Wall clock time and date at job start Tue Mar 31 2020 12:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47325 * 2 1 4 4 C 1.53007 * 109.46943 * 119.99201 * 2 1 3 5 5 C 1.52992 * 109.47397 * 296.21732 * 4 2 1 6 6 C 1.50699 * 109.47539 * 185.18903 * 5 4 2 7 7 H 1.08005 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00262 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00380 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00258 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47000 * 90.00160 * 10 8 6 12 12 H 1.48500 * 109.47494 * 210.00342 * 10 8 6 13 13 H 1.48501 * 109.46870 * 330.00380 * 10 8 6 14 14 N 1.46902 * 109.47414 * 239.99107 * 2 1 3 15 15 C 1.46957 * 110.99971 * 178.00183 * 14 2 1 16 16 C 1.53053 * 109.36244 * 176.81472 * 15 14 2 17 17 N 1.46950 * 109.36459 * 58.40002 * 16 15 14 18 18 C 1.46899 * 111.00200 * 176.81246 * 17 16 15 19 19 C 1.50705 * 109.47033 * 293.80205 * 18 17 16 20 20 C 1.38247 * 119.97466 * 269.72088 * 19 18 17 21 21 C 1.38190 * 120.02773 * 179.76508 * 20 19 18 22 22 C 1.38462 * 119.97124 * 0.51124 * 21 20 19 23 23 F 1.35104 * 120.02748 * 179.76695 * 22 21 20 24 24 C 1.38461 * 119.95099 * 359.74535 * 22 21 20 25 25 C 1.38193 * 119.97383 * 359.97438 * 24 22 21 26 26 C 1.46957 * 110.88236 * 300.67821 * 17 16 15 27 27 C 1.46950 * 110.99671 * 54.20235 * 14 2 1 28 28 H 1.09002 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46978 * 300.00643 * 1 2 3 30 30 H 1.08996 * 109.46773 * 60.00562 * 1 2 3 31 31 H 1.08995 * 109.46999 * 176.21177 * 4 2 1 32 32 H 1.09010 * 109.46928 * 56.21594 * 4 2 1 33 33 H 1.09006 * 109.46947 * 305.19118 * 5 4 2 34 34 H 1.09003 * 109.47155 * 65.18515 * 5 4 2 35 35 H 0.96988 * 120.00430 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.48701 * 296.78005 * 15 14 2 37 37 H 1.09002 * 109.48820 * 56.84972 * 15 14 2 38 38 H 1.09002 * 109.48572 * 298.43433 * 16 15 14 39 39 H 1.08998 * 109.48743 * 178.37268 * 16 15 14 40 40 H 1.09003 * 109.46899 * 53.79625 * 18 17 16 41 41 H 1.09003 * 109.47746 * 173.80089 * 18 17 16 42 42 H 1.08001 * 119.97964 * 0.02562 * 20 19 18 43 43 H 1.07999 * 120.01529 * 180.25377 * 21 20 19 44 44 H 1.08001 * 120.01655 * 179.97438 * 24 22 21 45 45 H 1.08000 * 119.99041 * 180.02562 * 25 24 22 46 46 H 1.08995 * 109.49344 * 299.35265 * 26 17 16 47 47 H 1.09000 * 109.50754 * 179.29581 * 26 17 16 48 48 H 1.08998 * 109.49408 * 303.15685 * 27 14 2 49 49 H 1.09007 * 109.49130 * 63.20205 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6092 0.0531 2.4967 6 6 2.2175 -0.5848 3.7190 7 1 2.8480 -1.4557 3.6165 8 6 1.9684 -0.0574 4.9682 9 7 2.4997 -0.6138 6.0350 10 14 0.8773 1.4484 5.1457 11 1 -0.5340 1.0196 5.3185 12 1 1.3051 2.2328 6.3319 13 1 0.9932 2.2900 3.9277 14 7 2.0197 -0.6927 -1.1993 15 6 3.4880 -0.6710 -1.2574 16 6 3.9595 -1.4688 -2.4754 17 7 3.3785 -0.8873 -3.6935 18 6 3.8682 -1.5799 -4.8929 19 6 5.3460 -1.3293 -5.0495 20 6 5.7886 -0.2448 -5.7838 21 6 7.1434 -0.0112 -5.9240 22 6 8.0577 -0.8699 -5.3377 23 9 9.3825 -0.6453 -5.4781 24 6 7.6133 -1.9588 -4.6070 25 6 6.2580 -2.1871 -4.4632 26 6 1.9103 -0.9090 -3.6354 27 6 1.4387 -0.1112 -2.4174 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.1278 -0.7803 1.2161 32 1 1.6223 -1.7274 1.2841 33 1 1.9489 1.0859 2.4186 34 1 0.5225 0.0334 2.5793 35 1 2.3241 -0.2430 6.9138 36 1 3.8334 0.3594 -1.3416 37 1 3.8945 -1.1181 -0.3502 38 1 3.6374 -2.5055 -2.3780 39 1 5.0471 -1.4299 -2.5368 40 1 3.6899 -2.6505 -4.7924 41 1 3.3410 -1.2045 -5.7700 42 1 5.0752 0.4225 -6.2444 43 1 7.4889 0.8384 -6.4943 44 1 8.3256 -2.6295 -4.1495 45 1 5.9110 -3.0361 -3.8929 46 1 1.5648 -1.9393 -3.5512 47 1 1.5035 -0.4621 -4.5426 48 1 0.3512 -0.1501 -2.3560 49 1 1.7606 0.9258 -2.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:10 Heat of formation + Delta-G solvation = -15.494939 kcal Electronic energy + Delta-G solvation = -26737.946398 eV Core-core repulsion = 22999.990167 eV Total energy + Delta-G solvation = -3737.956231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.15286 -40.04467 -38.97830 -36.59641 -33.81281 -32.32428 -31.54687 -31.15200 -30.96820 -29.01185 -27.01705 -25.60729 -24.06746 -23.57123 -22.99688 -21.61374 -21.17695 -19.84268 -19.32825 -17.94599 -16.91038 -16.66378 -16.39817 -16.06162 -15.82233 -15.13257 -14.83257 -14.77654 -14.64185 -14.34306 -14.11354 -13.97271 -13.89174 -13.68487 -13.35323 -12.84853 -12.55211 -12.47401 -12.29804 -12.19215 -12.05846 -11.66451 -11.40872 -11.35271 -11.28629 -11.22914 -11.06876 -10.77717 -10.64152 -10.33147 -9.85022 -9.66002 -9.48946 -9.40743 -9.11539 -8.93895 -8.51642 -8.50864 -8.07892 -6.02073 -3.99500 0.79501 0.92036 3.17463 3.31419 3.38898 3.42493 3.85989 3.96704 4.04501 4.35439 4.41858 4.46878 4.59040 4.79387 4.85074 4.94159 5.03872 5.10930 5.23593 5.26009 5.31635 5.38365 5.39546 5.44514 5.50460 5.58201 5.62697 5.68699 5.75102 5.80390 5.80821 5.88381 5.91402 6.01930 6.04786 6.18636 6.20184 6.27971 6.48894 6.54854 6.56482 6.62086 6.81751 6.85132 6.95705 7.28994 7.32528 7.40998 7.50126 7.83380 8.57316 9.03546 9.60786 11.11593 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.002471 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.675890 B =11330.006910 C =12456.023955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 H 0.036 0.964 4 C -0.093 4.093 5 C -0.012 4.012 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.535 5.535 15 C 0.054 3.946 16 C 0.056 3.944 17 N -0.535 5.535 18 C 0.094 3.906 19 C -0.086 4.086 20 C -0.070 4.070 21 C -0.155 4.155 22 C 0.095 3.905 23 F -0.142 7.142 24 C -0.153 4.153 25 C -0.084 4.084 26 C 0.060 3.940 27 C 0.053 3.947 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -0.910 -27.824 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.131 4.131 5 C -0.050 4.050 6 C -0.555 4.555 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.544 5.544 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.190 1.190 14 N -0.260 5.260 15 C -0.074 4.074 16 C -0.072 4.072 17 N -0.260 5.260 18 C -0.033 4.033 19 C -0.086 4.086 20 C -0.089 4.089 21 C -0.174 4.174 22 C 0.076 3.924 23 F -0.121 7.121 24 C -0.172 4.172 25 C -0.103 4.103 26 C -0.068 4.068 27 C -0.076 4.076 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.149 0.851 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.991 -0.885 -27.629 27.930 hybrid contribution -0.197 0.868 0.304 0.941 sum 3.795 -0.016 -27.325 27.587 Atomic orbital electron populations 1.21937 0.94853 1.02299 1.01178 1.21805 0.95323 0.95565 0.90106 0.94626 1.21534 0.99981 0.99372 0.92212 1.19601 0.96216 0.95665 0.93527 1.21155 1.30410 1.14322 0.89655 0.91097 1.25036 0.95694 0.96931 0.95907 1.69916 1.45035 1.41169 0.98328 0.86788 0.81118 0.83719 0.77727 1.20305 1.21459 1.19037 1.62238 1.06655 1.55191 1.01924 1.22194 0.88186 0.99192 0.97827 1.22271 0.99404 0.96749 0.88797 1.62194 1.07346 1.54645 1.01828 1.21007 0.91067 0.97149 0.94118 1.19822 0.95388 0.95492 0.97925 1.20875 0.94465 0.96250 0.97273 1.21153 0.93258 1.00445 1.02524 1.17755 0.77504 0.96873 1.00309 1.91502 1.31806 1.94468 1.94291 1.21138 0.96968 0.97975 1.01100 1.20977 0.91838 0.99308 0.98144 1.22166 0.86823 0.99622 0.98195 1.22199 0.99757 0.96350 0.89267 0.91983 0.91566 0.93558 0.92683 0.92178 0.96976 0.96828 0.92801 0.94336 0.89264 0.93920 0.90235 0.93630 0.89793 0.84959 0.84815 0.84702 0.85099 0.93915 0.90623 0.89889 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.51 37.16 0.32 -1.85 16 2 C 0.08 1.30 2.16 -67.71 -0.15 1.15 16 3 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.09 -1.85 4.57 -26.73 -0.12 -1.97 16 5 C -0.01 -0.29 3.63 -27.89 -0.10 -0.39 16 6 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 7 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 8 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 10 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 14 N -0.53 -7.61 4.58 -226.48 -1.04 -8.65 16 15 C 0.05 0.75 5.36 -3.77 -0.02 0.73 16 16 C 0.06 0.63 5.25 -3.77 -0.02 0.61 16 17 N -0.54 -5.42 4.70 -235.91 -1.11 -6.53 16 18 C 0.09 0.75 5.12 -4.97 -0.03 0.72 16 19 C -0.09 -0.71 4.89 -104.61 -0.51 -1.23 16 20 C -0.07 -0.56 9.70 -39.60 -0.38 -0.94 16 21 C -0.16 -1.30 10.03 -39.52 -0.40 -1.70 16 22 C 0.09 0.91 7.30 -39.42 -0.29 0.62 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.46 16 24 C -0.15 -1.33 10.03 -39.52 -0.40 -1.72 16 25 C -0.08 -0.69 7.91 -39.59 -0.31 -1.01 16 26 C 0.06 0.59 5.61 -3.77 -0.02 0.57 16 27 C 0.05 0.62 5.18 -3.77 -0.02 0.60 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.05 6.65 -51.93 -0.35 0.71 16 30 H 0.05 0.58 6.26 -51.93 -0.33 0.25 16 31 H 0.05 1.11 6.19 -51.93 -0.32 0.79 16 32 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 33 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 34 H 0.01 0.32 6.22 -51.93 -0.32 -0.01 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.32 6.12 -51.93 -0.32 1.01 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.86 5.95 -51.93 -0.31 0.55 16 40 H 0.05 0.35 8.06 -51.93 -0.42 -0.07 16 41 H 0.08 0.56 7.97 -51.93 -0.41 0.14 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.13 0.92 7.99 -52.49 -0.42 0.50 16 46 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 48 H 0.08 0.92 6.03 -51.93 -0.31 0.60 16 49 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -31.21 379.27 -11.28 -42.49 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.11 Total: -2.18 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.88 Total: -19.19 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -1.37 Total: -42.60 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.21 -11.28 -42.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.994 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds