Wall clock time and date at job start Tue Mar 31 2020 13:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47269 * 274.80897 * 3 2 1 5 5 H 1.48503 * 109.47102 * 34.80790 * 3 2 1 6 6 H 1.48498 * 109.47237 * 154.80808 * 3 2 1 7 7 C 1.38812 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99969 * 188.09307 * 7 2 1 9 9 N 1.36938 * 120.00110 * 8.08686 * 7 2 1 10 10 C 1.48160 * 126.40207 * 7.59615 * 9 7 2 11 11 C 1.55291 * 107.21091 * 174.97294 * 10 9 7 12 12 C 1.54062 * 101.69742 * 337.73755 * 11 10 9 13 13 H 1.08998 * 111.83606 * 280.54891 * 12 11 10 14 14 C 1.52677 * 114.28824 * 152.16975 * 12 11 10 15 15 N 1.47715 * 105.88005 * 189.74147 * 14 12 11 16 16 C 1.34777 * 119.68265 * 232.42243 * 15 14 12 17 17 O 1.21286 * 120.00182 * 359.96834 * 16 15 14 18 18 C 1.50696 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.47196 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47184 * 294.99384 * 19 18 16 21 21 C 1.52999 * 109.47356 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47365 * 59.99913 * 21 20 19 23 23 C 1.52999 * 109.46954 * 300.00333 * 22 21 20 24 24 C 1.52999 * 109.47191 * 174.99510 * 19 18 16 25 25 C 1.46596 * 120.63389 * 52.39338 * 15 14 12 26 26 C 1.53954 * 110.57900 * 312.20392 * 25 15 14 27 27 C 1.45469 * 126.40739 * 187.58920 * 9 7 2 28 28 H 1.08994 * 109.26488 * 93.79784 * 27 9 7 29 29 H 0.97009 * 119.99780 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.92019 * 294.41788 * 10 9 7 31 31 H 1.08999 * 109.92134 * 55.52668 * 10 9 7 32 32 H 1.09004 * 110.95587 * 95.75607 * 11 10 9 33 33 H 1.09002 * 110.95855 * 219.47802 * 11 10 9 34 34 H 1.09003 * 110.00199 * 70.84019 * 14 12 11 35 35 H 1.09006 * 110.70088 * 309.00828 * 14 12 11 36 36 H 1.09007 * 109.46785 * 299.99293 * 18 16 15 37 37 H 1.08997 * 109.47809 * 59.99401 * 18 16 15 38 38 H 1.09003 * 109.47461 * 54.99590 * 19 18 16 39 39 H 1.09003 * 109.47090 * 300.00433 * 20 19 18 40 40 H 1.08999 * 109.46917 * 59.99902 * 20 19 18 41 41 H 1.09001 * 109.47003 * 299.99327 * 21 20 19 42 42 H 1.09003 * 109.46765 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.46605 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46852 * 60.00026 * 22 21 20 45 45 H 1.09003 * 109.47090 * 299.99547 * 23 22 21 46 46 H 1.08999 * 109.46917 * 180.02562 * 23 22 21 47 47 H 1.08996 * 109.47507 * 299.99453 * 24 19 18 48 48 H 1.08997 * 109.47266 * 59.99855 * 24 19 18 49 49 H 1.08994 * 109.25528 * 191.92018 * 25 15 14 50 50 H 1.09000 * 109.22274 * 72.46980 * 25 15 14 51 51 H 1.09001 * 109.88363 * 291.59445 * 26 25 15 52 52 H 1.09001 * 109.94450 * 170.54548 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3961 2.1051 -1.3951 5 1 1.5022 2.6212 0.7992 6 1 3.5949 1.4129 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0821 -1.2069 0.1311 9 7 1.3357 -2.3821 -0.1679 10 6 -0.0967 -2.5345 -0.5143 11 6 -0.3614 -4.0512 -0.7177 12 6 1.0534 -4.5762 -1.0280 13 1 1.3387 -4.3857 -2.0626 14 6 1.2828 -6.0334 -0.6343 15 7 2.7332 -6.2692 -0.7848 16 6 3.1671 -7.3110 -1.5216 17 8 2.3679 -8.0499 -2.0569 18 6 4.6452 -7.5579 -1.6804 19 6 4.8647 -8.7928 -2.5565 20 6 4.3226 -10.0304 -1.8386 21 6 4.5427 -11.2655 -2.7144 22 6 6.0392 -11.4436 -2.9782 23 6 6.5813 -10.2060 -3.6961 24 6 6.3611 -8.9712 -2.8208 25 6 3.7052 -5.3806 -0.1409 26 6 3.3497 -3.9065 -0.4066 27 6 1.8917 -3.7202 -0.0390 28 1 1.7274 -4.0816 0.9761 29 1 -0.4850 0.8401 0.0004 30 1 -0.7175 -2.1549 0.2972 31 1 -0.3160 -1.9927 -1.4342 32 1 -0.7536 -4.5040 0.1929 33 1 -1.0360 -4.2201 -1.5570 34 1 0.7256 -6.6919 -1.3007 35 1 0.9811 -6.2054 0.3990 36 1 5.1098 -6.6912 -2.1507 37 1 5.0933 -7.7236 -0.7008 38 1 4.3413 -8.6640 -3.5040 39 1 4.8460 -10.1592 -0.8912 40 1 3.2565 -9.9033 -1.6503 41 1 4.0195 -11.1369 -3.6619 42 1 4.1561 -12.1470 -2.2030 43 1 6.1959 -12.3232 -3.6025 44 1 6.5624 -11.5722 -2.0306 45 1 6.0582 -10.0774 -4.6437 46 1 7.6474 -10.3331 -3.8844 47 1 6.7474 -8.0896 -3.3323 48 1 6.8846 -9.1001 -1.8735 49 1 4.6992 -5.5877 -0.5373 50 1 3.7016 -5.5633 0.9337 51 1 3.4989 -3.6733 -1.4609 52 1 3.9729 -3.2571 0.2083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036637613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:07 Heat of formation + Delta-G solvation = -52.526847 kcal Electronic energy + Delta-G solvation = -28260.659352 eV Core-core repulsion = 24644.557602 eV Total energy + Delta-G solvation = -3616.101750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56941 -40.10336 -38.83659 -36.74361 -34.58977 -33.60340 -32.96057 -31.52333 -31.38312 -29.85917 -27.94541 -26.63791 -24.81115 -23.73497 -23.43320 -22.48171 -21.86933 -21.14635 -20.57445 -19.82723 -18.60285 -17.73491 -17.01911 -16.79156 -16.53436 -16.15551 -15.99406 -15.66186 -15.18103 -15.12677 -14.89466 -14.74888 -14.64109 -14.22089 -13.95346 -13.84586 -13.45909 -13.20675 -13.16333 -13.03642 -12.94018 -12.79527 -12.71144 -12.46063 -12.42536 -12.07601 -11.98935 -11.92290 -11.80260 -11.77782 -11.63965 -11.49635 -11.27702 -11.14902 -10.94136 -10.85476 -10.70242 -10.44043 -9.61587 -8.85927 -7.83787 -5.19027 1.46060 1.47840 1.56387 1.70398 2.04497 2.50877 3.34503 3.43174 3.62089 3.76050 3.86016 3.88700 3.90923 4.00265 4.06210 4.21914 4.24254 4.29379 4.37653 4.39592 4.50678 4.52353 4.60404 4.64158 4.66088 4.72426 4.74160 4.78466 4.82625 4.85368 4.90232 4.92022 4.93956 5.04252 5.06535 5.11606 5.23297 5.24922 5.31186 5.35362 5.38508 5.45617 5.47726 5.55134 5.57767 5.63062 5.64590 5.67419 5.75416 6.20922 6.48532 7.08431 7.25174 7.79637 8.49411 9.28268 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.002680 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.182950 B =10446.516325 C =11229.470666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.072 4.072 3 Si 0.974 3.026 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.614 5.614 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.108 4.108 13 H 0.063 0.937 14 C 0.134 3.866 15 N -0.613 5.613 16 C 0.507 3.493 17 O -0.579 6.579 18 C -0.133 4.133 19 C -0.068 4.068 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.110 4.110 25 C 0.118 3.882 26 C -0.125 4.125 27 C 0.156 3.844 28 H 0.019 0.981 29 H 0.245 0.755 30 H 0.019 0.981 31 H -0.002 1.002 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.117 0.883 50 H 0.081 0.919 51 H 0.055 0.945 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.238 -21.040 -2.774 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.226 1.226 6 H -0.186 1.186 7 C -0.358 4.358 8 H 0.107 0.893 9 N -0.339 5.339 10 C 0.054 3.946 11 C -0.161 4.161 12 C -0.128 4.128 13 H 0.082 0.918 14 C 0.012 3.988 15 N -0.345 5.345 16 C 0.298 3.702 17 O -0.459 6.459 18 C -0.172 4.172 19 C -0.087 4.087 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.148 4.148 25 C -0.004 4.004 26 C -0.164 4.164 27 C 0.049 3.951 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.016 0.984 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.135 0.865 50 H 0.099 0.901 51 H 0.074 0.926 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.808 -21.197 -2.999 25.475 hybrid contribution -0.552 1.627 -0.095 1.720 sum 13.256 -19.570 -3.094 23.839 Atomic orbital electron populations 1.70177 1.06487 1.25126 1.58482 1.25661 0.96460 1.01137 1.03190 0.85114 0.78113 0.79480 0.77020 1.21941 1.22567 1.18615 1.19420 0.91607 0.83633 1.41145 0.89349 1.44483 1.06883 1.00995 1.81499 1.21292 0.85059 0.91775 0.96455 1.22628 0.96256 0.95418 1.01766 1.22610 0.96366 0.94852 0.98960 0.91820 1.21513 0.81127 0.94440 1.01757 1.48458 1.07020 1.28315 1.50728 1.21385 0.92717 0.79388 0.76755 1.90630 1.58415 1.47765 1.49133 1.21876 0.90644 1.00795 1.03901 1.20870 0.96768 0.93180 0.97877 1.21641 1.01022 0.94293 0.98481 1.21498 0.97012 0.97637 0.99423 1.21535 0.95036 0.97940 1.00887 1.21526 1.01156 0.94667 0.98410 1.21568 0.94056 0.98357 1.00795 1.21868 0.92588 0.87364 0.98589 1.21833 0.96441 0.96564 1.01529 1.20876 0.93917 0.84907 0.95369 0.96314 0.94630 0.96310 0.98372 0.90441 0.90536 0.89869 0.90248 0.87150 0.86485 0.92968 0.91704 0.92873 0.93417 0.92147 0.91753 0.91383 0.92926 0.90808 0.91187 0.90626 0.86522 0.90062 0.92608 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.97 10.65 21.65 0.23 -57.74 16 2 C -0.07 -4.07 5.45 84.86 0.46 -3.60 16 3 Si 0.97 45.44 29.56 68.60 2.03 47.46 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.23 -12.44 9.89 84.03 0.83 -11.61 16 8 H 0.09 4.49 7.19 -2.91 -0.02 4.47 16 9 N -0.61 -30.83 3.35 -669.91 -2.24 -33.07 16 10 C 0.18 8.94 5.45 86.85 0.47 9.42 16 11 C -0.12 -4.52 6.55 31.74 0.21 -4.32 16 12 C -0.11 -3.72 2.88 -9.73 -0.03 -3.75 16 13 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 14 C 0.13 3.86 5.96 86.04 0.51 4.37 16 15 N -0.61 -15.51 2.99 -817.20 -2.44 -17.95 16 16 C 0.51 12.80 7.39 87.66 0.65 13.45 16 17 O -0.58 -18.80 13.32 -3.05 -0.04 -18.84 16 18 C -0.13 -2.20 3.50 29.85 0.10 -2.10 16 19 C -0.07 -1.20 1.84 -10.80 -0.02 -1.22 16 20 C -0.12 -2.23 4.94 30.59 0.15 -2.08 16 21 C -0.12 -2.02 5.92 30.59 0.18 -1.84 16 22 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 23 C -0.12 -1.53 5.92 30.58 0.18 -1.35 16 24 C -0.11 -1.40 5.20 30.58 0.16 -1.24 16 25 C 0.12 2.52 6.21 86.68 0.54 3.06 16 26 C -0.12 -3.79 5.45 30.43 0.17 -3.62 16 27 C 0.16 5.99 2.59 45.51 0.12 6.11 16 28 H 0.02 0.76 7.90 -2.39 -0.02 0.74 16 29 H 0.24 14.53 8.31 -92.70 -0.77 13.76 16 30 H 0.02 1.05 7.24 -2.39 -0.02 1.04 16 31 H 0.00 -0.12 7.85 -2.39 -0.02 -0.13 16 32 H 0.08 2.61 8.11 -2.38 -0.02 2.59 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.08 2.53 7.00 -2.39 -0.02 2.51 16 35 H 0.08 2.13 8.07 -2.38 -0.02 2.11 16 36 H 0.11 1.50 7.55 -2.38 -0.02 1.48 16 37 H 0.12 1.38 7.99 -2.39 -0.02 1.36 16 38 H 0.05 1.19 7.95 -2.39 -0.02 1.17 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.12 1.68 5.83 -2.39 -0.01 1.66 16 50 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 52 H 0.08 2.33 7.63 -2.39 -0.02 2.31 16 Total: -1.00 -69.86 382.57 3.26 -66.60 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.86 Total: 15.20 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.87 Total: -1.66 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -4.46 Total: -108.76 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.04 Total: -18.84 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.86 3.26 -66.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036637613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.074 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds