Wall clock time and date at job start Tue Mar 31 2020 13:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48506 * 109.47237 * 274.98443 * 3 2 1 5 5 H 1.48508 * 109.46964 * 34.98126 * 3 2 1 6 6 H 1.48494 * 109.47363 * 154.98358 * 3 2 1 7 7 C 1.38813 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99715 * 187.35683 * 7 2 1 9 9 N 1.36937 * 120.00313 * 7.35787 * 7 2 1 10 10 C 1.47404 * 125.97852 * 355.64646 * 9 7 2 11 11 C 1.54801 * 107.07326 * 176.71098 * 10 9 7 12 12 C 1.54482 * 101.84717 * 337.29212 * 11 10 9 13 13 H 1.09004 * 108.72401 * 283.50191 * 12 11 10 14 14 C 1.49894 * 112.95213 * 161.70732 * 12 11 10 15 15 N 1.43984 * 116.19167 * 263.92619 * 14 12 11 16 16 C 1.34775 * 116.40658 * 182.80937 * 15 14 12 17 17 O 1.21286 * 119.99355 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00355 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47221 * 180.02562 * 18 16 15 20 20 C 1.52991 * 109.47554 * 295.00510 * 19 18 16 21 21 C 1.52998 * 109.47510 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47041 * 59.99968 * 21 20 19 23 23 C 1.53000 * 109.47082 * 300.00278 * 22 21 20 24 24 C 1.53005 * 109.46895 * 174.99974 * 19 18 16 25 25 C 1.44345 * 127.19347 * 2.79939 * 15 14 12 26 26 C 1.51589 * 113.05033 * 7.60541 * 25 15 14 27 27 C 1.48634 * 125.98325 * 175.64037 * 9 7 2 28 28 H 1.08994 * 112.30920 * 329.81550 * 27 9 7 29 29 H 0.96992 * 119.99978 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.91573 * 296.06487 * 10 9 7 31 31 H 1.08993 * 109.91979 * 57.35522 * 10 9 7 32 32 H 1.09003 * 110.95340 * 95.42473 * 11 10 9 33 33 H 1.08991 * 110.95628 * 219.14804 * 11 10 9 34 34 H 1.09005 * 108.13393 * 142.18842 * 14 12 11 35 35 H 1.08993 * 107.97967 * 25.55430 * 14 12 11 36 36 H 1.08993 * 109.47228 * 300.00523 * 18 16 15 37 37 H 1.09004 * 109.46767 * 60.00336 * 18 16 15 38 38 H 1.09005 * 109.46680 * 55.00635 * 19 18 16 39 39 H 1.09005 * 109.47229 * 299.99789 * 20 19 18 40 40 H 1.09003 * 109.47219 * 59.99838 * 20 19 18 41 41 H 1.08996 * 109.47191 * 300.00530 * 21 20 19 42 42 H 1.08998 * 109.47519 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.47319 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47300 * 59.99937 * 22 21 20 45 45 H 1.09005 * 109.47242 * 299.99818 * 23 22 21 46 46 H 1.09003 * 109.47307 * 179.97438 * 23 22 21 47 47 H 1.08996 * 109.47619 * 300.00084 * 24 19 18 48 48 H 1.08996 * 109.46652 * 60.00763 * 24 19 18 49 49 H 1.09000 * 108.76202 * 246.68954 * 25 15 14 50 50 H 1.08996 * 108.67715 * 128.47288 * 25 15 14 51 51 H 1.08993 * 109.05676 * 199.90400 * 26 25 15 52 52 H 1.09002 * 109.05224 * 80.99250 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0836 -1.2059 0.1203 9 7 1.3341 -2.3833 -0.1508 10 6 -0.1294 -2.5389 -0.2331 11 6 -0.4135 -4.0396 -0.4848 12 6 0.9209 -4.5161 -1.1003 13 1 0.9672 -4.1819 -2.1368 14 6 1.0914 -6.0043 -1.0456 15 7 1.8530 -6.5164 0.0639 16 6 2.0588 -7.8481 0.0859 17 8 1.6103 -8.5456 -0.7992 18 6 2.8462 -8.4705 1.2100 19 6 2.9324 -9.9830 0.9959 20 6 1.5328 -10.5929 1.0959 21 6 1.6190 -12.1053 0.8812 22 6 2.5215 -12.7218 1.9518 23 6 3.9212 -12.1119 1.8519 24 6 3.8349 -10.5990 2.0670 25 6 2.4207 -5.7611 1.1552 26 6 1.9930 -4.3068 1.1563 27 6 1.9473 -3.7327 -0.2609 28 1 2.9338 -3.7024 -0.7233 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5894 -2.2261 0.7043 31 1 -0.5203 -1.9437 -1.0583 32 1 -0.6188 -4.5597 0.4509 33 1 -1.2355 -4.1681 -1.1888 34 1 1.5777 -6.3242 -1.9672 35 1 0.0998 -6.4557 -1.0136 36 1 3.8509 -8.0485 1.2270 37 1 2.3497 -8.2651 2.1584 38 1 3.3481 -10.1871 0.0092 39 1 1.1171 -10.3887 2.0826 40 1 0.8899 -10.1540 0.3328 41 1 2.0345 -12.3091 -0.1056 42 1 0.6219 -12.5398 0.9528 43 1 2.5833 -13.7992 1.7986 44 1 2.1061 -12.5180 2.9387 45 1 4.3367 -12.3157 0.8650 46 1 4.5641 -12.5507 2.6149 47 1 4.8320 -10.1646 1.9957 48 1 3.4191 -10.3948 3.0536 49 1 3.5075 -5.8069 1.0852 50 1 2.1109 -6.2186 2.0947 51 1 2.6992 -3.7286 1.7520 52 1 1.0026 -4.2276 1.6046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036637611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:01 Heat of formation + Delta-G solvation = -33.780744 kcal Electronic energy + Delta-G solvation = -28295.315179 eV Core-core repulsion = 24680.026321 eV Total energy + Delta-G solvation = -3615.288858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66150 -39.00210 -37.88957 -35.39557 -33.16038 -32.52652 -31.57624 -30.84360 -29.70163 -28.59393 -27.09243 -24.97856 -23.47707 -22.77091 -22.72088 -21.72589 -20.15473 -19.91302 -19.50824 -17.71251 -17.07544 -16.84091 -16.00641 -15.73422 -15.45781 -14.81766 -14.71207 -14.42717 -14.25735 -14.20009 -13.76899 -13.59720 -13.44702 -13.05390 -12.67547 -12.49058 -12.30757 -12.11421 -11.89139 -11.73905 -11.63610 -11.49706 -11.44239 -11.26232 -11.09437 -10.96080 -10.81527 -10.76813 -10.57709 -10.37717 -10.18422 -10.11153 -10.01063 -9.87015 -9.68624 -9.62161 -9.43338 -8.62015 -8.34273 -6.89401 -5.75579 -3.07796 2.73143 3.20285 3.37598 3.42981 3.44974 4.42485 4.47936 4.49228 4.56528 4.75023 4.93738 5.03988 5.07276 5.13523 5.17435 5.20807 5.29499 5.33045 5.34743 5.37754 5.39695 5.48440 5.52516 5.58732 5.59147 5.63848 5.75172 5.81510 5.86901 5.92116 5.97016 6.01689 6.03450 6.05330 6.06354 6.14031 6.23017 6.26497 6.36258 6.38380 6.39560 6.51522 6.58775 6.82644 6.89643 7.04469 7.50006 7.51291 7.59874 7.79077 8.19821 8.32616 9.16892 9.77116 10.45272 11.36520 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.002541 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.860510 B =11016.298666 C =11502.245174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.140 4.140 12 C -0.109 4.109 13 H 0.082 0.918 14 C 0.140 3.860 15 N -0.591 5.591 16 C 0.501 3.499 17 O -0.543 6.543 18 C -0.137 4.137 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.116 3.884 26 C -0.141 4.141 27 C 0.168 3.832 28 H 0.064 0.936 29 H 0.252 0.748 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.074 0.926 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -21.333 4.430 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.053 3.947 11 C -0.178 4.178 12 C -0.129 4.129 13 H 0.100 0.900 14 C 0.017 3.983 15 N -0.323 5.323 16 C 0.289 3.711 17 O -0.421 6.421 18 C -0.177 4.177 19 C -0.089 4.089 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.008 4.008 26 C -0.181 4.181 27 C 0.060 3.940 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.924 -21.329 3.973 22.248 hybrid contribution 0.409 1.128 0.169 1.211 sum 5.333 -20.202 4.141 21.300 Atomic orbital electron populations 1.69972 1.04913 1.25060 1.56691 1.24809 0.95670 0.97616 1.02247 0.86144 0.78667 0.83724 0.77502 1.21656 1.21825 1.20665 1.19041 0.91116 0.82514 1.42958 0.90449 1.44980 1.01565 1.00298 1.85707 1.21272 0.84356 0.88608 1.00511 1.22972 0.95576 0.99875 0.99366 1.21634 0.98052 0.91962 1.01247 0.89958 1.19988 0.95514 0.94678 0.88125 1.46765 1.53643 1.07153 1.24749 1.20771 0.80833 0.82027 0.87491 1.90635 1.51205 1.61214 1.39055 1.21814 1.01124 0.96724 0.98016 1.20910 0.96430 0.91948 0.99609 1.21703 0.96914 0.95027 1.02077 1.21499 0.99210 0.95880 0.98874 1.21557 0.95604 0.99253 0.99354 1.21519 0.96919 0.95488 1.01642 1.21615 0.99407 0.95383 0.98883 1.20906 0.97319 0.94230 0.88334 1.22130 1.02685 0.91843 1.01454 1.21032 0.95032 0.86049 0.91849 0.91842 0.93755 0.94466 0.93131 0.92525 0.92122 0.92301 0.92321 0.88986 0.89010 0.90506 0.92822 0.89884 0.92067 0.92375 0.92451 0.92199 0.92043 0.92256 0.92024 0.91958 0.92498 0.92095 0.90717 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.42 55.49 0.58 -25.97 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.72 29.56 -169.99 -5.02 16.69 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.11 10.30 -15.06 -0.16 -6.27 16 8 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 9 N -0.60 -14.53 2.91 -161.64 -0.47 -15.00 16 10 C 0.18 4.16 5.12 -2.60 -0.01 4.15 16 11 C -0.14 -2.55 5.69 -25.00 -0.14 -2.69 16 12 C -0.11 -1.88 2.89 -90.86 -0.26 -2.15 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 14 C 0.14 2.16 5.11 -6.92 -0.04 2.12 16 15 N -0.59 -8.32 3.20 -180.08 -0.58 -8.90 16 16 C 0.50 6.83 7.25 -10.99 -0.08 6.75 16 17 O -0.54 -8.92 13.61 5.55 0.08 -8.85 16 18 C -0.14 -1.37 3.80 -27.89 -0.11 -1.47 16 19 C -0.07 -0.69 1.84 -90.62 -0.17 -0.85 16 20 C -0.12 -1.25 4.94 -26.74 -0.13 -1.38 16 21 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.89 5.92 -26.70 -0.16 -1.04 16 24 C -0.12 -0.91 5.21 -26.70 -0.14 -1.05 16 25 C 0.12 1.48 5.24 -5.90 -0.03 1.45 16 26 C -0.14 -2.31 5.23 -27.46 -0.14 -2.46 16 27 C 0.17 3.22 3.67 -66.24 -0.24 2.98 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.04 0.97 7.71 -51.93 -0.40 0.57 16 31 H 0.05 1.33 7.24 -51.93 -0.38 0.96 16 32 H 0.06 0.99 7.16 -51.93 -0.37 0.62 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 35 H 0.06 0.92 7.78 -51.93 -0.40 0.52 16 36 H 0.09 0.79 7.77 -51.93 -0.40 0.39 16 37 H 0.09 0.81 7.34 -51.93 -0.38 0.43 16 38 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 50 H 0.06 0.67 7.01 -51.93 -0.36 0.30 16 51 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 52 H 0.07 1.22 6.44 -51.93 -0.33 0.88 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -29.86 380.68 -11.52 -41.38 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -9.62 Total: -0.58 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.22 Total: -4.51 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.47 Total: -49.87 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.86 -11.52 -41.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036637611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.598 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds