Wall clock time and date at job start Tue Mar 31 2020 13:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99756 * 2 1 4 4 H 1.48500 * 109.47221 * 274.46918 * 3 2 1 5 5 H 1.48494 * 109.46900 * 34.47343 * 3 2 1 6 6 H 1.48507 * 109.46716 * 154.47071 * 3 2 1 7 7 C 1.38813 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00197 * 170.23869 * 7 2 1 9 9 N 1.36939 * 119.99245 * 350.24004 * 7 2 1 10 10 C 1.47777 * 125.96826 * 349.49784 * 9 7 2 11 11 C 1.55092 * 104.91253 * 201.61398 * 10 9 7 12 12 C 1.55230 * 100.54008 * 322.34752 * 11 10 9 13 13 H 1.08998 * 111.52948 * 158.76596 * 12 11 10 14 14 C 1.52117 * 107.74260 * 280.75960 * 12 11 10 15 15 N 1.46687 * 109.19674 * 160.59439 * 14 12 11 16 16 C 1.34775 * 120.97794 * 121.77004 * 15 14 12 17 17 O 1.21286 * 120.00001 * 359.72025 * 16 15 14 18 18 C 1.50702 * 120.00292 * 179.44693 * 16 15 14 19 19 C 1.52999 * 109.47177 * 180.27605 * 18 16 15 20 20 C 1.53004 * 109.47138 * 294.99877 * 19 18 16 21 21 C 1.52999 * 109.47138 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47071 * 59.99930 * 21 20 19 23 23 C 1.53004 * 109.47197 * 300.00034 * 22 21 20 24 24 C 1.52999 * 109.47138 * 60.00007 * 23 22 21 25 25 C 1.46531 * 118.04909 * 301.50098 * 15 14 12 26 26 C 1.51780 * 110.13609 * 54.03959 * 25 15 14 27 27 C 1.46257 * 125.95883 * 169.53833 * 9 7 2 28 28 H 1.08995 * 105.49755 * 71.44713 * 27 9 7 29 29 H 0.96998 * 120.00025 * 359.97438 * 1 2 3 30 30 H 1.08994 * 110.34857 * 320.47368 * 10 9 7 31 31 H 1.09002 * 110.34897 * 82.75794 * 10 9 7 32 32 H 1.08997 * 111.09814 * 80.89986 * 11 10 9 33 33 H 1.09003 * 111.09318 * 204.94169 * 11 10 9 34 34 H 1.09000 * 109.00529 * 40.97252 * 14 12 11 35 35 H 1.08995 * 109.97609 * 280.80758 * 14 12 11 36 36 H 1.09006 * 109.46826 * 300.27213 * 18 16 15 37 37 H 1.08991 * 109.47048 * 60.27316 * 18 16 15 38 38 H 1.09001 * 109.47475 * 54.99939 * 19 18 16 39 39 H 1.08998 * 109.46556 * 299.99735 * 20 19 18 40 40 H 1.08994 * 109.47075 * 59.99806 * 20 19 18 41 41 H 1.08994 * 109.47186 * 300.00282 * 21 20 19 42 42 H 1.08995 * 109.47383 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.47504 * 180.02562 * 22 21 20 44 44 H 1.09004 * 109.47302 * 60.00004 * 22 21 20 45 45 H 1.09001 * 109.46988 * 299.99647 * 23 22 21 46 46 H 1.09006 * 109.46995 * 179.97438 * 23 22 21 47 47 H 1.09005 * 109.47225 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47475 * 59.99938 * 24 23 22 49 49 H 1.09002 * 109.36562 * 174.24937 * 25 15 14 50 50 H 1.09004 * 109.35952 * 293.97361 * 25 15 14 51 51 H 1.09003 * 108.36288 * 79.85262 * 26 25 15 52 52 H 1.09007 * 108.36429 * 196.95419 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4032 2.1011 -1.3958 5 1 1.4981 2.6235 0.7925 6 1 3.5919 1.4148 0.6034 7 6 2.0104 -1.2021 -0.0005 8 1 3.0786 -1.2088 -0.1591 9 7 1.3405 -2.3795 0.2000 10 6 -0.0632 -2.5151 0.6419 11 6 -0.1578 -3.9440 1.2374 12 6 0.7610 -4.7216 0.2572 13 1 1.1242 -5.6490 0.6999 14 6 -0.0386 -4.9988 -1.0067 15 7 0.8852 -5.2996 -2.1057 16 6 0.8148 -6.4698 -2.7705 17 8 -0.0181 -7.2948 -2.4595 18 6 1.7669 -6.7509 -3.9044 19 6 1.4714 -8.1341 -4.4875 20 6 1.7674 -9.2050 -3.4355 21 6 1.4713 -10.5882 -4.0185 22 6 2.3522 -10.8231 -5.2473 23 6 2.0561 -9.7522 -6.2992 24 6 2.3522 -8.3690 -5.7163 25 6 1.8830 -4.2879 -2.4635 26 6 2.6867 -3.8906 -1.2388 27 6 1.8897 -3.7224 0.0150 28 1 2.5912 -3.8658 0.8367 29 1 -0.4850 0.8400 0.0004 30 1 -0.2942 -1.7708 1.4038 31 1 -0.7393 -2.4126 -0.2069 32 1 0.2233 -3.9697 2.2582 33 1 -1.1798 -4.3205 1.1932 34 1 -0.6261 -4.1151 -1.2561 35 1 -0.7043 -5.8471 -0.8477 36 1 1.6413 -5.9952 -4.6799 37 1 2.7914 -6.7242 -3.5335 38 1 0.4220 -8.1898 -4.7772 39 1 2.8168 -9.1494 -3.1460 40 1 1.1396 -9.0379 -2.5604 41 1 0.4219 -10.6435 -4.3079 42 1 1.6826 -11.3511 -3.2693 43 1 2.1409 -11.8083 -5.6629 44 1 3.4017 -10.7678 -4.9579 45 1 1.0067 -9.8075 -6.5886 46 1 2.6840 -9.9193 -7.1745 47 1 2.1409 -7.6060 -6.4656 48 1 3.4017 -8.3136 -5.4269 49 1 2.5542 -4.6940 -3.2202 50 1 1.3783 -3.4081 -2.8631 51 1 3.4453 -4.6535 -1.0637 52 1 3.1946 -2.9499 -1.4517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036637614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:11 Heat of formation + Delta-G solvation = -37.431435 kcal Electronic energy + Delta-G solvation = -28639.656294 eV Core-core repulsion = 25024.209130 eV Total energy + Delta-G solvation = -3615.447164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.34237 -38.95379 -37.76140 -35.13643 -33.08603 -32.53167 -31.75145 -30.80011 -29.52019 -28.11220 -27.02018 -25.04243 -23.86987 -22.70443 -22.57255 -21.65911 -20.17409 -19.86502 -19.35243 -18.01275 -16.90525 -16.37385 -15.83140 -15.50939 -15.25859 -15.05996 -14.53004 -14.27427 -14.20856 -14.03853 -13.97206 -13.64670 -12.96482 -12.96158 -12.60308 -12.38420 -12.26797 -12.17899 -11.93727 -11.74965 -11.62773 -11.41022 -11.26176 -11.21319 -11.03165 -10.97982 -10.77647 -10.54931 -10.50523 -10.34395 -10.18088 -10.12715 -10.04358 -9.86086 -9.70542 -9.64556 -9.33527 -8.60770 -8.19059 -6.80011 -5.78621 -3.10711 2.86630 3.29659 3.35816 3.42510 3.43966 4.45371 4.52772 4.55937 4.61671 4.82466 5.01419 5.10719 5.14637 5.22244 5.27305 5.28195 5.39230 5.39988 5.44470 5.44852 5.51614 5.53719 5.56471 5.59996 5.66255 5.74571 5.79737 5.88965 5.91271 5.96352 6.01602 6.07457 6.09713 6.13310 6.18540 6.25627 6.33057 6.34711 6.42355 6.43369 6.45997 6.58432 6.67690 6.77873 6.94122 7.00067 7.47818 7.55931 7.74411 7.76844 8.22538 8.44029 9.15176 9.78703 10.48389 11.34480 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.002917 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.294043 B = 9595.962884 C =10230.397843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.104 4.104 13 H 0.071 0.929 14 C 0.121 3.879 15 N -0.603 5.603 16 C 0.514 3.486 17 O -0.550 6.550 18 C -0.137 4.137 19 C -0.069 4.069 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.116 3.884 26 C -0.135 4.135 27 C 0.173 3.827 28 H 0.009 0.991 29 H 0.253 0.747 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.048 0.952 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 -16.847 -9.039 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.183 4.183 12 C -0.124 4.124 13 H 0.089 0.911 14 C -0.001 4.001 15 N -0.335 5.335 16 C 0.302 3.698 17 O -0.429 6.429 18 C -0.177 4.177 19 C -0.088 4.088 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.007 4.007 26 C -0.175 4.175 27 C 0.065 3.935 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.067 0.933 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.761 -17.029 -8.874 19.567 hybrid contribution 0.599 1.162 -0.024 1.308 sum 4.360 -15.867 -8.898 18.707 Atomic orbital electron populations 1.69954 1.04965 1.25201 1.56043 1.24817 0.95549 0.97737 1.02065 0.86187 0.78815 0.83761 0.77477 1.21667 1.21665 1.20632 1.18901 0.90984 0.82646 1.43029 0.90699 1.44544 1.10231 0.99367 1.77571 1.21465 0.85954 0.90651 0.97083 1.23107 0.98030 0.99091 0.98104 1.21920 0.97060 0.97713 0.95732 0.91081 1.21432 0.91665 1.01568 0.85480 1.48017 1.34536 1.16603 1.34334 1.20600 0.84838 0.80924 0.83407 1.90618 1.38366 1.45758 1.68142 1.21770 0.99748 0.99073 0.97062 1.20903 1.00433 0.92663 0.94818 1.21704 1.01268 0.93577 0.99148 1.21499 0.99790 0.97232 0.96931 1.21558 0.99932 0.98205 0.96050 1.21509 1.01480 0.94812 0.97747 1.21610 0.99794 0.96895 0.97001 1.21311 0.90590 0.91300 0.97449 1.21226 0.98517 1.01798 0.95942 1.19469 0.93267 0.86682 0.94040 0.97386 0.93712 0.92002 0.95197 0.91843 0.91953 0.90654 0.89754 0.89116 0.89117 0.90516 0.92847 0.89824 0.92075 0.92398 0.92478 0.92214 0.92050 0.92280 0.92039 0.91979 0.90729 0.91043 0.93343 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 10.77 55.49 0.60 -25.41 16 2 C 0.00 -0.12 5.41 -17.43 -0.09 -0.22 16 3 Si 0.91 21.39 29.57 -169.99 -5.03 16.36 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -5.97 9.38 -15.06 -0.14 -6.11 16 8 H 0.08 1.91 7.38 -52.49 -0.39 1.52 16 9 N -0.59 -14.20 3.32 -165.69 -0.55 -14.75 16 10 C 0.17 4.02 4.94 -2.24 -0.01 4.01 16 11 C -0.14 -2.66 6.50 -24.44 -0.16 -2.82 16 12 C -0.10 -1.85 3.47 -90.06 -0.31 -2.16 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.12 2.09 5.58 -4.39 -0.02 2.06 16 15 N -0.60 -9.56 2.94 -174.78 -0.51 -10.07 16 16 C 0.51 7.73 7.42 -10.99 -0.08 7.65 16 17 O -0.55 -9.71 13.39 5.55 0.07 -9.64 16 18 C -0.14 -1.53 3.53 -27.88 -0.10 -1.63 16 19 C -0.07 -0.74 1.84 -90.62 -0.17 -0.91 16 20 C -0.12 -1.34 4.94 -26.73 -0.13 -1.47 16 21 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 22 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 23 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 24 C -0.12 -0.99 5.21 -26.73 -0.14 -1.13 16 25 C 0.12 1.76 6.38 -4.64 -0.03 1.73 16 26 C -0.13 -2.29 5.62 -29.07 -0.16 -2.46 16 27 C 0.17 3.43 2.68 -69.95 -0.19 3.24 16 28 H 0.01 0.18 8.08 -51.93 -0.42 -0.24 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.06 1.61 7.17 -51.93 -0.37 1.24 16 31 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.03 7.98 -51.93 -0.41 0.61 16 34 H 0.08 1.44 6.50 -51.93 -0.34 1.10 16 35 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 37 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 38 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.88 5.95 -51.93 -0.31 0.57 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.08 1.54 6.83 -51.93 -0.35 1.18 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -29.35 379.53 -11.40 -40.75 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -9.48 Total: 0.80 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.22 Total: -3.76 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.47 Total: -50.23 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.35 -11.40 -40.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036637614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.319 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds