Wall clock time and date at job start Tue Mar 31 2020 13:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47138 * 269.99925 * 3 2 1 5 5 H 1.48498 * 109.46970 * 30.00366 * 3 2 1 6 6 H 1.48500 * 109.46616 * 149.99846 * 3 2 1 7 7 C 1.38812 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99747 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.47168 * 125.25490 * 359.12965 * 9 7 2 11 11 C 1.53694 * 107.73269 * 180.40743 * 10 9 7 12 12 H 1.09001 * 113.05249 * 254.94381 * 11 10 9 13 13 C 1.53728 * 109.34448 * 128.69694 * 11 10 9 14 14 N 1.46670 * 107.93753 * 266.25244 * 13 11 10 15 15 C 1.34779 * 125.33387 * 180.54579 * 14 13 11 16 16 O 1.21280 * 120.00034 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99746 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47246 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47015 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46623 * 184.99741 * 19 18 17 21 21 C 1.52999 * 109.46626 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.46991 * 60.00378 * 21 20 19 23 23 C 1.52996 * 109.47131 * 299.99311 * 22 21 20 24 24 C 1.52997 * 109.47317 * 64.99921 * 19 18 17 25 25 C 1.46782 * 109.32585 * 0.80417 * 14 13 11 26 26 C 1.54162 * 106.52396 * 341.09648 * 25 14 13 27 27 H 1.08999 * 113.23282 * 266.01605 * 26 25 14 28 28 C 1.46743 * 125.32831 * 179.97438 * 9 7 2 29 29 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.08994 * 108.95469 * 61.38362 * 10 9 7 31 31 H 1.09009 * 110.83709 * 300.50459 * 10 9 7 32 32 H 1.08996 * 109.77531 * 146.62918 * 13 11 10 33 33 H 1.08999 * 109.76867 * 25.86341 * 13 11 10 34 34 H 1.08999 * 109.47646 * 59.99720 * 17 15 14 35 35 H 1.09000 * 109.47343 * 300.00063 * 17 15 14 36 36 H 1.08994 * 109.47229 * 59.99745 * 18 17 15 37 37 H 1.08998 * 109.46376 * 300.00186 * 18 17 15 38 38 H 1.09001 * 109.47362 * 304.99190 * 19 18 17 39 39 H 1.08993 * 109.46955 * 300.00075 * 20 19 18 40 40 H 1.09000 * 109.47050 * 59.99904 * 20 19 18 41 41 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.47839 * 299.99931 * 21 20 19 43 43 H 1.09001 * 109.47289 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.47611 * 59.99933 * 22 21 20 45 45 H 1.08996 * 109.47452 * 300.00000 * 23 22 21 46 46 H 1.09000 * 109.47054 * 180.02562 * 23 22 21 47 47 H 1.09002 * 109.47153 * 299.99641 * 24 19 18 48 48 H 1.08996 * 109.46952 * 59.99813 * 24 19 18 49 49 H 1.08995 * 110.02502 * 100.51502 * 25 14 13 50 50 H 1.09000 * 110.02564 * 221.93191 * 25 14 13 51 51 H 1.09007 * 110.01094 * 42.33555 * 28 9 7 52 52 H 1.09004 * 110.01144 * 280.97119 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5476 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1399 -2.5229 0.0183 11 6 -0.4719 -4.0236 0.0218 12 1 -0.8302 -4.3837 -0.9425 13 6 -1.4536 -4.3252 1.1658 14 7 -0.6709 -4.7369 2.3359 15 6 -1.1834 -5.0926 3.5306 16 8 -2.3841 -5.0871 3.7012 17 6 -0.2644 -5.4969 4.6544 18 6 -1.0946 -5.8504 5.8901 19 6 -0.1615 -6.2603 7.0312 20 6 -0.9934 -6.7326 8.2254 21 6 -0.0602 -7.1431 9.3663 22 6 0.7946 -5.9443 9.7824 23 6 1.6263 -5.4721 8.5883 24 6 0.6929 -5.0612 7.4471 25 6 0.7582 -4.6950 2.0036 26 6 0.8512 -4.7079 0.4648 27 1 0.9782 -5.7079 0.0502 28 6 1.9380 -3.7216 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5492 -2.0571 -0.8781 31 1 -0.5621 -2.0500 0.9050 32 1 -2.1273 -5.1297 0.8711 33 1 -2.0289 -3.4304 1.4034 34 1 0.4059 -4.6706 4.8909 35 1 0.3215 -6.3643 4.3505 36 1 -1.7646 -6.6769 5.6534 37 1 -1.6808 -4.9832 6.1941 38 1 0.4870 -7.0702 6.6972 39 1 -1.6419 -5.9227 8.5594 40 1 -1.6021 -7.5868 7.9291 41 1 -0.6528 -7.4799 10.2169 42 1 0.5880 -7.9530 9.0321 43 1 1.4590 -6.2366 10.5955 44 1 0.1463 -5.1343 10.1168 45 1 2.2746 -6.2820 8.2540 46 1 2.2357 -4.6183 8.8848 47 1 1.2855 -4.7247 6.5964 48 1 0.0443 -4.2514 7.7812 49 1 1.2070 -3.7842 2.3998 50 1 1.2627 -5.5695 2.4144 51 1 2.7817 -3.7445 0.6903 52 1 2.2708 -3.9792 -1.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049201983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:07 Heat of formation + Delta-G solvation = -43.345667 kcal Electronic energy + Delta-G solvation = -27888.633443 eV Core-core repulsion = 24272.929819 eV Total energy + Delta-G solvation = -3615.703624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.18292 -39.04824 -38.05463 -34.89728 -33.94171 -32.27351 -30.98980 -30.62333 -29.44950 -29.17431 -25.79582 -25.48138 -24.36092 -22.92552 -22.49779 -20.91207 -20.11869 -19.90959 -19.28561 -18.90682 -17.08609 -16.64158 -16.10552 -15.67745 -15.24425 -14.82760 -14.61152 -14.33960 -14.27424 -14.14899 -13.69959 -13.51498 -13.16356 -12.95882 -12.73250 -12.48103 -12.29961 -12.03682 -11.98643 -11.88005 -11.66720 -11.48597 -11.47048 -11.31188 -11.22748 -10.90759 -10.87414 -10.82763 -10.59228 -10.41141 -10.22445 -10.12151 -10.10272 -10.07909 -9.85595 -9.65364 -9.52757 -8.62725 -8.27308 -6.86296 -5.74513 -3.08529 2.89689 3.30023 3.38175 3.43107 3.45379 4.43008 4.47217 4.50529 4.53724 4.69927 4.86182 4.89233 4.95969 5.08962 5.14741 5.21201 5.27660 5.30590 5.33707 5.36249 5.43442 5.48688 5.50405 5.54962 5.59952 5.66542 5.73477 5.76282 5.81320 5.86311 5.89218 5.96234 5.96728 5.98176 6.03683 6.10971 6.15049 6.18117 6.26762 6.29111 6.38183 6.39717 6.54668 6.57251 6.65813 6.80269 7.54031 7.56104 7.79241 7.84500 8.23188 8.43676 9.18660 9.79743 10.43376 11.36925 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.002909 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.425777 B = 9621.527113 C =10665.539394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.185 3.815 11 C -0.124 4.124 12 H 0.090 0.910 13 C 0.120 3.880 14 N -0.609 5.609 15 C 0.524 3.476 16 O -0.551 6.551 17 C -0.136 4.136 18 C -0.098 4.098 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.119 4.119 25 C 0.113 3.887 26 C -0.111 4.111 27 H 0.088 0.912 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.037 0.963 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -15.393 13.590 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.061 3.939 11 C -0.143 4.143 12 H 0.108 0.892 13 C -0.003 4.003 14 N -0.342 5.342 15 C 0.313 3.687 16 O -0.430 6.430 17 C -0.176 4.176 18 C -0.136 4.136 19 C -0.105 4.105 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.010 4.010 26 C -0.131 4.131 27 H 0.106 0.894 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.083 0.917 51 H 0.055 0.945 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.881 -15.167 13.757 20.496 hybrid contribution 0.526 0.975 -0.136 1.116 sum 1.407 -14.192 13.621 19.721 Atomic orbital electron populations 1.69955 1.04880 1.25116 1.56817 1.24805 0.95709 0.97719 1.02091 0.86124 0.78564 0.83511 0.77577 1.21583 1.21694 1.20696 1.19026 0.90414 0.82329 1.44127 0.90397 1.44353 1.01474 0.99915 1.87274 1.21207 0.84431 0.86766 1.01531 1.23158 0.93821 1.00459 0.96903 0.89191 1.21800 0.94016 0.99630 0.84813 1.48323 1.08202 1.65974 1.11720 1.20357 0.89007 0.77021 0.82308 1.90670 1.15856 1.54547 1.81915 1.21704 0.98790 1.03108 0.93988 1.21381 0.97260 1.02408 0.92529 1.21189 0.96712 0.97862 0.94728 1.21571 0.97686 1.00973 0.94943 1.21528 0.98139 0.97860 0.98119 1.21541 0.98503 0.98113 0.97620 1.21540 0.97804 1.00818 0.95552 1.21683 0.98058 0.97773 0.98147 1.22095 0.81367 1.01627 0.95923 1.22934 0.97275 0.99079 0.93818 0.89363 1.21142 0.93644 0.85714 0.97500 0.93687 0.93553 0.93194 0.92473 0.91017 0.88793 0.89307 0.91326 0.91189 0.91247 0.91900 0.92035 0.92293 0.92144 0.92387 0.92083 0.92113 0.92130 0.91603 0.91844 0.90389 0.91715 0.94536 0.96158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.25 55.49 0.57 -26.13 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.23 10.25 -15.06 -0.15 -6.39 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.70 3.39 -171.49 -0.58 -15.28 16 10 C 0.19 4.33 4.77 -3.32 -0.02 4.32 16 11 C -0.12 -2.21 4.01 -88.60 -0.36 -2.56 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.12 2.10 6.23 -3.57 -0.02 2.08 16 14 N -0.61 -10.11 3.31 -172.16 -0.57 -10.68 16 15 C 0.52 8.60 7.84 -10.98 -0.09 8.51 16 16 O -0.55 -10.86 16.29 5.56 0.09 -10.77 16 17 C -0.14 -1.63 4.49 -27.88 -0.13 -1.76 16 18 C -0.10 -1.10 3.97 -26.73 -0.11 -1.21 16 19 C -0.09 -0.78 2.19 -90.62 -0.20 -0.98 16 20 C -0.11 -0.96 5.20 -26.73 -0.14 -1.10 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 23 C -0.12 -0.96 5.92 -26.71 -0.16 -1.12 16 24 C -0.12 -1.08 4.96 -26.71 -0.13 -1.21 16 25 C 0.11 1.71 5.88 -3.28 -0.02 1.69 16 26 C -0.11 -1.76 4.14 -88.24 -0.37 -2.13 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 C 0.15 2.80 6.41 -3.42 -0.02 2.78 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 1.22 7.40 -51.93 -0.38 0.83 16 31 H 0.05 1.32 6.58 -51.92 -0.34 0.98 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.41 7.44 -51.93 -0.39 1.02 16 34 H 0.09 1.08 6.56 -51.93 -0.34 0.74 16 35 H 0.09 0.89 7.88 -51.93 -0.41 0.48 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.61 6.56 -51.93 -0.34 0.27 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 50 H 0.06 0.78 7.61 -51.93 -0.40 0.38 16 51 H 0.04 0.67 7.98 -51.93 -0.41 0.25 16 52 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -31.07 389.79 -11.67 -42.74 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -9.72 Total: -1.09 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.31 Total: -1.47 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.58 Total: -52.09 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.07 -11.67 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049201983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.601 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds