Wall clock time and date at job start Tue Mar 31 2020 13:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00491 * 2 1 4 4 H 1.48497 * 109.47393 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47357 * 300.00248 * 3 2 1 6 6 H 1.48506 * 109.46983 * 60.00355 * 3 2 1 7 7 C 1.38816 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.40245 * 0.02670 * 9 7 2 11 11 C 1.55291 * 107.04035 * 184.90393 * 10 9 7 12 12 C 1.53738 * 101.84447 * 22.47586 * 11 10 9 13 13 H 1.09003 * 111.30769 * 78.95924 * 12 11 10 14 14 C 1.52237 * 114.74427 * 207.24261 * 12 11 10 15 15 N 1.47720 * 106.36522 * 169.57507 * 14 12 11 16 16 C 1.34784 * 119.68494 * 127.96521 * 15 14 12 17 17 O 1.21277 * 119.99580 * 359.97232 * 16 15 14 18 18 C 1.50700 * 120.00113 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47095 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47233 * 295.00519 * 19 18 16 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47025 * 59.99639 * 21 20 19 23 23 C 1.53002 * 109.46920 * 300.00049 * 22 21 20 24 24 C 1.52993 * 109.47284 * 175.00238 * 19 18 16 25 25 C 1.46598 * 120.63507 * 307.94124 * 15 14 12 26 26 C 1.53957 * 110.57328 * 47.82505 * 25 15 14 27 27 C 1.45468 * 126.40523 * 179.97438 * 9 7 2 28 28 H 1.08996 * 109.26372 * 265.56688 * 27 9 7 29 29 H 0.97006 * 119.99331 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.91906 * 304.24554 * 10 9 7 31 31 H 1.08996 * 109.92269 * 65.34979 * 10 9 7 32 32 H 1.09002 * 110.95460 * 140.61367 * 11 10 9 33 33 H 1.09001 * 110.95292 * 264.29957 * 11 10 9 34 34 H 1.08997 * 110.07112 * 288.78604 * 14 12 11 35 35 H 1.08997 * 110.06793 * 50.25803 * 14 12 11 36 36 H 1.08996 * 109.46964 * 299.99784 * 18 16 15 37 37 H 1.09002 * 109.46796 * 59.99953 * 18 16 15 38 38 H 1.08998 * 109.46912 * 55.00105 * 19 18 16 39 39 H 1.08998 * 109.46833 * 299.99633 * 20 19 18 40 40 H 1.08999 * 109.47619 * 59.99385 * 20 19 18 41 41 H 1.08998 * 109.46912 * 299.99585 * 21 20 19 42 42 H 1.08992 * 109.47193 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.47180 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47319 * 60.00196 * 22 21 20 45 45 H 1.09005 * 109.47339 * 299.99811 * 23 22 21 46 46 H 1.09005 * 109.46705 * 180.02562 * 23 22 21 47 47 H 1.09005 * 109.46892 * 300.00426 * 24 19 18 48 48 H 1.08998 * 109.47255 * 60.00077 * 24 19 18 49 49 H 1.09006 * 109.25382 * 287.54285 * 25 15 14 50 50 H 1.08995 * 109.25727 * 168.11053 * 25 15 14 51 51 H 1.08997 * 109.87984 * 68.40847 * 26 25 15 52 52 H 1.09003 * 109.87984 * 189.41439 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1469 -2.5533 -0.0006 11 6 -0.4343 -4.0741 0.1264 12 6 0.8681 -4.5895 0.7601 13 1 0.8918 -4.3931 1.8321 14 6 1.2005 -6.0408 0.4426 15 7 2.5821 -6.2644 0.9151 16 6 2.8487 -7.3040 1.7305 17 8 1.9562 -8.0502 2.0731 18 6 4.2557 -7.5391 2.2163 19 6 4.2836 -8.7731 3.1203 20 6 3.4603 -8.5007 4.3808 21 6 3.4887 -9.7345 5.2851 22 6 4.9343 -10.0459 5.6776 23 6 5.7576 -10.3184 4.4171 24 6 5.7290 -9.0852 3.5129 25 6 3.6662 -5.3666 0.5053 26 6 3.2475 -3.8959 0.6842 27 6 1.9076 -3.7212 -0.0016 28 1 1.9779 -4.0821 -1.0277 29 1 -0.4849 0.8401 0.0004 30 1 -0.5803 -2.0216 0.8466 31 1 -0.5636 -2.1700 -0.9319 32 1 -1.2857 -4.2565 0.7821 33 1 -0.5961 -4.5233 -0.8535 34 1 0.5138 -6.7052 0.9670 35 1 1.1387 -6.2121 -0.6321 36 1 4.9131 -7.6993 1.3618 37 1 4.5960 -6.6694 2.7786 38 1 3.8602 -9.6240 2.5867 39 1 3.8837 -7.6498 4.9145 40 1 2.4305 -8.2783 4.1012 41 1 3.0655 -10.5857 4.7518 42 1 2.9025 -9.5402 6.1833 43 1 4.9546 -10.9252 6.3215 44 1 5.3574 -9.1947 6.2110 45 1 5.3345 -11.1697 3.8837 46 1 6.7874 -10.5407 4.6968 47 1 6.3156 -9.2792 2.6148 48 1 6.1524 -8.2343 4.0465 49 1 3.9059 -5.5474 -0.5426 50 1 4.5478 -5.5661 1.1146 51 1 3.1545 -3.6634 1.7450 52 1 3.9882 -3.2412 0.2249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036637612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:05 Heat of formation + Delta-G solvation = -36.357277 kcal Electronic energy + Delta-G solvation = -28342.582974 eV Core-core repulsion = 24727.182389 eV Total energy + Delta-G solvation = -3615.400585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.42786 -38.93585 -37.80044 -35.34860 -33.08105 -32.48178 -31.54787 -30.83499 -29.76931 -28.37258 -26.95177 -24.85926 -23.43850 -22.73063 -22.39109 -21.63382 -20.10222 -19.91128 -19.63018 -18.69232 -17.09495 -16.27723 -15.76200 -15.62442 -15.35739 -15.00296 -14.42105 -14.33654 -14.29775 -14.05150 -13.88690 -13.69132 -13.17584 -12.88919 -12.70889 -12.45066 -12.41132 -12.21293 -12.10207 -11.78108 -11.60394 -11.46988 -11.40176 -11.24084 -11.07925 -10.85741 -10.81666 -10.73077 -10.55904 -10.34563 -10.18592 -10.11617 -10.05494 -9.88785 -9.64527 -9.49765 -9.39141 -8.64304 -8.45389 -6.85143 -5.73371 -3.06510 2.74858 3.11708 3.37736 3.42793 3.45613 4.44248 4.47533 4.49750 4.57201 4.74964 4.95783 4.99715 5.06446 5.09421 5.18923 5.26255 5.32555 5.35283 5.36783 5.41313 5.48057 5.52492 5.55722 5.58309 5.60017 5.62222 5.75957 5.80774 5.88106 5.89796 5.98480 6.03126 6.04277 6.06133 6.15305 6.15764 6.18641 6.23336 6.35938 6.39321 6.41810 6.51327 6.61755 6.63960 6.85075 7.06171 7.53701 7.55426 7.60741 7.79940 8.22836 8.31180 9.17646 9.81356 10.49604 11.39253 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.002781 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.613028 B =10066.460186 C =10627.049611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.079 0.921 14 C 0.127 3.873 15 N -0.609 5.609 16 C 0.512 3.488 17 O -0.546 6.546 18 C -0.138 4.138 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.111 3.889 26 C -0.129 4.129 27 C 0.168 3.832 28 H 0.019 0.981 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.080 0.920 51 H 0.067 0.933 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.041 -18.501 5.892 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.097 0.903 14 C 0.005 3.995 15 N -0.342 5.342 16 C 0.300 3.700 17 O -0.424 6.424 18 C -0.178 4.178 19 C -0.088 4.088 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.013 4.013 26 C -0.169 4.169 27 C 0.059 3.941 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.086 0.914 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.529 -18.623 6.044 21.775 hybrid contribution 0.500 1.162 -0.097 1.268 sum 10.029 -17.462 5.947 20.997 Atomic orbital electron populations 1.69955 1.04902 1.24916 1.57087 1.24801 0.95684 0.97654 1.02376 0.86080 0.78694 0.83957 0.77238 1.20528 1.21791 1.21818 1.19036 0.90359 0.82307 1.43602 0.90341 1.44218 1.01673 0.99480 1.86574 1.21531 0.83923 0.88330 1.00981 1.22708 0.95847 0.99632 0.99302 1.22642 0.97799 0.93431 1.00603 0.90308 1.21572 0.81926 0.96984 0.99054 1.48363 1.09722 1.27743 1.48326 1.20692 0.91104 0.80259 0.77936 1.90628 1.48021 1.46449 1.57293 1.21806 0.94603 1.00499 1.00889 1.20903 0.95305 0.96816 0.95786 1.21711 1.01945 0.97240 0.94897 1.21496 0.96086 0.98569 0.99296 1.21559 0.95923 1.01067 0.97238 1.21497 0.99640 0.98018 0.96383 1.21596 0.96188 0.98186 0.99323 1.21798 0.88909 0.90425 1.00140 1.21884 0.99420 0.93567 1.01987 1.20633 0.91144 0.87193 0.95113 0.96380 0.93805 0.92771 0.94344 0.92096 0.92373 0.89330 0.91535 0.89121 0.88935 0.90536 0.92753 0.89840 0.92096 0.92332 0.92444 0.92164 0.92079 0.92256 0.92077 0.91931 0.91745 0.90217 0.91421 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.43 55.49 0.58 -26.26 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -6.04 9.88 -15.06 -0.15 -6.19 16 8 H 0.08 2.02 7.21 -52.48 -0.38 1.64 16 9 N -0.60 -14.68 3.35 -163.07 -0.55 -15.23 16 10 C 0.18 4.24 5.45 -1.92 -0.01 4.23 16 11 C -0.14 -2.53 6.53 -25.13 -0.16 -2.69 16 12 C -0.12 -2.21 2.86 -89.36 -0.26 -2.46 16 13 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 14 C 0.13 1.94 5.95 -3.76 -0.02 1.91 16 15 N -0.61 -8.53 3.00 -172.49 -0.52 -9.05 16 16 C 0.51 7.05 7.39 -10.98 -0.08 6.97 16 17 O -0.55 -9.08 13.32 5.56 0.07 -9.01 16 18 C -0.14 -1.39 3.50 -27.88 -0.10 -1.49 16 19 C -0.07 -0.69 1.84 -90.62 -0.17 -0.86 16 20 C -0.12 -1.32 4.94 -26.73 -0.13 -1.45 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 22 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 23 C -0.12 -0.90 5.92 -26.76 -0.16 -1.06 16 24 C -0.12 -0.92 5.20 -26.76 -0.14 -1.06 16 25 C 0.11 1.39 6.21 -3.49 -0.02 1.37 16 26 C -0.13 -2.11 5.48 -26.98 -0.15 -2.26 16 27 C 0.17 3.28 2.58 -67.96 -0.18 3.11 16 28 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 31 H 0.04 1.01 7.76 -51.93 -0.40 0.61 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 34 H 0.09 1.40 6.99 -51.93 -0.36 1.04 16 35 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 36 H 0.09 0.75 7.99 -51.93 -0.41 0.34 16 37 H 0.09 0.86 7.55 -51.93 -0.39 0.47 16 38 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.79 5.84 -51.93 -0.30 0.48 16 51 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 52 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -30.53 382.35 -11.43 -41.96 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -9.63 Total: -0.24 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.13 Total: -4.69 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.48 Total: -50.54 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.53 -11.43 -41.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036637612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.602 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds