9 7 1.3376 -2.3812 -0.1800 10 6 -0.0713 -2.5063 -0.5758 11 6 -0.2527 -3.9427 -1.1073 12 6 0.8338 -4.7379 -0.3573 13 1 0.3840 -5.0643 0.5805 14 6 1.2375 -5.9684 -1.0932 15 7 2.6523 -6.2142 -1.2416 16 6 3.0425 -7.3690 -1.8166 17 8 2.2130 -8.1694 -2.1933 18 6 4.5097 -7.6656 -1.9917 19 6 4.6776 -9.0289 -2.6655 20 6 6.1671 -9.3297 -2.8437 21 6 6.7857 -8.3506 -3.8628 22 6 7.8070 -9.2138 -4.6460 23 6 7.0791 -10.5752 -4.7727 24 6 6.3538 -10.7436 -3.4216 25 6 3.6826 -5.2784 -0.8024 26 6 3.1241 -3.8581 -0.9295 27 6 1.9112 -3.7269 -0.0090 28 1 2.2212 -3.8639 1.0270 29 1 -0.4849 0.8401 -0.0004 30 1 -0.7176 -2.3426 0.2865 31 1 -0.3047 -1.7857 -1.3596 32 1 -1.2451 -4.3208 -0.8619 33 1 -0.0819 -3.9787 -2.1832 34 1 0.8006 -5.9151 -2.0903 35 1 0.8000 -6.8276 -0.5849 36 1 4.9645 -6.8947 -2.6138 37 1 4.9965 -7.6794 -1.0165 38 1 4.2227 -9.8000 -2.0437 39 1 4.1909 -9.0146 -3.6407 40 1 6.6817 -9.2466 -1.8865 41 1 6.0190 -7.9641 -4.5342 42 1 7.2909 -7.5333 -3.3484 43 1 8.7332 -9.3221 -4.0818 44 1 8.0004 -8.7861 -5.6297 45 1 7.7987 -11.3800 -4.9223 46 1 6.3596 -10.5483 -5.5911 47 1 6.9597 -11.3464 -2.7452 48 1 5.3833 -11.2157 -3.5742 49 1 4.5669 -5.3835 -1.4309 50 1 3.9432 -5.4795 0.2368 51 1 2.8226 -3.6743 -1.9607 52 1 3.8856 -3.1351 -0.6367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036634162.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:41 Heat of formation + Delta-G solvation = -36.829542 kcal Electronic energy + Delta-G solvation = -27846.346493 eV Core-core repulsion = 24230.925430 eV Total energy + Delta-G solvation = -3615.421064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.43323 -38.85161 -38.11337 -35.44113 -33.49583 -32.77118 -31.69880 -29.94034 -29.02949 -28.60493 -27.75421 -25.15258 -24.10711 -22.74378 -22.64757 -20.95605 -20.36779 -19.78832 -19.42282 -17.84958 -17.07138 -17.00393 -16.24594 -15.84512 -15.47424 -15.32008 -14.85707 -14.76959 -14.37402 -13.78593 -13.59492 -13.54973 -13.22918 -13.09227 -12.69865 -12.51098 -12.44987 -12.13990 -11.69270 -11.57379 -11.48386 -11.37191 -11.36170 -11.26616 -11.08715 -10.96569 -10.87787 -10.78857 -10.75737 -10.73696 -10.53117 -10.26460 -10.10597 -9.84341 -9.68807 -9.65018 -9.53464 -8.60212 -8.38118 -6.84922 -5.77146 -3.10528 2.73634 3.15705 3.36939 3.42069 3.44446 4.30328 4.36241 4.41037 4.45076 4.66009 4.87147 4.95677 5.02768 5.10651 5.17335 5.19388 5.22351 5.29814 5.33567 5.37455 5.39837 5.43321 5.44001 5.50269 5.54837 5.62265 5.65273 5.69909 5.82329 5.84492 5.89666 5.92235 5.99563 6.06449 6.07871 6.09374 6.11708 6.19146 6.26272 6.28056 6.38906 6.54718 6.61204 6.77950 6.87952 7.00998 7.49939 7.52399 7.59506 7.77058 8.23363 8.30403 9.17327 9.78746 10.45251 11.35482 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002599 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.241599 B =10772.272407 C =11821.074376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.174 3.826 11 C -0.135 4.135 12 C -0.101 4.101 13 H 0.063 0.937 14 C 0.142 3.858 15 N -0.597 5.597 16 C 0.504 3.496 17 O -0.549 6.549 18 C -0.139 4.139 19 C -0.095 4.095 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.121 4.121 25 C 0.107 3.893 26 C -0.138 4.138 27 C 0.174 3.826 28 H 0.034 0.966 29 H 0.253 0.747 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.456 -18.118 -5.678 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.049 3.951 11 C -0.174 4.174 12 C -0.121 4.121 13 H 0.082 0.918 14 C 0.019 3.981 15 N -0.330 5.330 16 C 0.292 3.708 17 O -0.427 6.427 18 C -0.179 4.179 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.016 4.016 26 C -0.177 4.177 27 C 0.066 3.934 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.899 -18.257 -5.808 22.553 hybrid contribution 0.380 1.077 0.158 1.153 sum 12.279 -17.180 -5.650 21.860 Atomic orbital electron populations 1.69978 1.04966 1.25164 1.56266 1.24832 0.95623 0.97805 1.02080 0.86137 0.78686 0.83634 0.77500 1.21645 1.21786 1.20584 1.18974 0.91017 0.82547 1.43128 0.90515 1.44480 1.08165 0.99371 1.79934 1.21112 0.85740 0.90117 0.98102 1.22847 0.96698 0.98699 0.99193 1.20730 0.97903 0.94053 0.99405 0.91798 1.19912 0.80285 0.97224 1.00726 1.47335 1.06977 1.18964 1.59714 1.20783 0.91543 0.80988 0.77491 1.90665 1.54785 1.47272 1.50028 1.21749 0.93289 0.99816 1.03027 1.21471 0.94950 0.95421 1.01487 1.21825 0.95704 0.94745 0.98913 1.22516 0.98264 0.97635 0.97656 1.22512 0.98199 0.95589 1.00073 1.22359 0.99057 0.97280 0.97613 1.22209 1.00621 0.96580 0.96498 1.21698 0.90073 0.90355 0.99519 1.22278 1.00035 0.93382 1.02053 1.20218 0.91162 0.86205 0.95785 0.94855 0.93710 0.95062 0.92199 0.91908 0.92370 0.92457 0.92224 0.88864 0.89075 0.91328 0.91183 0.91028 0.91339 0.91621 0.91673 0.91774 0.91997 0.91706 0.92013 0.91547 0.90575 0.91857 0.91417 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.60 55.49 0.59 -25.92 16 2 C -0.01 -0.18 5.42 -17.43 -0.09 -0.27 16 3 Si 0.91 21.59 29.56 -169.99 -5.03 16.57 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.23 -6.08 9.72 -15.05 -0.15 -6.23 16 8 H 0.08 1.96 7.31 -52.49 -0.38 1.57 16 9 N -0.60 -14.52 3.14 -164.81 -0.52 -15.04 16 10 C 0.17 4.14 5.38 -3.19 -0.02 4.13 16 11 C -0.14 -2.52 6.38 -25.50 -0.16 -2.68 16 12 C -0.10 -1.76 2.70 -92.63 -0.25 -2.01 16 13 H 0.06 1.09 8.10 -51.92 -0.42 0.67 16 14 C 0.14 2.25 5.19 -7.17 -0.04 2.21 16 15 N -0.60 -8.66 3.14 -178.12 -0.56 -9.22 16 16 C 0.50 7.15 7.60 -10.98 -0.08 7.07 16 17 O -0.55 -9.63 15.75 5.56 0.09 -9.54 16 18 C -0.14 -1.39 4.01 -27.88 -0.11 -1.50 16 19 C -0.10 -0.93 3.63 -26.73 -0.10 -1.03 16 20 C -0.09 -0.73 2.93 -89.50 -0.26 -0.99 16 21 C -0.12 -0.92 5.50 -25.03 -0.14 -1.06 16 22 C -0.13 -0.87 6.91 -24.69 -0.17 -1.04 16 23 C -0.13 -0.88 6.83 -25.07 -0.17 -1.05 16 24 C -0.12 -0.91 6.46 -25.61 -0.17 -1.07 16 25 C 0.11 1.38 5.92 -4.27 -0.03 1.35 16 26 C -0.14 -2.29 5.21 -26.75 -0.14 -2.43 16 27 C 0.17 3.40 3.22 -68.20 -0.22 3.18 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.03 0.82 7.85 -51.93 -0.41 0.41 16 31 H 0.06 1.58 7.16 -51.93 -0.37 1.21 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 34 H 0.06 0.96 7.31 -51.93 -0.38 0.58 16 35 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 36 H 0.09 0.83 6.64 -51.93 -0.34 0.48 16 37 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.07 0.77 7.98 -51.93 -0.41 0.36 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.56 7.77 -51.93 -0.40 0.15 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.52 7.67 -51.93 -0.40 0.13 16 49 H 0.08 0.79 6.20 -51.93 -0.32 0.46 16 50 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 51 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 52 H 0.08 1.31 7.49 -51.92 -0.39 0.92 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -30.61 387.68 -11.55 -42.16 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.67 Total: -1.40 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.29 Total: -3.44 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.49 Total: -50.18 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.61 -11.55 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036634162.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.326 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds