Wall clock time and date at job start Tue Mar 31 2020 13:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.88754 * 23.93049 * 10 9 7 12 12 C 1.53957 * 113.66372 * 252.46113 * 10 9 7 13 13 C 1.53947 * 87.29654 * 220.79461 * 12 10 9 14 14 H 1.09002 * 113.66143 * 139.20782 * 13 12 10 15 15 N 1.46501 * 113.66461 * 270.26059 * 13 12 10 16 16 C 1.34776 * 120.00046 * 252.18692 * 15 13 12 17 17 O 1.21278 * 119.99818 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99969 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.46866 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.47603 * 295.00208 * 19 18 16 21 21 C 1.53001 * 109.47308 * 180.02562 * 20 19 18 22 22 C 1.52992 * 109.46957 * 59.99937 * 21 20 19 23 23 C 1.53003 * 109.47328 * 299.99772 * 22 21 20 24 24 C 1.52999 * 109.46784 * 174.99729 * 19 18 16 25 25 C 1.52908 * 113.66357 * 155.27728 * 10 9 7 26 26 C 1.52908 * 121.13642 * 13.64835 * 25 10 9 27 27 C 1.53946 * 86.78542 * 209.38235 * 26 25 10 28 28 C 1.52910 * 121.13509 * 265.09062 * 25 10 9 29 29 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09000 * 113.57648 * 335.40139 * 12 10 9 32 32 H 1.08999 * 113.57776 * 106.19339 * 12 10 9 33 33 H 0.96994 * 119.99935 * 72.18847 * 15 13 12 34 34 H 1.08999 * 109.46640 * 300.00124 * 18 16 15 35 35 H 1.08994 * 109.46820 * 60.00003 * 18 16 15 36 36 H 1.09004 * 109.46879 * 55.00283 * 19 18 16 37 37 H 1.09002 * 109.46735 * 300.00376 * 20 19 18 38 38 H 1.08998 * 109.47027 * 59.99848 * 20 19 18 39 39 H 1.08994 * 109.46702 * 299.99842 * 21 20 19 40 40 H 1.09004 * 109.46925 * 180.02562 * 21 20 19 41 41 H 1.09008 * 109.46789 * 180.02562 * 22 21 20 42 42 H 1.08994 * 109.47493 * 60.00389 * 22 21 20 43 43 H 1.09002 * 109.46962 * 300.00168 * 23 22 21 44 44 H 1.08998 * 109.47193 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.47402 * 300.00326 * 24 19 18 46 46 H 1.09004 * 109.46961 * 60.00604 * 24 19 18 47 47 H 1.09002 * 113.66478 * 323.85928 * 26 25 10 48 48 H 1.09008 * 113.65934 * 94.91137 * 26 25 10 49 49 H 1.08996 * 113.58314 * 270.13495 * 27 26 25 50 50 H 1.08999 * 113.65166 * 139.34935 * 27 26 25 51 51 H 1.09004 * 113.66092 * 265.08702 * 28 25 10 52 52 H 1.08994 * 113.66382 * 36.05415 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0664 -3.5659 0.3985 12 6 1.9937 -4.4014 -1.3511 13 6 1.8251 -5.7000 -0.5416 14 1 1.0940 -6.3882 -0.9660 15 7 3.0932 -6.3509 -0.2033 16 6 3.4512 -7.4926 -0.8237 17 8 2.7237 -7.9807 -1.6624 18 6 4.7559 -8.1619 -0.4761 19 6 4.9185 -9.4298 -1.3169 20 6 3.8324 -10.4375 -0.9355 21 6 3.9955 -11.7056 -1.7759 22 6 5.3732 -12.3172 -1.5142 23 6 6.4594 -11.3094 -1.8957 24 6 6.2964 -10.0415 -1.0558 25 6 1.2654 -4.8257 0.5811 26 6 -0.2406 -4.7175 0.8230 27 6 -0.0394 -5.7165 1.9768 28 6 1.4190 -5.2284 2.0482 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 1.1202 -4.1445 -1.9502 32 1 2.9238 -4.3587 -1.9178 33 1 3.6751 -5.9603 0.4672 34 1 5.5805 -7.4798 -0.6832 35 1 4.7588 -8.4249 0.5816 36 1 4.8266 -9.1791 -2.3738 37 1 3.9243 -10.6881 0.1213 38 1 2.8509 -10.0016 -1.1215 39 1 3.9039 -11.4553 -2.8327 40 1 3.2214 -12.4234 -1.5044 41 1 5.4896 -13.2204 -2.1133 42 1 5.4649 -12.5675 -0.4573 43 1 6.3678 -11.0592 -2.9526 44 1 7.4410 -11.7453 -1.7097 45 1 7.0701 -9.3235 -1.3276 46 1 6.3883 -10.2922 0.0010 47 1 -0.5611 -3.7287 1.1512 48 1 -0.8444 -5.1100 0.0047 49 1 -0.1359 -6.7588 1.6730 50 1 -0.6225 -5.4799 2.8668 51 1 2.1410 -6.0291 2.2087 52 1 1.5666 -4.3834 2.7206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078548784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:18 Heat of formation + Delta-G solvation = -15.129719 kcal Electronic energy + Delta-G solvation = -27770.645570 eV Core-core repulsion = 24156.165482 eV Total energy + Delta-G solvation = -3614.480089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69603 -39.55433 -38.01393 -35.04687 -34.04617 -32.92527 -32.14587 -30.88169 -29.84184 -27.38585 -25.47231 -24.65589 -24.03374 -22.83114 -22.54685 -21.63719 -20.56298 -19.96430 -19.85144 -17.90119 -17.26785 -16.81568 -15.77700 -15.54634 -15.48718 -15.13878 -14.83786 -14.47540 -14.34072 -14.17055 -13.89985 -13.66357 -13.32577 -12.67347 -12.62281 -12.49725 -12.34923 -12.22760 -12.05054 -11.86949 -11.68387 -11.61778 -11.36747 -11.28916 -11.12339 -10.94172 -10.82820 -10.67601 -10.62168 -10.42785 -10.22366 -10.18496 -10.11313 -9.84590 -9.71821 -9.50313 -9.33274 -8.82998 -8.67936 -6.96719 -5.80609 -3.08853 2.73180 3.24086 3.40986 3.46261 3.47750 4.44535 4.52527 4.53238 4.56485 4.76700 4.82494 4.91947 4.98518 5.04201 5.05500 5.17460 5.22424 5.25896 5.30007 5.32665 5.37591 5.42578 5.45944 5.49583 5.56075 5.65227 5.71689 5.84140 5.86589 5.92735 5.93860 5.99982 6.02336 6.02932 6.06736 6.10711 6.16164 6.19691 6.22319 6.33496 6.36050 6.38572 6.43719 6.54910 6.67148 6.78659 6.95741 7.07925 7.66294 7.67576 8.36180 8.38372 9.49728 10.07954 10.42683 11.41751 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.002571 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.151730 B =10889.494762 C =11658.066318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.181 3.819 11 H 0.074 0.926 12 C -0.175 4.175 13 C 0.143 3.857 14 H 0.095 0.905 15 N -0.706 5.706 16 C 0.513 3.487 17 O -0.540 6.540 18 C -0.139 4.139 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.125 4.125 26 C -0.105 4.105 27 C -0.140 4.140 28 C -0.122 4.122 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.058 0.942 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 -22.292 1.487 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.347 5.347 10 C 0.068 3.932 11 H 0.092 0.908 12 C -0.217 4.217 13 C 0.037 3.963 14 H 0.113 0.887 15 N -0.356 5.356 16 C 0.300 3.700 17 O -0.418 6.418 18 C -0.179 4.179 19 C -0.088 4.088 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.128 4.128 26 C -0.143 4.143 27 C -0.177 4.177 28 C -0.160 4.160 29 H 0.065 0.935 30 H 0.222 0.778 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.076 0.924 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.463 -22.450 0.907 24.380 hybrid contribution 0.466 1.241 0.268 1.353 sum 9.929 -21.208 1.175 23.447 Atomic orbital electron populations 1.69656 1.05096 1.25731 1.57482 1.24749 0.95514 0.97721 1.02864 0.86202 0.78638 0.83884 0.77526 1.21725 1.21790 1.20794 1.19281 0.91011 0.84229 1.42874 0.91219 1.42372 1.05878 0.99623 1.86785 1.21381 0.94609 0.84996 0.92198 0.90839 1.24285 1.01802 0.95463 1.00186 1.21483 0.85285 0.93368 0.96125 0.88738 1.45681 1.22176 1.25220 1.42522 1.20653 0.87975 0.80277 0.81115 1.90655 1.54114 1.64131 1.32880 1.21770 0.95725 0.98188 1.02197 1.20894 0.94708 0.93005 1.00238 1.21706 1.00305 0.94885 0.98814 1.21500 0.96429 0.97099 1.00488 1.21554 0.95145 0.97883 1.01168 1.21502 0.98354 0.95679 1.00074 1.21597 0.96554 0.96983 1.00144 1.23435 0.97798 0.97945 0.93616 1.22461 0.93803 1.00261 0.97744 1.22816 0.97172 0.98768 0.98972 1.22624 0.96449 1.00348 0.96565 0.93458 0.77808 0.89714 0.92416 0.76621 0.88947 0.89092 0.90392 0.92846 0.89853 0.92021 0.92354 0.92423 0.92221 0.92004 0.92235 0.92005 0.91999 0.88480 0.91915 0.91030 0.91940 0.92350 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.71 -17.10 5.30 -52.99 -0.28 -17.38 16 10 C 0.18 3.43 4.27 -67.48 -0.29 3.14 16 11 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.18 -3.11 7.68 -25.75 -0.20 -3.31 16 13 C 0.14 2.18 4.12 -67.48 -0.28 1.90 16 14 H 0.09 1.56 7.47 -51.93 -0.39 1.17 16 15 N -0.71 -8.86 4.81 -53.37 -0.26 -9.12 16 16 C 0.51 6.53 7.54 -10.98 -0.08 6.45 16 17 O -0.54 -8.79 13.57 5.56 0.08 -8.71 16 18 C -0.14 -1.25 5.18 -27.88 -0.14 -1.39 16 19 C -0.07 -0.65 1.84 -90.62 -0.17 -0.82 16 20 C -0.12 -1.19 4.94 -26.73 -0.13 -1.33 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 22 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 23 C -0.12 -0.86 5.92 -26.75 -0.16 -1.02 16 24 C -0.12 -0.86 5.20 -26.76 -0.14 -1.00 16 25 C -0.13 -1.97 0.92 -154.71 -0.14 -2.11 16 26 C -0.10 -1.67 7.15 -26.29 -0.19 -1.86 16 27 C -0.14 -1.90 8.08 -25.75 -0.21 -2.10 16 28 C -0.12 -1.70 7.62 -26.28 -0.20 -1.91 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.39 9.90 6.23 -40.82 -0.25 9.64 16 31 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 4.23 8.42 -40.82 -0.34 3.89 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.10 1.78 7.03 -51.93 -0.36 1.42 16 48 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.06 0.71 7.58 -51.93 -0.39 0.31 16 52 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -30.33 398.68 -11.26 -41.60 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -9.62 Total: 12.22 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.89 Total: -14.78 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.19 Total: -53.38 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.33 -11.26 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078548784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.466 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds