Wall clock time and date at job start Tue Mar 31 2020 13:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00189 * 2 1 4 4 H 1.48498 * 109.46957 * 274.05556 * 3 2 1 5 5 H 1.48496 * 109.47003 * 34.05114 * 3 2 1 6 6 H 1.48500 * 109.47058 * 154.05573 * 3 2 1 7 7 C 1.38809 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99794 * 197.61943 * 7 2 1 9 9 N 1.36942 * 120.00444 * 17.61693 * 7 2 1 10 10 C 1.46932 * 120.54750 * 28.25910 * 9 7 2 11 11 C 1.53335 * 108.68404 * 125.63838 * 10 9 7 12 12 C 1.52109 * 109.44618 * 53.29776 * 11 10 9 13 13 C 1.54392 * 110.50542 * 64.08401 * 12 11 10 14 14 C 1.54458 * 102.87627 * 152.63370 * 13 12 11 15 15 N 1.47085 * 107.29382 * 338.50230 * 14 13 12 16 16 C 1.34777 * 125.62949 * 179.03003 * 15 14 13 17 17 O 1.21281 * 120.00100 * 179.97438 * 16 15 14 18 18 C 1.50696 * 119.99936 * 359.97438 * 16 15 14 19 19 C 1.52994 * 109.47397 * 179.97438 * 18 16 15 20 20 C 1.54271 * 110.03299 * 292.16386 * 19 18 16 21 21 C 1.54890 * 104.19618 * 217.10499 * 20 19 18 22 22 C 1.54887 * 102.75041 * 37.94256 * 21 20 19 23 23 C 1.53872 * 110.03564 * 174.99815 * 19 18 16 24 24 C 1.47578 * 108.74423 * 359.00781 * 15 14 13 25 25 C 1.52106 * 111.59831 * 300.69360 * 12 11 10 26 26 C 1.46938 * 120.55221 * 208.24181 * 9 7 2 27 27 H 0.96998 * 119.99422 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.60021 * 5.87721 * 10 9 7 29 29 H 1.08999 * 109.59862 * 245.39669 * 10 9 7 30 30 H 1.08998 * 109.47961 * 293.30550 * 11 10 9 31 31 H 1.08999 * 109.47663 * 173.28713 * 11 10 9 32 32 H 1.09003 * 110.73583 * 270.98171 * 13 12 11 33 33 H 1.09012 * 110.73030 * 34.28864 * 13 12 11 34 34 H 1.08999 * 109.87817 * 97.92021 * 14 13 12 35 35 H 1.08994 * 109.87825 * 219.07793 * 14 13 12 36 36 H 1.09004 * 109.46844 * 299.99876 * 18 16 15 37 37 H 1.09007 * 109.47223 * 59.99543 * 18 16 15 38 38 H 1.09001 * 110.01499 * 53.60474 * 19 18 16 39 39 H 1.09006 * 110.48250 * 335.78416 * 20 19 18 40 40 H 1.08997 * 110.48497 * 98.42272 * 20 19 18 41 41 H 1.08996 * 110.75214 * 279.62476 * 21 20 19 42 42 H 1.09001 * 110.91225 * 156.32867 * 21 20 19 43 43 H 1.08990 * 110.48603 * 203.38176 * 22 21 20 44 44 H 1.08998 * 110.60116 * 80.78957 * 22 21 20 45 45 H 1.08997 * 110.03649 * 238.57217 * 23 19 18 46 46 H 1.09007 * 110.03154 * 359.95346 * 23 19 18 47 47 H 1.08999 * 110.37921 * 264.49485 * 24 15 14 48 48 H 1.09007 * 110.37360 * 142.14815 * 24 15 14 49 49 H 1.08998 * 109.47890 * 179.30189 * 25 12 11 50 50 H 1.09004 * 109.47067 * 299.31167 * 25 12 11 51 51 H 1.08998 * 109.59908 * 114.60530 * 26 9 7 52 52 H 1.08995 * 109.73169 * 354.20352 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4120 2.0959 -1.3966 5 1 1.4932 2.6264 0.7839 6 1 3.5881 1.4168 0.6125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0523 -1.2242 0.2826 9 7 1.3737 -2.3602 -0.3600 10 6 0.2410 -2.3303 -1.2954 11 6 0.5358 -3.2898 -2.4546 12 6 0.8843 -4.6625 -1.8996 13 6 -0.3254 -5.2682 -1.1558 14 6 -0.0917 -6.7883 -1.2990 15 7 0.8005 -6.9868 -2.4514 16 6 1.2582 -8.1745 -2.8945 17 8 1.9919 -8.2200 -3.8592 18 6 0.8583 -9.4460 -2.1914 19 6 1.5090 -10.6415 -2.8900 20 6 0.9024 -10.8262 -4.2963 21 6 0.8328 -12.3625 -4.4812 22 6 0.4345 -12.8590 -3.0691 23 6 1.2116 -11.9339 -2.1098 24 6 1.1113 -5.6709 -3.0428 25 6 2.0981 -4.6049 -0.9847 26 6 1.8124 -3.6531 0.1831 27 1 -0.4849 0.8401 -0.0004 28 1 0.1121 -1.3192 -1.6814 29 1 -0.6665 -2.6464 -0.7809 30 1 1.3751 -2.9094 -3.0367 31 1 -0.3436 -3.3688 -3.0936 32 1 -0.3199 -4.9741 -0.1062 33 1 -1.2595 -4.9746 -1.6350 34 1 0.3777 -7.1778 -0.3956 35 1 -1.0410 -7.2944 -1.4737 36 1 1.1893 -9.4067 -1.1536 37 1 -0.2260 -9.5531 -2.2231 38 1 2.5858 -10.4895 -2.9641 39 1 -0.0960 -10.3909 -4.3413 40 1 1.5486 -10.3799 -5.0521 41 1 1.8050 -12.7610 -4.7708 42 1 0.0724 -12.6321 -5.2141 43 1 0.7393 -13.8960 -2.9294 44 1 -0.6393 -12.7537 -2.9143 45 1 2.1440 -12.4097 -1.8059 46 1 0.6042 -11.7093 -1.2329 47 1 0.4385 -5.4599 -3.8740 48 1 2.1488 -5.6400 -3.3758 49 1 2.3092 -5.6017 -0.5977 50 1 2.9595 -4.2430 -1.5462 51 1 1.0262 -4.0713 0.8117 52 1 2.7184 -3.5161 0.7733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040586201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:41 Heat of formation + Delta-G solvation = -52.778173 kcal Electronic energy + Delta-G solvation = -28177.812205 eV Core-core repulsion = 24561.699556 eV Total energy + Delta-G solvation = -3616.112648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61477 -40.16331 -38.59210 -37.30449 -34.74051 -32.94971 -32.21865 -31.55593 -30.58234 -29.50424 -28.81444 -26.80560 -25.43231 -24.08820 -23.72398 -22.54484 -21.56200 -20.67358 -20.17394 -19.54064 -18.52396 -17.72629 -17.14670 -17.00045 -16.83405 -16.02915 -15.88802 -15.58798 -15.46782 -15.14581 -15.01256 -14.54835 -14.35727 -14.31307 -14.16245 -13.79617 -13.65515 -13.43755 -13.16220 -13.01619 -12.89733 -12.59729 -12.50836 -12.32432 -12.09100 -12.04916 -11.90993 -11.87600 -11.81062 -11.79568 -11.64074 -11.50142 -11.41386 -11.25767 -11.13328 -11.09683 -10.72251 -10.49156 -9.59721 -8.63351 -7.86452 -5.30378 1.45611 1.47942 1.56032 1.68654 2.04209 2.51509 3.25800 3.42212 3.63136 3.69047 3.74156 3.74758 3.82402 3.86267 4.02464 4.26996 4.29967 4.36848 4.40891 4.44194 4.53186 4.58430 4.60976 4.64188 4.68819 4.73868 4.77586 4.79214 4.87324 4.90029 4.92276 4.95145 4.99089 5.05369 5.08931 5.13414 5.15629 5.19278 5.27671 5.29602 5.36005 5.40194 5.40964 5.44136 5.52663 5.56188 5.57066 5.67430 5.81762 6.41418 6.60448 7.17657 7.20867 7.89771 8.39913 9.19090 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.039341 B = 0.002402 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.556112 B =11656.101023 C =11698.621263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.048 4.048 3 Si 0.961 3.039 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.060 0.940 9 N -0.610 5.610 10 C 0.182 3.818 11 C -0.115 4.115 12 C -0.053 4.053 13 C -0.119 4.119 14 C 0.106 3.894 15 N -0.617 5.617 16 C 0.519 3.481 17 O -0.586 6.586 18 C -0.121 4.121 19 C -0.078 4.078 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.117 4.117 24 C 0.121 3.879 25 C -0.102 4.102 26 C 0.146 3.854 27 H 0.250 0.750 28 H 0.048 0.952 29 H 0.010 0.990 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.042 0.958 51 H 0.029 0.971 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -24.419 -3.489 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.243 4.243 3 Si 0.789 3.211 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.154 4.154 12 C -0.054 4.054 13 C -0.157 4.157 14 C -0.016 4.016 15 N -0.350 5.350 16 C 0.310 3.690 17 O -0.467 6.467 18 C -0.160 4.160 19 C -0.097 4.097 20 C -0.152 4.152 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.002 4.002 25 C -0.141 4.141 26 C 0.020 3.980 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.046 0.954 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.692 -24.399 -3.976 24.867 hybrid contribution 0.582 1.707 -0.179 1.812 sum -2.110 -22.692 -4.155 23.165 Atomic orbital electron populations 1.70163 1.06385 1.25724 1.55322 1.25699 0.96033 1.01164 1.01438 0.85352 0.78286 0.80124 0.77291 1.21539 1.22037 1.19563 1.19462 0.92859 0.86403 1.40430 0.92206 1.44295 1.37025 1.02093 1.49911 1.20567 0.88149 0.97188 0.88431 1.21841 1.00483 0.94702 0.98379 1.20856 0.96139 0.93751 0.94626 1.22651 0.97639 0.93578 1.01811 1.22234 0.94311 0.96639 0.88374 1.48727 1.48930 1.05595 1.31769 1.21117 0.79197 0.84931 0.83801 1.90670 1.38941 1.87274 1.29814 1.21885 1.03651 0.89633 1.00877 1.21527 0.99352 0.93852 0.94944 1.22343 0.99921 0.96471 0.96446 1.22527 1.01356 0.94625 0.97919 1.22356 1.00433 0.99209 0.93877 1.22213 1.00851 0.93916 0.98479 1.22103 1.00282 0.82063 0.95787 1.21636 0.96353 0.99015 0.97127 1.21054 0.97256 0.85817 0.93833 0.94126 0.93337 0.97176 0.93867 0.91034 0.90041 0.90191 0.89653 0.88866 0.86981 0.86801 0.92597 0.92186 0.93809 0.91964 0.91189 0.90880 0.90887 0.91468 0.89977 0.91543 0.92643 0.91046 0.93929 0.95367 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 11.23 21.65 0.24 -53.81 16 2 C -0.05 -2.64 4.90 84.86 0.42 -2.23 16 3 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.26 -14.29 9.57 84.03 0.80 -13.48 16 8 H 0.06 3.25 7.89 -2.91 -0.02 3.23 16 9 N -0.61 -29.75 2.98 -698.50 -2.08 -31.83 16 10 C 0.18 8.37 5.06 86.41 0.44 8.81 16 11 C -0.11 -4.11 4.84 30.41 0.15 -3.96 16 12 C -0.05 -1.58 0.55 -51.92 -0.03 -1.61 16 13 C -0.12 -2.93 4.92 31.56 0.16 -2.78 16 14 C 0.11 1.97 6.11 86.76 0.53 2.50 16 15 N -0.62 -14.88 3.32 -812.55 -2.70 -17.58 16 16 C 0.52 13.10 7.63 87.66 0.67 13.77 16 17 O -0.59 -19.81 15.09 -3.03 -0.05 -19.86 16 18 C -0.12 -1.95 4.02 29.84 0.12 -1.83 16 19 C -0.08 -1.36 2.55 -10.07 -0.03 -1.39 16 20 C -0.11 -2.20 5.43 31.67 0.17 -2.03 16 21 C -0.13 -1.85 6.91 31.88 0.22 -1.63 16 22 C -0.12 -1.37 6.83 31.67 0.22 -1.15 16 23 C -0.12 -1.41 6.46 31.32 0.20 -1.21 16 24 C 0.12 3.43 5.81 86.55 0.50 3.93 16 25 C -0.10 -3.35 4.85 30.41 0.15 -3.20 16 26 C 0.15 5.75 6.20 86.41 0.54 6.29 16 27 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.05 2.59 6.04 -2.39 -0.01 2.58 16 29 H 0.01 0.48 7.62 -2.39 -0.02 0.46 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 32 H 0.08 2.20 6.17 -2.39 -0.01 2.18 16 33 H 0.08 1.90 7.98 -2.38 -0.02 1.88 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.36 8.00 -2.38 -0.02 1.34 16 38 H 0.06 1.24 7.92 -2.39 -0.02 1.22 16 39 H 0.06 1.13 7.76 -2.38 -0.02 1.11 16 40 H 0.04 1.08 7.66 -2.39 -0.02 1.07 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.74 7.67 -2.38 -0.02 0.72 16 47 H 0.07 1.85 7.99 -2.39 -0.02 1.83 16 48 H 0.06 1.79 7.94 -2.38 -0.02 1.77 16 49 H 0.07 2.03 7.82 -2.39 -0.02 2.01 16 50 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.03 1.08 6.55 -2.39 -0.02 1.06 16 52 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 Total: -1.00 -67.20 386.92 3.53 -63.66 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.86 Total: 13.69 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.22 Total: -1.22 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -4.53 Total: -103.22 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.20 3.53 -63.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040586201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.886 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds