Wall clock time and date at job start Tue Mar 31 2020 13:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47269 * 274.80897 * 3 2 1 5 5 H 1.48503 * 109.47102 * 34.80790 * 3 2 1 6 6 H 1.48498 * 109.47237 * 154.80808 * 3 2 1 7 7 C 1.38812 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99969 * 188.09307 * 7 2 1 9 9 N 1.36938 * 120.00110 * 8.08686 * 7 2 1 10 10 C 1.48160 * 126.40207 * 7.59615 * 9 7 2 11 11 C 1.55291 * 107.21091 * 174.97294 * 10 9 7 12 12 C 1.54062 * 101.69742 * 337.73755 * 11 10 9 13 13 H 1.08998 * 111.83606 * 280.54891 * 12 11 10 14 14 C 1.52677 * 114.28824 * 152.16975 * 12 11 10 15 15 N 1.47715 * 105.88005 * 189.74147 * 14 12 11 16 16 C 1.34777 * 119.68265 * 232.42243 * 15 14 12 17 17 O 1.21286 * 120.00182 * 359.96834 * 16 15 14 18 18 C 1.50696 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.47196 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47184 * 294.99384 * 19 18 16 21 21 C 1.52999 * 109.47356 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47365 * 59.99913 * 21 20 19 23 23 C 1.52999 * 109.46954 * 300.00333 * 22 21 20 24 24 C 1.52999 * 109.47191 * 174.99510 * 19 18 16 25 25 C 1.46596 * 120.63389 * 52.39338 * 15 14 12 26 26 C 1.53954 * 110.57900 * 312.20392 * 25 15 14 27 27 C 1.45469 * 126.40739 * 187.58920 * 9 7 2 28 28 H 1.08994 * 109.26488 * 93.79784 * 27 9 7 29 29 H 0.97009 * 119.99780 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.92019 * 294.41788 * 10 9 7 31 31 H 1.08999 * 109.92134 * 55.52668 * 10 9 7 32 32 H 1.09004 * 110.95587 * 95.75607 * 11 10 9 33 33 H 1.09002 * 110.95855 * 219.47802 * 11 10 9 34 34 H 1.09003 * 110.00199 * 70.84019 * 14 12 11 35 35 H 1.09006 * 110.70088 * 309.00828 * 14 12 11 36 36 H 1.09007 * 109.46785 * 299.99293 * 18 16 15 37 37 H 1.08997 * 109.47809 * 59.99401 * 18 16 15 38 38 H 1.09003 * 109.47461 * 54.99590 * 19 18 16 39 39 H 1.09003 * 109.47090 * 300.00433 * 20 19 18 40 40 H 1.08999 * 109.46917 * 59.99902 * 20 19 18 41 41 H 1.09001 * 109.47003 * 299.99327 * 21 20 19 42 42 H 1.09003 * 109.46765 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.46605 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46852 * 60.00026 * 22 21 20 45 45 H 1.09003 * 109.47090 * 299.99547 * 23 22 21 46 46 H 1.08999 * 109.46917 * 180.02562 * 23 22 21 47 47 H 1.08996 * 109.47507 * 299.99453 * 24 19 18 48 48 H 1.08997 * 109.47266 * 59.99855 * 24 19 18 49 49 H 1.08994 * 109.25528 * 191.92018 * 25 15 14 50 50 H 1.09000 * 109.22274 * 72.46980 * 25 15 14 51 51 H 1.09001 * 109.88363 * 291.59445 * 26 25 15 52 52 H 1.09001 * 109.94450 * 170.54548 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3961 2.1051 -1.3951 5 1 1.5022 2.6212 0.7992 6 1 3.5949 1.4129 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0821 -1.2069 0.1311 9 7 1.3357 -2.3821 -0.1679 10 6 -0.0967 -2.5345 -0.5143 11 6 -0.3614 -4.0512 -0.7177 12 6 1.0534 -4.5762 -1.0280 13 1 1.3387 -4.3857 -2.0626 14 6 1.2828 -6.0334 -0.6343 15 7 2.7332 -6.2692 -0.7848 16 6 3.1671 -7.3110 -1.5216 17 8 2.3679 -8.0499 -2.0569 18 6 4.6452 -7.5579 -1.6804 19 6 4.8647 -8.7928 -2.5565 20 6 4.3226 -10.0304 -1.8386 21 6 4.5427 -11.2655 -2.7144 22 6 6.0392 -11.4436 -2.9782 23 6 6.5813 -10.2060 -3.6961 24 6 6.3611 -8.9712 -2.8208 25 6 3.7052 -5.3806 -0.1409 26 6 3.3497 -3.9065 -0.4066 27 6 1.8917 -3.7202 -0.0390 28 1 1.7274 -4.0816 0.9761 29 1 -0.4850 0.8401 0.0004 30 1 -0.7175 -2.1549 0.2972 31 1 -0.3160 -1.9927 -1.4342 32 1 -0.7536 -4.5040 0.1929 33 1 -1.0360 -4.2201 -1.5570 34 1 0.7256 -6.6919 -1.3007 35 1 0.9811 -6.2054 0.3990 36 1 5.1098 -6.6912 -2.1507 37 1 5.0933 -7.7236 -0.7008 38 1 4.3413 -8.6640 -3.5040 39 1 4.8460 -10.1592 -0.8912 40 1 3.2565 -9.9033 -1.6503 41 1 4.0195 -11.1369 -3.6619 42 1 4.1561 -12.1470 -2.2030 43 1 6.1959 -12.3232 -3.6025 44 1 6.5624 -11.5722 -2.0306 45 1 6.0582 -10.0774 -4.6437 46 1 7.6474 -10.3331 -3.8844 47 1 6.7474 -8.0896 -3.3323 48 1 6.8846 -9.1001 -1.8735 49 1 4.6992 -5.5877 -0.5373 50 1 3.7016 -5.5633 0.9337 51 1 3.4989 -3.6733 -1.4609 52 1 3.9729 -3.2571 0.2083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036637613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:08 Heat of formation + Delta-G solvation = -36.807826 kcal Electronic energy + Delta-G solvation = -28259.977725 eV Core-core repulsion = 24644.557602 eV Total energy + Delta-G solvation = -3615.420122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43214 -38.94121 -37.80092 -35.34541 -33.07947 -32.47749 -31.54466 -30.85401 -29.77432 -28.37283 -26.96252 -24.85737 -23.43385 -22.75176 -22.39284 -21.64101 -20.11879 -19.88425 -19.69567 -18.68470 -17.09347 -16.26818 -15.83441 -15.55379 -15.37774 -15.04863 -14.46907 -14.31357 -14.28423 -14.05294 -13.88045 -13.53435 -13.39855 -12.90751 -12.60604 -12.47213 -12.44370 -12.26447 -12.06960 -11.77162 -11.71539 -11.47987 -11.34127 -11.25108 -11.09014 -10.87786 -10.80093 -10.74612 -10.58474 -10.36005 -10.19710 -10.14714 -10.09863 -9.91253 -9.63720 -9.46669 -9.39380 -8.64507 -8.45258 -6.83429 -5.73864 -3.07721 2.74546 3.11482 3.37994 3.43015 3.45381 4.43518 4.46791 4.48888 4.56287 4.73696 4.92955 5.01932 5.05560 5.07509 5.18094 5.24493 5.32242 5.34348 5.36393 5.39692 5.45783 5.51925 5.52859 5.57137 5.59176 5.61008 5.75078 5.80006 5.86820 5.89198 5.96379 6.01237 6.03657 6.04918 6.12861 6.15117 6.17642 6.22695 6.35240 6.37316 6.38846 6.49893 6.59779 6.62677 6.84281 7.06093 7.47401 7.54694 7.64053 7.77846 8.22793 8.30751 9.16568 9.81226 10.50086 11.38591 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.002680 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.182950 B =10446.516325 C =11229.470666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.126 3.874 15 N -0.609 5.609 16 C 0.511 3.489 17 O -0.546 6.546 18 C -0.138 4.138 19 C -0.070 4.070 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.111 3.889 26 C -0.131 4.131 27 C 0.167 3.833 28 H 0.020 0.980 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.066 0.934 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.013 -19.402 -3.277 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.174 4.174 12 C -0.143 4.143 13 H 0.098 0.902 14 C 0.004 3.996 15 N -0.342 5.342 16 C 0.300 3.700 17 O -0.424 6.424 18 C -0.178 4.178 19 C -0.089 4.089 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.012 4.012 26 C -0.170 4.170 27 C 0.058 3.942 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.536 -19.523 -3.507 22.460 hybrid contribution 0.496 1.167 0.072 1.270 sum 11.032 -18.356 -3.435 21.690 Atomic orbital electron populations 1.69957 1.04948 1.25072 1.56531 1.24807 0.95618 0.97716 1.02288 0.86150 0.78672 0.83772 0.77471 1.21711 1.21792 1.20625 1.18982 0.90899 0.82633 1.43028 0.90446 1.44180 1.06413 0.99474 1.81711 1.21516 0.85276 0.88564 0.99658 1.22748 0.94970 0.99459 1.00234 1.22785 0.97793 0.93358 1.00398 0.90242 1.21708 0.79706 0.96865 1.01334 1.48381 1.07527 1.27850 1.50446 1.20693 0.91253 0.80195 0.77873 1.90630 1.57125 1.46650 1.48013 1.21803 0.93508 1.00168 1.02307 1.20909 0.95498 0.93344 0.99141 1.21702 1.02797 0.93505 0.97658 1.21501 0.95769 0.97946 1.00267 1.21554 0.96388 0.97504 1.00293 1.21501 1.00409 0.94819 0.98861 1.21596 0.95807 0.97903 0.99982 1.21794 0.91490 0.90538 0.97411 1.21899 0.99127 0.93571 1.02375 1.20627 0.91260 0.87253 0.95038 0.96250 0.93765 0.92745 0.94659 0.92182 0.92103 0.89349 0.91408 0.88924 0.89134 0.90455 0.92871 0.89887 0.92045 0.92389 0.92441 0.92222 0.92022 0.92237 0.91989 0.91997 0.90214 0.91722 0.91487 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.65 55.49 0.59 -26.18 16 2 C -0.01 -0.21 5.45 -17.43 -0.09 -0.31 16 3 Si 0.91 21.79 29.56 -169.99 -5.03 16.76 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.12 9.89 -15.06 -0.15 -6.26 16 8 H 0.08 1.99 7.19 -52.49 -0.38 1.62 16 9 N -0.59 -14.64 3.35 -163.10 -0.55 -15.19 16 10 C 0.17 4.17 5.45 -1.91 -0.01 4.16 16 11 C -0.14 -2.50 6.55 -24.96 -0.16 -2.67 16 12 C -0.12 -2.17 2.88 -88.98 -0.26 -2.42 16 13 H 0.08 1.51 8.08 -51.93 -0.42 1.09 16 14 C 0.13 1.91 5.96 -3.54 -0.02 1.89 16 15 N -0.61 -8.50 2.99 -172.23 -0.51 -9.01 16 16 C 0.51 7.02 7.39 -10.99 -0.08 6.94 16 17 O -0.55 -9.05 13.32 5.55 0.07 -8.97 16 18 C -0.14 -1.39 3.50 -27.89 -0.10 -1.48 16 19 C -0.07 -0.70 1.84 -90.62 -0.17 -0.86 16 20 C -0.12 -1.23 4.94 -26.73 -0.13 -1.36 16 21 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -0.90 5.92 -26.76 -0.16 -1.06 16 24 C -0.12 -0.92 5.20 -26.76 -0.14 -1.06 16 25 C 0.11 1.39 6.21 -3.49 -0.02 1.37 16 26 C -0.13 -2.12 5.45 -26.98 -0.15 -2.27 16 27 C 0.17 3.26 2.59 -67.98 -0.18 3.09 16 28 H 0.02 0.41 7.90 -51.93 -0.41 0.00 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.45 7.24 -51.93 -0.38 1.07 16 31 H 0.04 0.93 7.85 -51.93 -0.41 0.52 16 32 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 35 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.09 0.84 7.55 -51.92 -0.39 0.44 16 37 H 0.09 0.77 7.99 -51.93 -0.41 0.35 16 38 H 0.08 0.91 7.95 -51.93 -0.41 0.49 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.07 5.95 -51.93 -0.31 0.76 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.78 5.83 -51.93 -0.30 0.48 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 52 H 0.08 1.26 7.63 -51.93 -0.40 0.87 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -30.56 382.57 -11.41 -41.98 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -9.63 Total: -0.51 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.13 Total: -4.63 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.47 Total: -50.39 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.56 -11.41 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036637613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.168 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds